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| − | Please input one-sentence summary here.
| + | The rice '''Os01g0639200''' was reported as ''' snl6''' in 2010 <ref name="ref1" /> by researchers from the USA. |
| | + | <br> |
| | | | |
| | ==Annotated Information== | | ==Annotated Information== |
| | + | ===Gene Symbol=== |
| | + | *'''Os01g0639200 <=> snl6''' |
| | + | <br> |
| | ===Function=== | | ===Function=== |
| − | Please input function information here.
| + | *'''Snl6''' is required for pathogenesis-related gene expression. In contrast to previously described CCR family members, disruption of Snl6 does not result in an obvious morphologic phenotype. |
| − | | + | <br> |
| | ===Expression=== | | ===Expression=== |
| − | Please input expression information here.
| + | *'''Snl6''' mutants have reduced lignin content and increased sugar extractability, an important trait for the production of cellulosic biofuels. |
| − | | + | <br> |
| − | ===Evolution===
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| − | Please input evolution information here.
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| − | | |
| − | You can also add sub-section(s) at will.
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| | | | |
| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | Please input related labs here.
| + | *The University of North Carolina at Chapel Hill, United States of America |
| | + | <br> |
| | + | ==References== |
| | + | <references> |
| | + | <ref name="ref1"> |
| | + | Characterization of a histidine- and alanine-rich protein showing |
| | | | |
| − | ==References==
| + | interaction with calreticulin in rice |
| − | Please input cited references here.
| + | </ref> |
| | | | |
| | + | </references> |
| | + | <br> |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 1]] |
| − | GeneName = Os01g0639200|
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| − | Description = NAD-dependent epimerase/dehydratase family protein|
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| − | Version = NM_001050209.1 GI:115438788 GeneID:4326581|
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| − | Length = 6333 bp|
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| − | Definition = Oryza sativa Japonica Group Os01g0639200, complete gene.|
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| − | Source = Oryza sativa Japonica Group
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| − | | |
| − | ORGANISM Oryza sativa Japonica Group
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| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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| − | clade; Ehrhartoideae; Oryzeae; Oryza.
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| − | |
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| − | Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|
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| − | AP = Chromosome 1:27396786..27403118|
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| − | CDS = 27396786..27397114,27397222..27397375,27397543..27397743,27400401..27400576,27402839..27403118<br>|
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| − | GCID = <gbrowseImage1>
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| − | name=NC_008394:27396786..27403118
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| − | source=RiceChromosome01
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| − | preset=GeneLocation
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| − | </gbrowseImage1>|
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| − | GSID = <gbrowseImage2>
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| − | name=NC_008394:27396786..27403118
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| − | source=RiceChromosome01
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| − | preset=GeneLocation
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| − | </gbrowseImage2>|
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| − | CDNA = <cdnaseq>atgggcgtcctgaggagcacgcagagcatgcaggcggaggtggaggagatgcgggcggcgctgctgcatggccacgggggcggggcggcggcggcggcggcggccgggtggcgcccctcggccggcgacgcggacgtcaagcgcaccgcgggcggcgacgggggcgcggcggggccgcgcaccgtctgcgtcacgggcggcatctccttcgtcgggttcgccgtcgtcgaccgcctgctccggcacggctacaccgtgcgcctcgccctcgagacccaagaggacctggacaagctgagggagatggagatgttcggcgaggacggccgggacggcgtgtggacggtgatggcgaacgtgacggaccccgagagcctgcaccgggcgttcgacggatgcgccggcgtgtttcacacctcggcgttcgtggatccggggggcatgtccggctacacgaaacatatggcaagcttggaggcgaaagcagcagagcaggtgatcgaggcgtgcgtgaggacagagtccgtcagaaaatgcgtcttcacgtcgtcgttgctagcatgtgtatggaggcaaaattaccctcatgaccgacggtttcctaccatcatcgacgagaactgctggagcgatgagagcttctgccgtgacaacaagctgtggtttgcactgggcaagacggcagcggagaagacggcgtggagggcagccaggggtagggacctgaagctggtcaccgtctgcccggcgctggtcaccggtccgggattccgccgccgcaactccaccgcctccatcgcctacctcaaaggggctcgcgccatgctcgccgacggcctgctcgcgacggcgagcgtggagacggtggcggaggcgcacgtccgggtgtacgaggcgatgggcgacaacacggccggcgggaggtacatctgctacgaccacgtggtgaagaggcccgaggagttcgcggagctggagcgccagctggggatcccgcgcagagcggcggcggcggcggccgcgcaggactccggcgaccggccggcgaggttcgatctgtgcaggcagaagctggcgaggctcatgtccacccgaaggcggtgcacgtacgacgactactactccgtcgcattcgactag</cdnaseq>|
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| − | AA = <aaseq>MGVLRSTQSMQAEVEEMRAALLHGHGGGAAAAAAAGWRPSAGDA DVKRTAGGDGGAAGPRTVCVTGGISFVGFAVVDRLLRHGYTVRLALETQEDLDKLREM EMFGEDGRDGVWTVMANVTDPESLHRAFDGCAGVFHTSAFVDPGGMSGYTKHMASLEA KAAEQVIEACVRTESVRKCVFTSSLLACVWRQNYPHDRRFPTIIDENCWSDESFCRDN KLWFALGKTAAEKTAWRAARGRDLKLVTVCPALVTGPGFRRRNSTASIAYLKGARAML ADGLLATASVETVAEAHVRVYEAMGDNTAGGRYICYDHVVKRPEEFAELERQLGIPRR AAAAAAAQDSGDRPARFDLCRQKLARLMSTRRRCTYDDYYSVAFD</aaseq>|
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| − | DNA = <dnaseqindica>6005..6333#5744..5897#5376..5576#2543..2718#1..280#atgggcgtcctgaggagcacgcagagcatgcaggcggaggtggaggagatgcgggcggcgctgctgcatggccacgggggcggggcggcggcggcggcggcggccgggtggcgcccctcggccggcgacgcggacgtcaagcgcaccgcgggcggcgacgggggcgcggcggggccgcgcaccgtctgcgtcacgggcggcatctccttcgtcgggttcgccgtcgtcgaccgcctgctccggcacggctacaccgtgcgcctcgccctcgagacccaaggtcagctccaaatccagctcacccccacatcttttaccgtttacctgttcgattacctcctttgccttgtttggctgtttcgcttctgtgtcaccgacatgtgggccccggtcgccacatgtatctcaaagccccggccacttgtgccaatacattccacgtatttttattattttatatacctcggcaaaaaaaacaaacatgaaaaaacaaaaacgctcgtgcctagcatgacgtaccccttcgctagttcgctgtatccaatttctggactttatctcgcagcagtagattttacttctaccagcttattgagccgatcagtcttccaatccatcttaattaccactcgtttttggacaaaaggcaagcgacttcccagcataaaccaagcttagttgctgttcaagccggattagcagatactctgcgtctcctcccgaagtgttgttggggatggaaccttgccacctaccgctgcactgcgggtttggtgtgctacctgcagtccggtcaccatttcgtcacatctccatagaccggttgctagcttggagtagctaggaactactacgctgcatcttcccgtcagtagaatttgctttcgttggataatggcgtaacgctctttgacggtgtatatccatttgcgaatagagaccaaactaaaaaaaaaaatattggcataatgctctgctcgggctggtgggtggtatggcagccactttcctatgcacagtgtgcatgtagccgtgagagtatacctaatgatgattgcttttatgctttggtgaatataaccaacttaattacctacttggaaatgacagaccgaaagaaacgtgcgaaagctaaagagaggaacatatacgtttatgtctaattcgccacacacaaggaaaaacggaagaaaaaaacaaatgctaacaaggagtaggattgatgggaggtggtagctagactgaattagtttaagacgtacgcaaccatctctatgatcgatcagcgttgaacatttgactactcgtatatataaagctaccgggcgtatgatttcctcgtgtagtagttagttattctcgcattcgttttttcctcgtgctatatgcacaatctttggatgcattcaaaacattctgattgtgactttctccatataccaatgggctcatgcttatggcgtaacattaaacttttcgccggtttttattcttgttctggtggtcagccggtttcttggaaagaggaaattgatcgtagtttcaaagtctcctatacgactcgtccagttggggatgaaacaatctacaaatcaaacactagcagagacgtacgcagaatttttttttccactggcagcaccatttttctttgacccgaggtagaaatcttcaggtctaccacatcatgattagatttcaaccaaccagtgctccaattcggatacccattttaacattgcgccactaattagtcagctttgtgttgcttagttgagccatactttacgcgttctgatccttcacatcagctaacaaatccaatccttcccctgaaccaaaatctttcagtactgctcccttcaattccctagcaagaaagcagagaacctttcgacaaacaaatagtgttgatactaattataagtgggtgctggacttctgatagcttcgtttcaacagtctacacccaagggccattaggaaaatttatctgatgatagcttagctccaatcttaatctggaacaacatgtctggtccattaggcctccactggaatagaggaatatcacgggagttgaactaattcttgtgaaaatcctgtagaagtcatgcctttatctttatgctatcactaccattctctaagtcatcgcggataagaaaccatgggcaagaaaattttcagaatatcaaaaagataaaatcctctctccggtttcccagccagctacgaatagttggaaacacacctgctgcttggctatgcttataatagtggaacatgattcatatttctggttttcaaatggagtcaggtgagaaggatggaacgagattattgataaagtaccgttccaaaaacgttcttatccttatcggacaattatcaatgatagataacagaaagtaaaatcacacggcatcatcgctattattttattaaagcaacatggcttctttttttttgtgagtattcatgcaaccatcgtaatcttgacgtgtaataatttggcttattgctatttgctacatcgcagaggacctggacaagctgagggagatggagatgttcggcgaggacggccgggacggcgtgtggacggtgatggcgaacgtgacggaccccgagagcctgcaccgggcgttcgacggatgcgccggcgtgtttcacacctcggcgttcgtggatccggggggcatgtccggctacacggtgagtgcaccaaactcggtccctaaccttaagatcctcgcaactactacacctacctatgttatgtgttccctaatgctgtcacagaagtcactaagtaagttagttatgtgttccctaatgctgtcatatagaagtcactaaataagttaggttagtaaaatatagaaaaaatcatgcaaacaaaacagagtgaacttgaagagaatggcggaaaacagagtatatatgctccatctaacattctaactcaaggcgcaactgaacatcaaagattgatgttgaatgtttggtgtactataaaaagagcaatattatttatggtcgttaagaaggtatcaagaagtactacaattttactagaagacactaaattttacaattaaaaaaagatacctcctgatacaccataaaataactcgtaaaaggaacattgcgattttctttgtggtgatgtggtggggacccagtaacagtctgaacttctggaaatcaagcaattaattgacacataacggcgttcgggaatttttgaagccaatggacatagatcattttcgtaattaatggcatgcacatcacagagcctcagacatctggcccagagaaatttgtacagttgagctgtagagtttgcatctacatgtacatggcctttggtactgcacgtggaggcactcatgcctcaaaattcagaaagattttgtaagaccgagtgacgagactctgtagttcgtgtaccacacggggaagattctgctcattcttggcttctcctcccaagagacaccaaatagtttatggtacccgttatctagaaacgttgggcgctgcggtgtccatcacagatgttaacggttataccttccatggttacttaaaaactgagaccttgctgattgtcgattccattggtcgtacagtagtatcaagatttcaaaaatgacaaaccagtactattgactgatgtgaagagcggcagatgccataaaactagccttatttcgagcagacttaataaaaaaagggtttatagaaaaaggctcaatcaccaactcgtaccttcaaggattattttgtttacgagccaatgtcttgtttgttgccaaaggcagggtgggagaggatcttgaggctggacagtcctccttgtcgccctttcgttgacattttgccaaacctgaagtcctcctgatgggagcaggttgtaactggtagtcctgcctatgcagatggtcttgcacctatctgatccatgaagtagagcttccggagcacagcattggtgggcgcacgcctgtcaactccgtcacctaattcattgacagaaaatcgcttgtccatagcaggggaccgggtttattatctgataagaacgggtaatcaggtaggattagtatctgagtgtgatgagagtccgcattgcagcaagagttggacaatacaaccaccgaatccacttcggttgggtacttccaagcagccgtcagaatcatgacgaccttagtgtaaccaaggcgattaaagaacagagatgccatccagttgcgtcctactctgcaacaatatatactccctctcttttagatttattaacatatatataaatataggcaatattataaaatcttatattgtgaaatgcacaatagagggagtatgctagtaataggctttattttactgttcttgaatacctttattttttttaccattcttgttccacacaatataacctctttttaatggaagaaatttgctgcaatttggaggaaatgaactggttcaatgaaaatcctgtaaaatttatgcgtttcaaagtagccctacgttcgattttgctatatatttgtcgacaaattttcccctaaaaatttaacagatgtaattacagtacaatcgtagtgtaattacactataacttgcatgtaattacactgtaactatagtgtaacttgtatgtaactttcaaaaatctctccgtaatatgttatttcgataaaatggaggtcgtgggaacaaattctttcacatatgtgtgtactatgatttgttttcttcctcaccaaaacaaatcttgtaatagatctaacaattcaaaattatgtgaaacttacatataagttacactgtagttacatgcaagttacagtgtaattacatatatgttacagtgtaattacattatgattgtattataattacatctgtcaaatttttaggagaaaatttgtcaacaaatgtataggtagtcccccctacgtttggtatctcaatcacactagtgtttatcatttatctgcagtaagagcctattgtagctaaaataaaccttaccaaattttggtattgccaaaattttggcaagatgacaatattgcgaaaattttggcaggatatcttatgtatttacttaatttggcaacaaactaaatatagatattttttaacaactttacattaaaaaaatggtatggttgaaaatagcatcaaagtgaacgggcctgattttcgctagtggaccgttcgctctcacccatcattcctggtagtcaattcttgtgtagtcatggtaatttgttgtttagtagcgattgggcgtacgattgaggcggtgtaattaactttttccctgttaatgtccaactctcgaacagaaacatatggcaagcttggaggcgaaagcagcagagcaggtgatcgaggcgtgcgtgaggacagagtccgtcagaaaatgcgtcttcacgtcgtcgttgctagcatgtgtatggaggcaaaattaccctcatgaccgacggtttcctaccatcatcgacgagaactgctggagcgatgagagcttctgccgtgacaacaaggtgagtttgttactgtattaaaaaaaaaaggagggtttgttcagtgacacggaagcgcacttgcaatggtggatgcataagcatattttatcacccaccaactgaatcttttttttttcttgtggaaaatttgtgcaatctaatgactttctggataaacttttcagctgtggtttgcactgggcaagacggcagcggagaagacggcgtggagggcagccaggggtagggacctgaagctggtcaccgtctgcccggcgctggtcaccggtccgggattccgccgccgcaactccaccgcctccatcgcctacctcaaaggtacactacaggcttcgatacgagcatgtaaactacgatcggagaaaggaacatggtgtgcctttgtgcttgtgcagtacacactgacatgtcttgcgtgtcgacaggggctcgcgccatgctcgccgacggcctgctcgcgacggcgagcgtggagacggtggcggaggcgcacgtccgggtgtacgaggcgatgggcgacaacacggccggcgggaggtacatctgctacgaccacgtggtgaagaggcccgaggagttcgcggagctggagcgccagctggggatcccgcgcagagcggcggcggcggcggccgcgcaggactccggcgaccggccggcgaggttcgatctgtgcaggcagaagctggcgaggctcatgtccacccgaaggcggtgcacgtacgacgactactactccgtcgcattcgactag</dnaseqindica>|
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| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050209.1 RefSeq:Os01g0639200]|
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| − | }}
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| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
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| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 1]]
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| − | [[Category:Chromosome 1]]
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