Difference between revisions of "Os01g0869800"

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(Created page with "{{JaponicaGene| GeneName = Os01g0869800| Description = Similar to Photosystem II subunit PsbS| Version = NM_001051464.1 GI:115441298 GeneID:4324933| Length = 2559 bp| Def...")
 
 
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{{JaponicaGene|
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The rice gene Os01g0869800 was reported as '''''qNPQ1-2''''' in 2011<ref name="ref1" /> by researchers from Japan.
GeneName = Os01g0869800|
 
Description = Similar to Photosystem II subunit PsbS|
 
Version = NM_001051464.1 GI:115441298 GeneID:4324933|
 
Length = 2559 bp|
 
Definition = Oryza sativa Japonica Group Os01g0869800, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Gene Symbol===
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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*'''''Os01g0869800 <=> qNPQ1-2,OsqNPQ1-2
            clade; Ehrhartoideae; Oryzeae; Oryza.
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|
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===Function===
Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|
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* '''''qNPQ1-2''''' seems to be responsible for the difference in NPQ capacity between Indica and Japonica.
AP = Chromosome 1:39452871..39455429|
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* Indica cultivars lack a 2.7-kb region at the point 0.4 kb upstream of the '''''OsPsbS1''''' gene, suggesting evolutionary discrimination of this gene.
CDS = 39452956..39453153,39453270..39453386,39454766..39455257|
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===Mutation===
GCID = <gbrowseImage1>
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* One of the two rice PsbS homologues (OsPsbS1) was found within the qNPQ1-2 region. PsbS protein was not accumulated in the leaf blade of the mutant harboring transferred DNA insertion in OsPsbS1.
name=NC_008394:39452871..39455429
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* NPQ capacity increased as '''''OsPsbS1''''' expression increased in a series of transgenic lines ectopically expressing OsPsbS1 in an Indica cultivar.
source=RiceChromosome01
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===Expression ===
preset=GeneLocation
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</gbrowseImage1>|
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===Evolution===
GSID = <gbrowseImage2>
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name=NC_008394:39452871..39455429
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You can also add sub-section(s) at will.
source=RiceChromosome01
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==Labs working on this gene==
preset=GeneLocation
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*Institute for Environmental Science and Technology, Saitama University, 255 Shimo-Okubo, Sakura-ku, Saitama City, Saitama 338-8570, Japan;
</gbrowseImage2>|
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*QTL Genomics Research Center, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan;
CDNA = <cdnaseq>atggcgcagtcgatgctggtgtcgggagccaatggcacggtggccgccgcgagcaccagcaggctgcagcccgtgcggccgacgccgttctcgcggctcgtgctgtcgcagccgtcgtcgtcgctggggcgcgcggtgtccgtcaagacggtggcgctgttcggcaggtccaagaccaaggccgcgcccgcaagaaaggctgagccgaagccaaagttcaagaccgaggacggcatcttcggcacgtccggtgggatcggtttcaccaaggagaacgagctgttcgtcgggcgtgtcgccatgctcgggtttgccgcgtcgatcctgggtgaggccatcaccgggaagggaatcctggcgcagctgaacctggagacggggatcccgatctacgaggcggagcccctcctcctcttcttcatcctcttcaccctcctcggcgccatcggcgcgctcggcgaccgcggcagcttcgtcgacgaccagccggtgacgggcctcgacaaggccgtcatcgccccgggcaagggcttccgctccgcgctgggcctcagcgagggcggcccgctgttcggcttcaccaaggccaacgagctgttcgtcggccggctcgcgcagctcggcatcgccttctccatcatcggcgagatcatcaccggcaagggcgccctcgcgcagctcaacatcgagaccggcgtccccatcaacgagatcgagccgctcgtcctcttcaacgtcgtcttcttcttcatcgccgccatcaaccccggcaccggcaagttcgtcagcgacgacgacgaagagtag</cdnaseq>|
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*Institute of Molecular and Cellular Biosciences, University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan; *Graduate School of Science and Engineering, Saitama University, 255 Shimo-Okubo, Sakura-ku, Saitama City, Saitama 338-8570, Japan;
AA = <aaseq>MAQSMLVSGANGTVAAASTSRLQPVRPTPFSRLVLSQPSSSLGR                    AVSVKTVALFGRSKTKAAPARKAEPKPKFKTEDGIFGTSGGIGFTKENELFVGRVAML                    GFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGSFVD                    DQPVTGLDKAVIAPGKGFRSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEII                    TGKGALAQLNIETGVPINEIEPLVLFNVVFFFIAAINPGTGKFVSDDDEE</aaseq>|
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*Iwate Biotechnology Research Center, 22-174-4 Narita, Kitakami, Iwate 024-0003, Japan
DNA = <dnaseqindica>86..283#400..516#1896..2387#agcacgaggcggcctgagctgaacaccgcatcagcagcagcaagcagctaatcgcgcacgtacgcacaccgcgacccggggcgagatggcgcagtcgatgctggtgtcgggagccaatggcacggtggccgccgcgagcaccagcaggctgcagcccgtgcggccgacgccgttctcgcggctcgtgctgtcgcagccgtcgtcgtcgctggggcgcgcggtgtccgtcaagacggtggcgctgttcggcaggtccaagaccaaggccgcgcccgcaagaaaggttggaatttggatggatgaatgcaagctaaactaagctaagctaagctcgcgtttgttttagtcttatgtttgatggtgctaactattttgtaacgtgtcaacgtgtgtatgtaggctgagccgaagccaaagttcaagaccgaggacggcatcttcggcacgtccggtgggatcggtttcaccaaggagaacgagctgttcgtcgggcgtgtcgccatgctcgggtttgccgtaagtagacctttcttggccttctagttatttggtatgcatcatttcttgccatcttggtacgtacctgtgcgttcgggtttgggttagctagctagcaagagcacaagcttaaacgtcaaaagttttgtggttaacggaagcactttacccgggagcgtcatcctttattctataaagggtcacatgttgcataggtagatttgcttccaactacttttttttaaaaaaaaattatagtttttgtcatatattttactttgaattttctgtgcacataaaaatgctatatttctccttagcaaatattgctacttttattttatttttcagtccgagttttgacagcgacattgtttaatctaggccagttagcaactcacatgtataccacacacataactaatgaattatctggatttagtaatataggtattgtaggttttaaaaaattcgtctttcgagcagatatattgtttaatgagtaaattttagagaactataaatttagtgactaaattatcagcttgttgtaacgttagtgacatattatatttcagtttaggaagaagaggggatttctgaaaaaaaaagaatgaatctccttcctgcagcaataacaaagaaaatcattataaatctacaactacgtgaacaacctaacgttaatcctgctgaaacgccgctcagtcggtgcacctgagtcaaaacctcattccaaggtagggcaaatggccatttcatcttcccctttgccctttttagcttgatgggttttaacctcggtgcaccaaccgagtgcgagtagcattctagtcggaacaaacggaacaattagtttcaggccgattttagttacaaactttttcttcaaacttttaacttttctatcacatcaaaactttcctatacaaataatcttacaacttttccgtcacatcgttccaatttcaactataaacttttaagtttagcgtgaactaaacacacccctagtggagtcgaaccaaagtgatgcacttagttgtcggccgatgtggcatgctgctacgatgcacatcttgacattgacgtgtcatgaagacatgttcctccatcttgccacactatatactacctctatgacacgcgatgtccatgtatcaataatattactaggatgtatatgatgttacagatttgtgatattttttttcttttattactgtaacaaactaaaactggttgtaaatgttgtagcacttagatagtttagtcactaaatttacagtgctttaaaatttactctcgtttaataatttgtatagtgtacatgcatgactagcacaatcgatcgttgagtcataccaacctgatgcaaaagcgctcaaactgtgcaggcgtcgatcctgggtgaggccatcaccgggaagggaatcctggcgcagctgaacctggagacggggatcccgatctacgaggcggagcccctcctcctcttcttcatcctcttcaccctcctcggcgccatcggcgcgctcggcgaccgcggcagcttcgtcgacgaccagccggtgacgggcctcgacaaggccgtcatcgccccgggcaagggcttccgctccgcgctgggcctcagcgagggcggcccgctgttcggcttcaccaaggccaacgagctgttcgtcggccggctcgcgcagctcggcatcgccttctccatcatcggcgagatcatcaccggcaagggcgccctcgcgcagctcaacatcgagaccggcgtccccatcaacgagatcgagccgctcgtcctcttcaacgtcgtcttcttcttcatcgccgccatcaaccccggcaccggcaagttcgtcagcgacgacgacgaagagtagaattacgaggatcgatcgatctaccgaggtttcgccgccattgttgtgcttgcgcatcattgagactttctttcaagtgtatatgtactgtgtacgtgtaggtgtaaagacgtaccttgtttaattagttgttaattaatgcccatggagaaaattaacgtgagatttagct</dnaseqindica>|
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==References==
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001051464.1 RefSeq:Os01g0869800]|
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<references>
}}
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* <ref name="ref1">
[[Category:Genes]]
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Lin F, Chen S, Que Z, et al. The blast resistance gene Pi37 encodes a nucleotide binding site–leucine-rich repeat protein and is a member of a resistance gene cluster on rice chromosome 1[J]. Genetics, 2007, 177(3): 1871-1880.
[[Category:Japonica mRNA]]
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</ref>
[[Category:Oryza Sativa Japonica Group]]
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</references>
[[Category:Japonica Genes]]
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[[Category:Japonica Chromosome 1]]
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[[Category:Chromosome 1]]
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==Structured Information==
 +
    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 1]]

Latest revision as of 15:07, 20 December 2016

The rice gene Os01g0869800 was reported as qNPQ1-2 in 2011[1] by researchers from Japan.

Annotated Information

Gene Symbol

  • Os01g0869800 <=> qNPQ1-2,OsqNPQ1-2

Function

  • qNPQ1-2 seems to be responsible for the difference in NPQ capacity between Indica and Japonica.
  • Indica cultivars lack a 2.7-kb region at the point 0.4 kb upstream of the OsPsbS1 gene, suggesting evolutionary discrimination of this gene.

Mutation

  • One of the two rice PsbS homologues (OsPsbS1) was found within the qNPQ1-2 region. PsbS protein was not accumulated in the leaf blade of the mutant harboring transferred DNA insertion in OsPsbS1.
  • NPQ capacity increased as OsPsbS1 expression increased in a series of transgenic lines ectopically expressing OsPsbS1 in an Indica cultivar.

Expression

Evolution

You can also add sub-section(s) at will.

Labs working on this gene

  • Institute for Environmental Science and Technology, Saitama University, 255 Shimo-Okubo, Sakura-ku, Saitama City, Saitama 338-8570, Japan;
  • QTL Genomics Research Center, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan;
  • Institute of Molecular and Cellular Biosciences, University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan; *Graduate School of Science and Engineering, Saitama University, 255 Shimo-Okubo, Sakura-ku, Saitama City, Saitama 338-8570, Japan;
  • Iwate Biotechnology Research Center, 22-174-4 Narita, Kitakami, Iwate 024-0003, Japan

References

  1. Lin F, Chen S, Que Z, et al. The blast resistance gene Pi37 encodes a nucleotide binding site–leucine-rich repeat protein and is a member of a resistance gene cluster on rice chromosome 1[J]. Genetics, 2007, 177(3): 1871-1880.


Structured Information