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| − | {{JaponicaGene|
| + | The rice '''Os01g0639200''' was reported as ''' snl6''' in 2010 <ref name="ref1" /> by researchers from the USA. |
| − | GeneName = Os01g0639200|
| + | <br> |
| − | Description = NAD-dependent epimerase/dehydratase family protein|
| |
| − | Version = NM_001050209.1 GI:115438788 GeneID:4326581|
| |
| − | Length = 6333 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os01g0639200, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''Os01g0639200 <=> snl6''' |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | <br> |
| − | |
| + | ===Function=== |
| − | Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|
| + | *'''Snl6''' is required for pathogenesis-related gene expression. In contrast to previously described CCR family members, disruption of Snl6 does not result in an obvious morphologic phenotype. |
| − | AP = Chromosome 1:27396786..27403118|
| + | <br> |
| − | CDS = 27396786..27397114,27397222..27397375,27397543..27397743,27400401..27400576,27402839..27403118<br>|
| + | ===Expression=== |
| − | GCID = <gbrowseImage1>
| + | *'''Snl6''' mutants have reduced lignin content and increased sugar extractability, an important trait for the production of cellulosic biofuels. |
| − | name=NC_008394:27396786..27403118
| + | <br> |
| − | source=RiceChromosome01
| + | |
| − | preset=GeneLocation
| + | ==Labs working on this gene== |
| − | </gbrowseImage1>| | + | *The University of North Carolina at Chapel Hill, United States of America |
| − | GSID = <gbrowseImage2>
| + | <br> |
| − | name=NC_008394:27396786..27403118 | + | ==References== |
| − | source=RiceChromosome01
| + | <references> |
| − | preset=GeneLocation
| + | <ref name="ref1"> |
| − | </gbrowseImage2>| | + | Characterization of a histidine- and alanine-rich protein showing |
| − | CDNA = <cdnaseq>atgggcgtcctgaggagcacgcagagcatgcaggcggaggtggaggagatgcgggcggcgctgctgcatggccacgggggcggggcggcggcggcggcggcggccgggtggcgcccctcggccggcgacgcggacgtcaagcgcaccgcgggcggcgacgggggcgcggcggggccgcgcaccgtctgcgtcacgggcggcatctccttcgtcgggttcgccgtcgtcgaccgcctgctccggcacggctacaccgtgcgcctcgccctcgagacccaagaggacctggacaagctgagggagatggagatgttcggcgaggacggccgggacggcgtgtggacggtgatggcgaacgtgacggaccccgagagcctgcaccgggcgttcgacggatgcgccggcgtgtttcacacctcggcgttcgtggatccggggggcatgtccggctacacgaaacatatggcaagcttggaggcgaaagcagcagagcaggtgatcgaggcgtgcgtgaggacagagtccgtcagaaaatgcgtcttcacgtcgtcgttgctagcatgtgtatggaggcaaaattaccctcatgaccgacggtttcctaccatcatcgacgagaactgctggagcgatgagagcttctgccgtgacaacaagctgtggtttgcactgggcaagacggcagcggagaagacggcgtggagggcagccaggggtagggacctgaagctggtcaccgtctgcccggcgctggtcaccggtccgggattccgccgccgcaactccaccgcctccatcgcctacctcaaaggggctcgcgccatgctcgccgacggcctgctcgcgacggcgagcgtggagacggtggcggaggcgcacgtccgggtgtacgaggcgatgggcgacaacacggccggcgggaggtacatctgctacgaccacgtggtgaagaggcccgaggagttcgcggagctggagcgccagctggggatcccgcgcagagcggcggcggcggcggccgcgcaggactccggcgaccggccggcgaggttcgatctgtgcaggcagaagctggcgaggctcatgtccacccgaaggcggtgcacgtacgacgactactactccgtcgcattcgactag</cdnaseq>|
| + | |
| − | AA = <aaseq>MGVLRSTQSMQAEVEEMRAALLHGHGGGAAAAAAAGWRPSAGDA DVKRTAGGDGGAAGPRTVCVTGGISFVGFAVVDRLLRHGYTVRLALETQEDLDKLREM EMFGEDGRDGVWTVMANVTDPESLHRAFDGCAGVFHTSAFVDPGGMSGYTKHMASLEA KAAEQVIEACVRTESVRKCVFTSSLLACVWRQNYPHDRRFPTIIDENCWSDESFCRDN KLWFALGKTAAEKTAWRAARGRDLKLVTVCPALVTGPGFRRRNSTASIAYLKGARAML ADGLLATASVETVAEAHVRVYEAMGDNTAGGRYICYDHVVKRPEEFAELERQLGIPRR AAAAAAAQDSGDRPARFDLCRQKLARLMSTRRRCTYDDYYSVAFD</aaseq>|
| + | interaction with calreticulin in rice |
| − | DNA = <dnaseqindica>6005..6333#5744..5897#5376..5576#2543..2718#1..280#atgggcgtcctgaggagcacgcagagcatgcaggcggaggtggaggagatgcgggcggcgctgctgcatggccacgggggcggggcggcggcggcggcggcggccgggtggcgcccctcggccggcgacgcggacgtcaagcgcaccgcgggcggcgacgggggcgcggcggggccgcgcaccgtctgcgtcacgggcggcatctccttcgtcgggttcgccgtcgtcgaccgcctgctccggcacggctacaccgtgcgcctcgccctcgagacccaaggtcagctccaaatccagctcacccccacatcttttaccgtttacctgttcgattacctcctttgccttgtttggctgtttcgcttctgtgtcaccgacatgtgggccccggtcgccacatgtatctcaaagccccggccacttgtgccaatacattccacgtatttttattattttatatacctcggcaaaaaaaacaaacatgaaaaaacaaaaacgctcgtgcctagcatgacgtaccccttcgctagttcgctgtatccaatttctggactttatctcgcagcagtagattttacttctaccagcttattgagccgatcagtcttccaatccatcttaattaccactcgtttttggacaaaaggcaagcgacttcccagcataaaccaagcttagttgctgttcaagccggattagcagatactctgcgtctcctcccgaagtgttgttggggatggaaccttgccacctaccgctgcactgcgggtttggtgtgctacctgcagtccggtcaccatttcgtcacatctccatagaccggttgctagcttggagtagctaggaactactacgctgcatcttcccgtcagtagaatttgctttcgttggataatggcgtaacgctctttgacggtgtatatccatttgcgaatagagaccaaactaaaaaaaaaaatattggcataatgctctgctcgggctggtgggtggtatggcagccactttcctatgcacagtgtgcatgtagccgtgagagtatacctaatgatgattgcttttatgctttggtgaatataaccaacttaattacctacttggaaatgacagaccgaaagaaacgtgcgaaagctaaagagaggaacatatacgtttatgtctaattcgccacacacaaggaaaaacggaagaaaaaaacaaatgctaacaaggagtaggattgatgggaggtggtagctagactgaattagtttaagacgtacgcaaccatctctatgatcgatcagcgttgaacatttgactactcgtatatataaagctaccgggcgtatgatttcctcgtgtagtagttagttattctcgcattcgttttttcctcgtgctatatgcacaatctttggatgcattcaaaacattctgattgtgactttctccatataccaatgggctcatgcttatggcgtaacattaaacttttcgccggtttttattcttgttctggtggtcagccggtttcttggaaagaggaaattgatcgtagtttcaaagtctcctatacgactcgtccagttggggatgaaacaatctacaaatcaaacactagcagagacgtacgcagaatttttttttccactggcagcaccatttttctttgacccgaggtagaaatcttcaggtctaccacatcatgattagatttcaaccaaccagtgctccaattcggatacccattttaacattgcgccactaattagtcagctttgtgttgcttagttgagccatactttacgcgttctgatccttcacatcagctaacaaatccaatccttcccctgaaccaaaatctttcagtactgctcccttcaattccctagcaagaaagcagagaacctttcgacaaacaaatagtgttgatactaattataagtgggtgctggacttctgatagcttcgtttcaacagtctacacccaagggccattaggaaaatttatctgatgatagcttagctccaatcttaatctggaacaacatgtctggtccattaggcctccactggaatagaggaatatcacgggagttgaactaattcttgtgaaaatcctgtagaagtcatgcctttatctttatgctatcactaccattctctaagtcatcgcggataagaaaccatgggcaagaaaattttcagaatatcaaaaagataaaatcctctctccggtttcccagccagctacgaatagttggaaacacacctgctgcttggctatgcttataatagtggaacatgattcatatttctggttttcaaatggagtcaggtgagaaggatggaacgagattattgataaagtaccgttccaaaaacgttcttatccttatcggacaattatcaatgatagataacagaaagtaaaatcacacggcatcatcgctattattttattaaagcaacatggcttctttttttttgtgagtattcatgcaaccatcgtaatcttgacgtgtaataatttggcttattgctatttgctacatcgcagaggacctggacaagctgagggagatggagatgttcggcgaggacggccgggacggcgtgtggacggtgatggcgaacgtgacggaccccgagagcctgcaccgggcgttcgacggatgcgccggcgtgtttcacacctcggcgttcgtggatccggggggcatgtccggctacacggtgagtgcaccaaactcggtccctaaccttaagatcctcgcaactactacacctacctatgttatgtgttccctaatgctgtcacagaagtcactaagtaagttagttatgtgttccctaatgctgtcatatagaagtcactaaataagttaggttagtaaaatatagaaaaaatcatgcaaacaaaacagagtgaacttgaagagaatggcggaaaacagagtatatatgctccatctaacattctaactcaaggcgcaactgaacatcaaagattgatgttgaatgtttggtgtactataaaaagagcaatattatttatggtcgttaagaaggtatcaagaagtactacaattttactagaagacactaaattttacaattaaaaaaagatacctcctgatacaccataaaataactcgtaaaaggaacattgcgattttctttgtggtgatgtggtggggacccagtaacagtctgaacttctggaaatcaagcaattaattgacacataacggcgttcgggaatttttgaagccaatggacatagatcattttcgtaattaatggcatgcacatcacagagcctcagacatctggcccagagaaatttgtacagttgagctgtagagtttgcatctacatgtacatggcctttggtactgcacgtggaggcactcatgcctcaaaattcagaaagattttgtaagaccgagtgacgagactctgtagttcgtgtaccacacggggaagattctgctcattcttggcttctcctcccaagagacaccaaatagtttatggtacccgttatctagaaacgttgggcgctgcggtgtccatcacagatgttaacggttataccttccatggttacttaaaaactgagaccttgctgattgtcgattccattggtcgtacagtagtatcaagatttcaaaaatgacaaaccagtactattgactgatgtgaagagcggcagatgccataaaactagccttatttcgagcagacttaataaaaaaagggtttatagaaaaaggctcaatcaccaactcgtaccttcaaggattattttgtttacgagccaatgtcttgtttgttgccaaaggcagggtgggagaggatcttgaggctggacagtcctccttgtcgccctttcgttgacattttgccaaacctgaagtcctcctgatgggagcaggttgtaactggtagtcctgcctatgcagatggtcttgcacctatctgatccatgaagtagagcttccggagcacagcattggtgggcgcacgcctgtcaactccgtcacctaattcattgacagaaaatcgcttgtccatagcaggggaccgggtttattatctgataagaacgggtaatcaggtaggattagtatctgagtgtgatgagagtccgcattgcagcaagagttggacaatacaaccaccgaatccacttcggttgggtacttccaagcagccgtcagaatcatgacgaccttagtgtaaccaaggcgattaaagaacagagatgccatccagttgcgtcctactctgcaacaatatatactccctctcttttagatttattaacatatatataaatataggcaatattataaaatcttatattgtgaaatgcacaatagagggagtatgctagtaataggctttattttactgttcttgaatacctttattttttttaccattcttgttccacacaatataacctctttttaatggaagaaatttgctgcaatttggaggaaatgaactggttcaatgaaaatcctgtaaaatttatgcgtttcaaagtagccctacgttcgattttgctatatatttgtcgacaaattttcccctaaaaatttaacagatgtaattacagtacaatcgtagtgtaattacactataacttgcatgtaattacactgtaactatagtgtaacttgtatgtaactttcaaaaatctctccgtaatatgttatttcgataaaatggaggtcgtgggaacaaattctttcacatatgtgtgtactatgatttgttttcttcctcaccaaaacaaatcttgtaatagatctaacaattcaaaattatgtgaaacttacatataagttacactgtagttacatgcaagttacagtgtaattacatatatgttacagtgtaattacattatgattgtattataattacatctgtcaaatttttaggagaaaatttgtcaacaaatgtataggtagtcccccctacgtttggtatctcaatcacactagtgtttatcatttatctgcagtaagagcctattgtagctaaaataaaccttaccaaattttggtattgccaaaattttggcaagatgacaatattgcgaaaattttggcaggatatcttatgtatttacttaatttggcaacaaactaaatatagatattttttaacaactttacattaaaaaaatggtatggttgaaaatagcatcaaagtgaacgggcctgattttcgctagtggaccgttcgctctcacccatcattcctggtagtcaattcttgtgtagtcatggtaatttgttgtttagtagcgattgggcgtacgattgaggcggtgtaattaactttttccctgttaatgtccaactctcgaacagaaacatatggcaagcttggaggcgaaagcagcagagcaggtgatcgaggcgtgcgtgaggacagagtccgtcagaaaatgcgtcttcacgtcgtcgttgctagcatgtgtatggaggcaaaattaccctcatgaccgacggtttcctaccatcatcgacgagaactgctggagcgatgagagcttctgccgtgacaacaaggtgagtttgttactgtattaaaaaaaaaaggagggtttgttcagtgacacggaagcgcacttgcaatggtggatgcataagcatattttatcacccaccaactgaatcttttttttttcttgtggaaaatttgtgcaatctaatgactttctggataaacttttcagctgtggtttgcactgggcaagacggcagcggagaagacggcgtggagggcagccaggggtagggacctgaagctggtcaccgtctgcccggcgctggtcaccggtccgggattccgccgccgcaactccaccgcctccatcgcctacctcaaaggtacactacaggcttcgatacgagcatgtaaactacgatcggagaaaggaacatggtgtgcctttgtgcttgtgcagtacacactgacatgtcttgcgtgtcgacaggggctcgcgccatgctcgccgacggcctgctcgcgacggcgagcgtggagacggtggcggaggcgcacgtccgggtgtacgaggcgatgggcgacaacacggccggcgggaggtacatctgctacgaccacgtggtgaagaggcccgaggagttcgcggagctggagcgccagctggggatcccgcgcagagcggcggcggcggcggccgcgcaggactccggcgaccggccggcgaggttcgatctgtgcaggcagaagctggcgaggctcatgtccacccgaaggcggtgcacgtacgacgactactactccgtcgcattcgactag</dnaseqindica>|
| + | </ref> |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050209.1 RefSeq:Os01g0639200]|
| + | |
| − | }}
| + | </references> |
| − | [[Category:Genes]] | + | <br> |
| − | [[Category:Japonica mRNA]]
| + | ==Structured Information== |
| − | [[Category:Oryza Sativa Japonica Group]] | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 1]] |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 1]]
| |
| − | [[Category:Chromosome 1]]
| |
