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| − | Please input one-sentence summary here.
| + | The rice gene Os04g0557800 was reported as '''''OSB1''''' in 2001<ref name="ref1" /> by researchers from Japan. |
| | | | |
| | ==Annotated Information== | | ==Annotated Information== |
| | + | ===Gene Symbol=== |
| | + | *'''''Os04g0557800 <=> OSB1,OsOSB1 |
| | ===Function=== | | ===Function=== |
| − | Please input function information here.
| + | * '''''OSB1''''' locates on the Purple leaf (Pl) locus of rice (Oryza sativa L.) which affects regulation of anthocyanin biosynthesis in various plant tissues. |
| | | | |
| − | ===Expression=== | + | * '''''OSB1''''' appeared to be allelic to the previously isolated R homologue, '''''Ra1''''', but showed a striking difference at the C-terminus because of a 2-bp deletion. |
| − | Please input expression information here.
| + | * A transient complementation assay showed that the anthocyanin pathway is inducible by '''''OSB1''''' or '''''OSB2'''''. |
| | + | |
| | + | ===Expression === |
| | | | |
| | ===Evolution=== | | ===Evolution=== |
| − | Please input evolution information here.
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| | | | |
| | You can also add sub-section(s) at will. | | You can also add sub-section(s) at will. |
| − |
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| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | Please input related labs here.
| + | *Research Institute for Bioresources, Okayama University, Kurashiki, Okayama, 710-0046 Japan |
| − | | + | *Kyusyu Agricultural Experimental Station, Nishigoshi, Kumamoto, 861-1192 Japan |
| | ==References== | | ==References== |
| − | Please input cited references here.
| + | <references> |
| | + | * <ref name="ref1"> |
| | + | Sakamoto W, Ohmori T, Kageyama K, et al. The Purple leaf (Pl) locus of rice: The Plw allele has a complex organization and includes two genes encoding basic helix-loop-helix proteins involved in anthocyanin biosynthesis[J]. Plant and Cell Physiology, 2001, 42(9): 982-991. |
| | + | </ref> |
| | + | </references> |
| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]] |
| − | GeneName = Os04g0557800|
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| − | Description = Similar to Ra|
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| − | Version = NM_001060067.1 GI:115459863 GeneID:4336636|
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| − | Length = 6257 bp|
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| − | Definition = Oryza sativa Japonica Group Os04g0557800, complete gene.|
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| − | Source = Oryza sativa Japonica Group
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| − | | |
| − | ORGANISM Oryza sativa Japonica Group
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| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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| − | clade; Ehrhartoideae; Oryzeae; Oryza.
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| − | |
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| − | Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|
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| − | AP = Chromosome 4:28347891..28354147|
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| − | CDS = 28348209..28348241,28348371..28348781,28349070..28349807,28350042..28350101,28350508..28350522<br>,28350754..28350850,28352412..28352666,28353003..28353118|
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| − | GCID = <gbrowseImage1>
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| − | name=NC_008397:28347891..28354147
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| − | source=RiceChromosome04
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| − | preset=GeneLocation
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| − | </gbrowseImage1>|
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| − | GSID = <gbrowseImage2>
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| − | name=NC_008397:28347891..28354147
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| − | source=RiceChromosome04
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| − | preset=GeneLocation
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| − | </gbrowseImage2>|
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| − | CDNA = <cdnaseq>atggaagagacccctctgccatccgggaagaacttcaggagccagcttgctgctgcagcgaggagcatcaattggacgtatgccatattttggtccatttcaaccagccgcccaggagttctgacttggaaggacggcttctacaacggcgagataaagacgaggaagatcacgaactccatgaacctcatggccgacgagctggtcctgcagagaagcgagcagctgagggagctctacgactctctcctctccggcgagtgcggccaccgagcgaggaggcccgtcgctgcactgttgccggaagatctcggggacacggaatggtactacgtcgtctgcatgacctacgccttcggcccccgccaagggttgccaggcaaaagcttcgcaagcaatgaatttgtttggctgacaaacgctcagtctgcagatagaaaactattccatcgcgcgcttatagcaaagagtgcatctattaagacaatcgtctgcgtgccatttatcatgcatggtgtccttgagctcgggaccactgatccgatttcggaggacccggctctcgtcgaccgtatcgcggcgtcgttctgggatacgccgccccgcgcggcgttctcgtcggaggcgggagacgccgacatcgtcgtcttcgaagacctcgaccatggcaacgccgccgtcgaagcgacgacgacgacggtcccgggggagccacacgcggtagccggcggcgaggtcgccgagtgcgagcccaactccgacaacgacctcgagcagatcaccatggacgacatcggcgagctctacagcctctgcgaggagctggacgtcgtgcgccctctcgacgacgacagtagcagctgggcggtcgcggatccctggtcgtcctttcagctagttccgacgtcttctccggcgccggatcaggcgccggcggcggaagctactgacgtcgacgacgtcgtcgtcgccgctttagacagtagctccattgatggatcttgcaggccgtcgccgtcgagttttgtggcgtggaagaggacggcggactcggacgaggtgcaggccgtgccgctcatcagcggagagccgccacagaagttgctgaagaaagctgtcgccggagccggtgcctggatgaacaatggtgacagcagcgcggcggcgatgacgactcaaggaagcagcatcaagaaccatgtcatgtcagagagaaggcgccgggagaagctcaacgagatgttcctgattctcaaatcagttgtcccgtccattcacagggtggacaaagcatccattctcgcagaaacgatagcctacctcaaagagctggagaaaagagtggaagagctggaatccagcagccaaccatcgccatgtccattggaaacaagaagcaggcgaaagtgccgtgagatcactgggaagaaggtttctgcaggagcgaagagaaaggcgccggcgccggaggtggccagcgacgacgacaccgacggggagcggcgccattgtgtgagcaacgtgaacgtcaccatcatggacaacaaggaggttctcctcgagctgcaatgccagtggaaggaattgctgatgacgagagtgttcgacgcgatcaagggagtctccctggatgtcctctcggtgcaggcatcaacatcggatggtctccttggactgaagatacaagccaagtttgcctcatctgctgccgtcgaacctggatga</cdnaseq>|
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| − | AA = <aaseq>MEETPLPSGKNFRSQLAAAARSINWTYAIFWSISTSRPGVLTWK DGFYNGEIKTRKITNSMNLMADELVLQRSEQLRELYDSLLSGECGHRARRPVAALLPE DLGDTEWYYVVCMTYAFGPRQGLPGKSFASNEFVWLTNAQSADRKLFHRALIAKSASI KTIVCVPFIMHGVLELGTTDPISEDPALVDRIAASFWDTPPRAAFSSEAGDADIVVFE DLDHGNAAVEATTTTVPGEPHAVAGGEVAECEPNSDNDLEQITMDDIGELYSLCEELD VVRPLDDDSSSWAVADPWSSFQLVPTSSPAPDQAPAAEATDVDDVVVAALDSSSIDGS CRPSPSSFVAWKRTADSDEVQAVPLISGEPPQKLLKKAVAGAGAWMNNGDSSAAAMTT QGSSIKNHVMSERRRREKLNEMFLILKSVVPSIHRVDKASILAETIAYLKELEKRVEE LESSSQPSPCPLETRSRRKCREITGKKVSAGAKRKAPAPEVASDDDTDGERRHCVSNV NVTIMDNKEVLLELQCQWKELLMTRVFDAIKGVSLDVLSVQASTSDGLLGLKIQAKFA SSAAVEPG</aaseq>|
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| − | DNA = <dnaseqindica>5907..5939#5367..5777#4341..5078#4047..4106#3626..3640#3298..3394#1482..1736#1030..1145#tgctagatctctcctccacatccggactctctctatcaaatttacgtaagcgcagtgagaaaaataattagctgggccaccagcatactgttggcgtacagctgcaaatacctgtcgagctaatcttggttaaaatgttggtttagtgctgtttcacaggtggtataccctgcttttgttaatagtacctcgcgactctgctgtatatttctgtcagtgtcaaatacaaatctacttcaattcgtcggcacagattctgttgcttaattgctggtgaggaggagcactcactatatagctcaatccatcttcctctgcaaaacgtacgcacgacactacgacactctggttgcgatcgattatcactccctgatcgcgagttcttggtctgcgagcgtctgcaattaaggtacgctataccctaactccctttattttccatatctgtataactaagtttctctttgtttttcttagggaagagttcctctttgttttgacgaggatcgaggattgtttggacgaaccagcagcagcgtacgtgccaatttcattgatagtcgctgtatctgatttacaggttattgctttatttcttcctatattttcagtttttagtttgttactattagtttttggtttttttattaagaaacctaaccagcttcattggaagtaattaaagttatgtaacttatgttcgatctttaatataagcgcatgcatgcactagctagcttaacgcacatagaggcatacctattattaattggaagtaattaaagttatgttcgacctttaatataagcgcatgcatgcactagctagctagccttacacacatagaggcagtcctatcatagaatggttacatataaaaatttgttcatatatgccttattctacatatgctgttcattttcttgcgtactaacctcagtttactaccgtatgcatatatatacaagcaggaaaaatacatacaacagtgtgtggtaaagtatactactattactggagtactaattaatggaagagacccctctgccatccgggaagaacttcaggagccagcttgctgctgcagcgaggagcatcaattggacgtatgccatattttggtccatttcaaccagccgcccagggtaatagaccatatatatatatcatgcatgacacgccttaatttccactacctataaattcaagaaatctttacatctctacataatccatgttaccatgtataaatatcttgaaattttacaaaagatggtatagacgattattctgtaaatgctgtaaccttttttcgaaaaaagttttgtaattatttgattgatacatgagaaatgacaaacaaacggttgtgcgcgcatgcatgtacagtagtgcgcgcgcgcgcgcgcgcacacacacacacttaattgggctgtaaaaaatccagttcgtacatataatttcgtcactttgttttgtagagttctgacttggaaggacggcttctacaacggcgagataaagacgaggaagatcacgaactccatgaacctcatggccgacgagctggtcctgcagagaagcgagcagctgagggagctctacgactctctcctctccggcgagtgcggccaccgagcgaggaggcccgtcgctgcactgttgccggaagatctcggggacacggaatggtactacgtcgtctgcatgacctacgccttcggcccccgccaagggtgcgtatggtaacttcactccacagagcacactatttcatttgcatatgctaccaattataatccactatgaagagactgcacctattttattttattgcataaaacatgatagtagaaaattataatccctaaaggcactgaagagaaattatacttctcacgcattggctacacccttcgtaaaaaaaaaaaacttaacctagttgggggatgtcctatcctggttttcctttcatggaggaataactagaaaacaaacgtgctggttggcgcaccaattaatatagcctgtggtggtattgttggtcctgttcgagatacataaattgatcattttttttcttaagagatttgaagactttacactatagaaacaaaaacaaagaggctaataaaaaaaagaaaatattggaatgaaatttaccaccagaacatatggtaatagtacccattggaaatcatttagttagacagattccacaaagttaagttagaataagtggtgtaagataagtcaattgatcacatggatagaccaacagtatgtgaaattcatatacttaagagctagattaaatgtatggggttatctacaagattagttttatttttattgatcaattctaaaagatatatgaaatgtaatatttgtgatattccaatttgaaaaaagaacagtatggaaaaaaggtataattcttaccaatatgcaaacgtatatcctctataagcaagttttaaggggaccagcatatgtgggggtacattcttttgatcccatctaatcggaatgttctggatgttgtgatgttaaggtactacttttttttaaaaaaaaagaactattaaggtactatttgcttatagaattatccctaaacacttctgtagttttctatttttcttgatcttctgtaattttttccttaagacgaaatccaagatttatttgataagccatgggggccacatggcctaatcaaaagccggcataaccgtcggctttagattagtagattgtacttagtagtatattttctaatatcacaaaatttttgtatgtagttatattagaaaaggaagcaagtactatattattgagaccatataacgcgatcaagaattcaagactcatgtctccagtttttttttttaaaaaaaagacgtgacccacgaccacaatgttcattaagaggtttgaaattaaaaatgagattgggggagagataaattccccgatattttcttttttactagatgaaaactcaaatggaagatgaattgagggtgtgtttagttcacgctaaaattgaaagtttggttgaaattggaacgatgtgataaaaaattagaagtttatttgtgtaggaaagttttgatgtgataaaaaaattgaaagtttttttaaaaaagtttggaaactaaactctgcctgaggctgctagctggtcaacctgcaggctgcagcctgctgccagtctcttacagtatcttgatatgattgtgctagtatactgtaacgaactgttgttctctcgctattgatgaaccgtgtcaggttgccaggcaaaagcttcgcaagcaatgaatttgtttggctgacaaacgctcagtctgcagatagaaaactattccatcgcgcgcttatagcaaaggtactgagttactactacatgagtagtaccatttagtacctattaattcttgcgctctgaatggcaatatctatgaattaagaatttgtattatattcttctcccttttcatatgtatataatctcccgttcacgcgatattgccacatcgtctctcgattactcttttttttttgtttttaattatgtatgacgacgatggtgctgcatgctgatctacctacttcacagagtgcatctattaaggtacaatttcatgcgtcatactatgaaatactgcatgcgtatagctactctctccatagcaaaataacgtcattttaaaatatatgtagccaatataagtttactactccctccgtcacataatataagggattttaagtttttgcttacattctttaaccactcgtcttattcaaaaaatttatgcaaatataaaaaaagaaaaaatgtgtttaaagtactttgaataataaagtaagtaaaaaaatctattttttttttgaataagacgagtggtcaaatagtgcaaacaaaaactcaaaatcttatattatgggacggagtgagtagctgactatagcgctgtagctgatgtattgaagtgtactttcacagtttcttattgcagctgtaacttgttttacagacaatcgtctgcgtgccatttatcatgcatggtgtccttgagctcgggaccactgatccggtaagttacaattactccgcctaaacatacaagacctaaaaatgcattgatgcatgtacagcatgatcggctgctgatgaacagcagtacagcacgcatgcattctccttgctattctctcacagcaactcgatcgatcgtgctcccctgcctagccggccatgatcaaattttcgacggatattgtttcgaaatattcgaattaacaatcattagcaaatgtgaatttgctagatttcggaggacccggctctcgtcgaccgtatcgcggcgtcgttctgggatacgccgccccgcgcggcgttctcgtcggaggcgggagacgccgacatcgtcgtcttcgaagacctcgaccatggcaacgccgccgtcgaagcgacgacgacgacggtcccgggggagccacacgcggtagccggcggcgaggtcgccgagtgcgagcccaactccgacaacgacctcgagcagatcaccatggacgacatcggcgagctctacagcctctgcgaggagctggacgtcgtgcgccctctcgacgacgacagtagcagctgggcggtcgcggatccctggtcgtcctttcagctagttccgacgtcttctccggcgccggatcaggcgccggcggcggaagctactgacgtcgacgacgtcgtcgtcgccgctttagacagtagctccattgatggatcttgcaggccgtcgccgtcgagttttgtggcgtggaagaggacggcggactcggacgaggtgcaggccgtgccgctcatcagcggagagccgccacagaagttgctgaagaaagctgtcgccggagccggtgcctggatgaacaatggtgacagcagcgcggcggcgatgacgactcaaggaagcagcatcaagaaccatgtcatgtcagagagaaggcgccgggagaagctcaacgagatgttcctgattctcaaatcagttgtcccgtccattcacagggtaatactaattactacttcatccgtttcacaatgtaagtcattctagtattttacatattcatattgacggtaatgaatctacattcaaattgatgttaataaatctagattcattaccatcaatatgaatatgggaaatgctagaatgacttacattatgaaacggagggagtgtaatttttttagaaccaaatttgtcaaggtaattggagtagtactagctatttagtgcttccaaaatggaatttcaagatgatttgaattcacgagatgtcgcgtgctgcaggtggacaaagcatccattctcgcagaaacgatagcctacctcaaagagctggagaaaagagtggaagagctggaatccagcagccaaccatcgccatgtccattggaaacaagaagcaggcgaaagtgccgtgagatcactgggaagaaggtttctgcaggagcgaagagaaaggcgccggcgccggaggtggccagcgacgacgacaccgacggggagcggcgccattgtgtgagcaacgtgaacgtcaccatcatggacaacaaggaggttctcctcgagctgcaatgccagtggaaggaattgctgatgacgagagtgttcgacgcgatcaagggagtctccctggatgtcctctcggtgcaggcatcaacatcggatggtctccttggactgaagatacaagccaaggtcgtcatctcagcggctaagtagagctcgcagcagaaatgcagcatcgtctatctatctatcaatctctgtatctatacgtctgtttggagttctgatattggccatattattgttgcatggatgcagtttgcctcatctgctgccgtcgaacctggatgattacagaagctctccggaaagctatagcaagctagctagctagaaggttgagatcagtatcgtcttggtcatttgctctcatcttgtttaggaggtaccgggaaataaatcttgtcgctctgatcagtgcctccttactagtctcgtgatctgttgtaagtaatagttagacatgcatatatatcatacaacaacgtttgatcttgcatggtagcatatatatgtacaccacatttcttatatctttactcctttaaaattcagtgaggatggtaagtgatgaatctgccaccccatcaccaactccctaaaattctg</dnaseqindica>|
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| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001060067.1 RefSeq:Os04g0557800]|
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| − | }}
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| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
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| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 4]]
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| − | [[Category:Chromosome 4]]
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