|
|
| (3 intermediate revisions by 3 users not shown) |
| Line 1: |
Line 1: |
| − | {{JaponicaGene|
| + | The rice '''Os01g0550100''' was reported as ''' osubp6''' in 2009 <ref name="ref1" /> by researchers from the Korea. |
| − | GeneName = Os01g0550100|
| + | <br> |
| − | Description = Similar to Ubiquitin-specific protease 6|
| + | ==Annotated Information== |
| − | Version = NM_001049834.1 GI:115437451 GeneID:4326194|
| + | ===Gene Symbol=== |
| − | Length = 7943 bp|
| + | *'''Os01g0550100 <=> osubp6''' |
| − | Definition = Oryza sativa Japonica Group Os01g0550100, complete gene.|
| + | <br> |
| − | Source = Oryza sativa Japonica Group
| + | ===Function=== |
| | + | *loss of '''OsUBP6''' is functionally compensated for by an as-yet unknown OsUBP homolog during later stages of development in rice plants. |
| | + | <br> |
| | + | ===Expression=== |
| | + | *'''OsUBP''' genes are expressed at varying degrees in different rice tissues. We isolated a full-length cDNA clone for '''OsUBP6''', which possesses not only a UCH domain, but also an N-terminal ubiquitin motif. Bacterially expressed '''OsUBP6''' was capable of dismantling K48-linked tetraubiquitin chains in vitro. Quantitative real-time RT-PCR indicated that '''OsUBP6''' is constitutively expressed in different tissues of rice plants. |
| | + | <br> |
| | + | ===Mutant=== |
| | + | *The researchers also examined how knock-out of '''OsUBP6''' affects developmental growth of rice plants. Although homozygous T3 osubp6 T-DNA insertion mutant seedlings displayed slower growth relative to wild type seedlings, mature mutant plants appeared to be normal. |
| | + | <br> |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Labs working on this gene== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | *Department of Biology, College of Life Science and Biotechnology, Yonsei University, Seoul 120-749, Korea, |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *Rice Research Division, National Institute of Crop Science, Rural Development Administration, Suwon 441-857, Korea, |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | *Department of Life Science, Pohang University of Science and Technology, Pohang 790-784, Korea, 4These authors contributed equally to this work. |
| − | |
| + | <br> |
| − | Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|
| + | ==References== |
| − | AP = Chromosome 1:22238486..22246428|
| + | <references> |
| − | CDS = 22238766..22238815,22238897..22238971,22239052..22239171,22239370..22239418,22239568..22239642<br>,22239724..22239804,22240331..22240399,22240479..22240568,22240743..22240851<br>,22241325..22241378,22241547..22241611,22241699..22241758,22242743..22242869<br>,22242950..22243050,22243944..22244051,22244164..22244199,22244304..22244449<br>,22246290..22246299|
| + | <ref name="ref1"> |
| − | GCID = <gbrowseImage1>
| + | Structure and Expression of OsUBP6, an Ubiquitin-Specific Protease 6 Homolog in Rice (Oryza sativa L.) |
| − | name=NC_008394:22238486..22246428
| + | </ref> |
| − | source=RiceChromosome01
| + | |
| − | preset=GeneLocation
| + | </references> |
| − | </gbrowseImage1>| | + | <br> |
| − | GSID = <gbrowseImage2>
| + | |
| − | name=NC_008394:22238486..22246428
| + | ==Structured Information== |
| − | source=RiceChromosome01
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 1]] |
| − | preset=GeneLocation
| |
| − | </gbrowseImage2>| | |
| − | CDNA = <cdnaseq>atgccgaccgtaagcgtgaaatggcagaaggagaccttcccaggcatagagatagacaccagccagccgcctgttgtctttaagacccagctatacactctgactggtgtaccacctgaaaggcaaaaaattatggtgaagggtggaatattgaaggatgatgcagattggtctactttgggagtgaaagatggtcaaaaattgatgatgataggtacagctgatgagattgtgaaagctccagagaaaggaccagtatttgtagaggatctaccagaagaagagcaagtggttgcactgggacacagtgctggtctttataacttggggaatacatgttacatgaattccactttgcagtgcctgcattctgttccagagctgaagtcagctttattgagttattcagataatgtgaggggtaatggtgttgaccaagcctcccataatttgactgttgcaactcgtaatactttcggagagcttgatcaaagtgttcggcctgttgcacctctactcttcttacagacgctgcgtaaaaagtatccccagtttgcgcaacaacaaaataatgtttatatgcaacaggatgcagaagaatgctggacccaattggtgtatacactttctcaaactcttacatcagaaacaagtgaacctcctgctggtcaaatgaaggaactttttgggattgatctcgtgagcagggtccattgtgcagaaagtggtgaagagagtttagagagagaatcagtttattctttgaagtgtcatatatctcatgatgtaaaccaccttcatgaaggacttaagcatggtttgaagtcagaacttgagaaggcttcaccttcactgggtcgcactgctctttatacaagagagtcaagaataaatgagttgcctaggtacttgactgtgcagtttgttcgtttcttttggaaaagggaatcaaaccagaaggcaaagattttacggaaagttgattacccgctggaactggatgtttatgacttttgctcagatgaactgaaacaaaaactccaagctccccgacagatgctgagagatgcagaaaatgctaagtttggattaaaagcacaaggaaaggccagcagctcaaaagaaaatgagggttcatcaagcaatgctggggaatcatccagcatggatattgacaaagccgattcttctgtgccaaagaaacatttgactggcatctatgatttaattgctgttttgacgcacaaagggagaagtgcagactcaggccattatgttggctgggttaagcaagatgacgggaaatggattgaatttgatgatgacaaccctagcatacgcaaggaggaagagattttaaagttatctggtggaggcgactggcacatggcttacatttgcctgtacaaagctcgtgttatctga</cdnaseq>|
| |
| − | AA = <aaseq>MPTVSVKWQKETFPGIEIDTSQPPVVFKTQLYTLTGVPPERQKI MVKGGILKDDADWSTLGVKDGQKLMMIGTADEIVKAPEKGPVFVEDLPEEEQVVALGH SAGLYNLGNTCYMNSTLQCLHSVPELKSALLSYSDNVRGNGVDQASHNLTVATRNTFG ELDQSVRPVAPLLFLQTLRKKYPQFAQQQNNVYMQQDAEECWTQLVYTLSQTLTSETS EPPAGQMKELFGIDLVSRVHCAESGEESLERESVYSLKCHISHDVNHLHEGLKHGLKS ELEKASPSLGRTALYTRESRINELPRYLTVQFVRFFWKRESNQKAKILRKVDYPLELD VYDFCSDELKQKLQAPRQMLRDAENAKFGLKAQGKASSSKENEGSSSNAGESSSMDID KADSSVPKKHLTGIYDLIAVLTHKGRSADSGHYVGWVKQDDGKWIEFDDDNPSIRKEE EILKLSGGGDWHMAYICLYKARVI</aaseq>|
| |
| − | DNA = <dnaseqindica>7614..7663#7458..7532#7258..7377#7011..7059#6787..6861#6625..6705#6030..6098#5861..5950#5578..5686#5051..5104#4818..4882#4671..4730#3560..3686#3379..3479#2378..2485#2230..2265#1980..2125#130..139#gtcgccctcgtagtactatttcgcttcgcctctcctctctacctccgtcgccgtccggttcctttctcttcctccaagtaaactcggtctccgccgcctcctccgccgccgcgccgccgattcgcagccatgccgaccggtgagctccctccccctcctccctcgcttccctctctcgtattggcggcgatctgatcgccgcggcggggactcgcttctgaatcgccgttcgcgttcctgtgcggcggcggagtcccactctactttctctctgtggcttgggggtttgggggatttttggttcgatctgcatctgcctcccggtggggaggaataggatggaaggggattggcgccggaggggttggtgggggttagctgggtttcctgtgcgggtggaggattggcgagggcttctcgtctgtgaatgtagggcttagttctctgccctagcagattcggactcgcgttctcggttcacttgacgcattcgcacctgcgggtgcagcggggctgcttgcagatgcatgtagcagtgctacgtgctcgatgaattcgagcgccggttgcgtgttactgtgaaacattgcacaggagatgtgtgtgtatgcgcgcgcgcacaccatggcacggtgctgtttaagaaattatttctggatgtttgcatctggtctagggctatgtttagttgtagacttgatagtcagtggatgctagcgcgtcttttttaacagtctgttaagtactcggttgtgttattgtgttgcatcttgattgcatggattatttttctttttttgtctaacctccacacaaaccagtcaggcctctgtgctatgttgtcaagaagttccaaaccatgaatttaggtctttgcctattgcagtgagctcgtgaagtgctgaaatacgaatgaattgtatgttacatcatgtctaagtgtgaatttagtcagctttttcagcgtgatattttcacattgcaccttggtgtggagtacgtctaccctatcatatgttgagaattatactttcagtagcttctgcatgtttcatttcctttggcaatctctgggtctgtttggcacggctccagctccacctctcctggaggctggagctggagcccatccaaacagtttcagttttacataaaatggagtggtgctggctagaacgctcttacaaaatgaactagagaggtggagctgggtttaggctgctccacaactccactccagactcaactcctgaagttaaatttaggagttggagctctacctaatgggccctctatttgctcgcttgctcctagttgggtattgaattactttataatttgtatgttcagatgttctcttaacatggaatctcccctcaaaaataggagttagtggtggtgtcagtgtgccctatgcctatatcttttatcgacgaatttctgtattcacttgtgcgttgtattttattgtattgtttgcttgcgtttatatgtaccatcagctgatgatataattgcatgtgagttttttattagaaatttgtagaatataattgtttaaactcagaacacatattctttttcttttgagatatgtcgcaatgcatgggttgatgctagtatgaaccataaaaatgaactagttctgttagttccatttaactttatcgagctatagataatgaatgccctgccaatatcaaaactttgatacgaagatttggttttatctataaagataatattattgggttgagtgttttaagtcaaatggggatttttcttttgtgctgcatgatttgatccatactgtttagaacatgcaaggtgtagggtgctagggtggtttgcttcctccatggctacacaataatctcatgtatttgttccactagtcaaagcagtttatgtgttgtttcttcacccttccttcgtactcaatttcttaccatgattgctgcttttggaatgctttccagtaagcgtgaaatggcagaaggagaccttcccaggcatagagatagacaccagccagccgcctgttgtctttaagacccagctatacactctgactggtgtaccacctgaaaggcaaaaaattatggtgaagggtggaatattgaaggtaatacatgctcacgtgcttatggacacaactgattttcatgtacttctatatttaatctttctttgtaacaacgtggtcaattttctgtatttgtaatgcaggatgatgcagattggtctactttgggagtgaaagatgtgagattatcaacctgtcttccattcacatttttattctaccagacccttaatacattcaagtattcaactacatgtatataatgttaaggattggaaatgcactctgcagggtcaaaaattgatgatgataggtacagctgatgagattgtgaaagctccagagaaaggaccagtatttgtagaggatctaccagaagaagagcaagtggttgcactggtgcgtttgacctctcaatttatgcttatctctactataataaaagaagctagtagttatggtggcggcgagttcgccaacccactactagtctactactatgggatcttccatgcataactatatgcatacatgtctttattagttgcatagatatatgcatacatatttttattagttgaatcttctctgtataattatgtcatttggggattgatgtacaattggaaagtactccctccgtcccaaaataactgcagctgtgtagttcaaatttgaactgtggctgcacttatattgggacggtgggagtatatagtttcttttgagttcagaatttataatatacttgctctcgattgttgcaatgcatgggtatttggttaatctgttctgaaatttattaggagtggcaaccttgcatgggcgcatggcctctcagaataacaactcaataaatttgtctaatatcatatgtccgtatgaaccataacacttttgtctgcaaaccaagataaatgactggagacaacaaatacccagtacacttgcagtgttatctgttaacatagatgtgttaagaacatatgctattgtctttccattgccattcgacagctcgtcatgcataattcctgaaacaacctgcttaatgtatcttatatgcttaaattaatcaagaatcaatataatcatggtatctagagtggaaattgtgattgcggataagctaaagtgatattgttgttatagatatcttatgttgtaataaattcgcaatgtcaaaaaattcaaattgcttaagagcgctattatatttggcataagcatgttggtcttattttggtgttcttaatctgtgctgcaagtgagatttctctttggaatttcagggacacagtgctggtctttataacttggggaatacatgttacatgaattccactttgcagtgcctgcattctgttccagagctgaagtcagctttattgaggttccactgaaaattgctttgaagtaagttttgaagaaaggaatttcttcttggctaactcatatgttttacttgtgcagttattcagataatgtgaggggtaatggtgttgaccaagcctcccataatttgactgttgcaactcgtaatactttcggagagcttgatcaaagtgttcggcctgttgcacctctactcttcttacaggtcagcattcagcttaccccatttggccattacatctaaagctagagaatcttcaattcgtttctgtgattaggagagctccagagctccttttatgttactgttctatttatgacatcttcacaaattagataagaaatattcttttttatatgtaggctgttgttgcatgggtcaggtcaaaaaaatagaacaatacttctattatatgttctaagtatctagagtagattaactacatgaaaatgatatcagtagatttctgatgtaaaagaagatttctgatgcaaaggagtttcatgacactacatttttgctggcatatcattatagaaaatgatgcttgtagttttctattaaagttggaaaccatgaactgctgtatgaaatgaaaagtccatcataacaactatatgtatttctaatacaaaatttgatactgttttcctatgtgtatgctcgagtggaacttgagttgtaattatttgagtatttacaaggaatgacatgtttatatgaaattacttgaactgaatttcgtgacatccctttggtagaaaggtgattgtagccttttttttttctggtggggccacatgaacacaatgaaattttggcatgaaatatctattttgagatagcaatctacttaagttaaaaaaaaattcaaaatttataattcagggcttgacagttctatgtggaccccaatgaagtttgacattgttttaacatttttggtttgattagaaaaacaactgccattcttccaattcccaatggacttccatgtcaagctgtttttggtggctctgaatgccagtttctttactgttttggttttatgttttgccacattgtagcatatagatcgaggatatctagatgagtttgtctacaaggtttaaatgttttgggaaaaactataatttataatgcttggattttttgtactaactttttgtttgatctacacttgagcagacgctgcgtaaaaagtatccccagtttgcgcaacaacaaaataatgtttatatgcaacaggtttgtttggttcacctatgattaaattttaagtttttctactgtttatctgtatgattaaatattgttcacttgaacaaattgcaggatgcagaagaatgctggacccaattggtgtatacactttctcaaactcttacatcagaaacaaggtaatttattgcagttattcacctaacagctcatatgcaattgtggagtgatgtttgttttcctggggatgctcccccctccccccccccttccctttttcctccctctctctctgagtacacagtagtgtttggctgctccgcttaccattttgtcttttttggtagtgaacctcctgctggtcaaatgaaggaactttttgggattgatctcgtgagcaggttctctctctctctctctctctcacacacacacacacacacacacacacactcatctgttttaattgggggggtgtgttcttttctgttgtacaaaggtactgtactgtatcatacagttcactatgagttaacaattctgttgtggtttcttctgtttatggatctttgctgattgtgctagtttgtcggtgcatttccaaaatggtactagtaatatagagcttggatccctgcttaaaacttttagcatatccaccacaagtagacctgatggttttttccatcttttttatgcacaatttttgtgccgtcttctgatgtcatgtcagatgaggacactcatttgacattttattcccgaggcagcagaactagttacctgtattgaattaaaaaaaactatttgttcataagcacgatgacaatgctccagtgtgcttctatttattaatgttggcttctatttgcagggtccattgtgcagaaagtggtgaagagagtttagagagagaatcagtttattctttgaagtgtcatatatctcatgatgtaaaccaccttcatgaaggacttaagcatgtaagttatgttaccattattaaactcataatttctattttatatcgagtagctcattgctgattctgacaggatagttttttatgtgtacattatttttatactatgcttgcataaaacctcagaatttgtatgagaaggcccatgtaattattcttgtattctttcctgcagggtttgaagtcagaacttgagaaggcttcaccttcactgggtcgcactgctctttatacaagagagtcaagaataaatgagttgcctaggcaagaacctaaatattttcttgattatattatctcttattttattcagaaattataagtatgccaattctgtgttcaggtacttgactgtgcagtttgttcgtttcttttggaaaagggaatcaaaccagaaggcaaagattttacgggtatgtttatttctcgagtaaaaaacatactccctttggtaaaactatagaacaacacttttaagcaagaactacacttctttacagtaacttttgagaaatatagacctttttttgcttgcatctcatccaatgagccaggcctcttgggcccactcatcactctcagaaacgtaccctgtttccttttccttattggataggcttgtgagatttacaagtggttgtgatctgtcaaggaggcaatacttaaaaagtatttcttgcaaaaagaaaatcgtggttctctgaaattgctgcttggaggtgtaattatggaataattttacatagtatggttttctaaaagttctctgatttctttgttttttttcctttcataaccacaaatgccttcctataatatcattgcatgatcttgtgaggaaagcttgattgattcttcttgatactgtccgctcagagttttgttctacctctttcgtttgaaaacaagttgtaatattctttcttcttttacttccagaaagttgattacccgctggaactggatgtttatgacttttgctcagatgaactgaaacaaaaactccaagctccccgacaggtagtactactactcttttcatttccatgtttgagctctgttgtgccattgatgatcaccacatttaatttgcatgtgaagatgctgagagatgcagaaaatgctaagtttggattaaaagcacaaggaaaggccagcagctcaaaagaaaatgaggtaatggtctttaggaatatatggttgattcatcagtttagagttgttgagacatgcgcttatcattcttttgttgagcacacatgttaaccactccaaaatgccttttgtacttgaacggatccttacggagttgcacttcatttcagggttcatcaagcaatgctggggaatcatccagcatggatattgacaaaggcaagtagttggcttctgttcttatttagagaaatagctcagatacttgtactctttgtttgtcaaatggtggggtttttctgcctcttattatgttagggttctagtgtatctattcaagtagcatgctgcgacccatacttcaatactttcaatctggttagctttatgcttagctgtgttgtgtgtttactgcagccgattcttctgtgccaaagaaacatttgactggcatctatgatttaattgctgttttgacgcacaaagggagaagtgcagactcaggccattatgttggctgggttaagcaagatgacggtagggccagctactcatgcagttaattattggagtcaactgtttatttacgatctcactgatgattatgagctttttagggaaatggattgaatttgatgatgacaaccctagcatacgcaaggaggaagagattttaaagttatctggtggaggtgagtaatatacataactaaacattagcttgaacatgttatgattcatgaacaactctaagctgttgcttctctaaacaggcgactggcacatggcttacatttgcctgtacaaagctcgtgttatctgaattggaatgccagacaggctgatgagctgatttgtttacatttctcaagttgccagtagtttgcttgccttttgtaatgcatgagcgaacgtattattgatttttccagtttggttcaaactgagaagtaagcatgtgacttgcattggtgctggtgtttggtcggtggtcactgggactttagacgtgtaattttgagatgttgaactagaatattttacagtagtaaacaaatatatactgcaaagaaactgagcggaaaatataatttatttcatgg</dnaseqindica>|
| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001049834.1 RefSeq:Os01g0550100]|
| |
| − | }}
| |
| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]]
| |
| − | [[Category:Japonica Chromosome 1]] | |
| − | [[Category:Chromosome 1]]
| |
