Difference between revisions of "Os06g0184100"

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(Created page with "{{JaponicaGene| GeneName = Os06g0184100| Description = Conserved hypothetical protein| Version = NM_001063525.1 GI:115466781 GeneID:4340325| Length = 1602 bp| Definition ...")
 
 
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{{JaponicaGene|
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The rice gene Os06g0184100 was reported as '''''DPL2''''' in 2010<ref name="ref1" /> by researchers from Japan.
GeneName = Os06g0184100|
 
Description = Conserved hypothetical protein|
 
Version = NM_001063525.1 GI:115466781 GeneID:4340325|
 
Length = 1602 bp|
 
Definition = Oryza sativa Japonica Group Os06g0184100, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Gene Symbol===
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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*'''''Os06g0184100 <=> DPL2, OsDPL2
            clade; Ehrhartoideae; Oryzeae; Oryza.
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|
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===Function===
Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
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* The researchers detected only one reproducible interaction, and identified paralogous hybrid incompatibility genes, '''''DOPPELGANGER1 (DPL1)''''' and '''''DOPPELGANGER2 (DPL2)''''', by positional cloning. Independent disruptions of '''''DPL1''''' and '''''DPL2''''' occurred in indica and japonica, respectively.
AP = Chromosome 6:4200251..4201852|
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CDS = 4200326..4200661|
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* '''''DPLs''''' encode highly conserved, plant-specific small proteins (∼10 kDa) and are highly expressed in mature anther.
GCID = <gbrowseImage1>
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name=NC_008399:4200251..4201852
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* '''''DPL2''''' gene defect is specific to japonica cultivars.
source=RiceChromosome06
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===Mutation===
preset=GeneLocation
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* Pollen carrying two defective DPL alleles became nonfunctional and did not germinate, suggesting an essential role for '''''DPLs''''' in pollen germination.
</gbrowseImage1>|
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===Expression ===
GSID = <gbrowseImage2>
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name=NC_008399:4200251..4201852
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===Evolution===
source=RiceChromosome06
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preset=GeneLocation
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You can also add sub-section(s) at will.
</gbrowseImage2>|
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==Labs working on this gene==
CDNA = <cdnaseq>atgggcagtgaggacacaaaagatatgctgaagaatgtggactggaaaacagttggtggtggttcagtgactactgacccaagccaaccagttgttaaaaagcgtctcccaaagaaaattagacaagttcctgaatgctattttctgcctcggcgatatttgccttctgcattggcaatctatggcgctgtgtgtgctgctggagttggcgcagggatgctgcttgaggtttggataaacaaaaagatcaaaggtgcattcttgttttatctggtggcaggaggggccattcaactcacgttcttggaacactgctattttcttgaaagcttatga</cdnaseq>|
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*Plant Genetics Laboratory, Genetic Strains Research Center, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan;
AA = <aaseq>MGSEDTKDMLKNVDWKTVGGGSVTTDPSQPVVKKRLPKKIRQVP                    ECYFLPRRYLPSALAIYGAVCAAGVGAGMLLEVWINKKIKGAFLFYLVAGGAIQLTFL                    EHCYFLESL</aaseq>|
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*Department of Genetics, School of Life Science, Graduate University for Advanced Studies (Sokendai), Mishima, Shizuoka 411-8540, Japan;
DNA = <dnaseqindica>1192..1527#gtctccccgccgccgccgtcgcccagcgccgcgcctccccgccctccgttgccggcgacaagcccccgcagggagcgggctatctggagtccaagctgcagcctcgccctcccgctccgtgcgccgggcagcagcaagcgccgccccaagccctagcctcgccgcctgccaggtgcctgaagccccctcggcccgtgctccccttcctgtctgcttgtcggattcaccgattgtagcccgcaggtagttagctagatcttgcctcattgtgaatttgtcaatttgtgcatgtaagtttaatttgtggtgccggttgtatgtagtctgtagaatcgattctagtgtggtaatactcggtagtttaatgaatagcttggctacttcagcgctgaatctagtgagaataagttgagaaacaaatccgtgcggtaaattgttggaaaaatgtttagccacatgattgagtgcgatgtcttcttcagagttatgtgagcatggtgtaatgaagatttacttgggtggctatgagaaagcttagagttgagtagcagaaagcttagagttgagtagcattgcattcttctatttatgattaagatccatatttgtaccaaagtacttatgttttttttgtttagtttttttggcaaattttgaacttcataattggttttagtcaattctaccaatgtaccgtgttgattattgattgtttgcttagtaccctacagtactattttacaagggaaataacattcaattttgataagggggtctattgatgcacagggaaattactactgtgatgtttctagaggtgcaaatattttacttacaagttacaaccatgctaatagagatgagcttatggttgtcagatgtggtaacctaatcttttgaataatatagtgtttagcttcatgaaatttctttttgcagctgttgattttgaattccataaagctttctttttatttcttgtattggagcatcgtctgtgaaattattagatcgctttcaatgaatttttatttcgtttaattttgttgcaaaccattgatagttttatacatttagccatgtcataagtcagcattgggtgcactccaattcttgatctgccactcactttctcagatagtgtttggagcttagttctgattaacatttatgcacataggcattttcaggatgggcagtgaggacacaaaagatatgctgaagaatgtggactggaaaacagttggtggtggttcagtgactactgacccaagccaaccagttgttaaaaagcgtctcccaaagaaaattagacaagttcctgaatgctattttctgcctcggcgatatttgccttctgcattggcaatctatggcgctgtgtgtgctgctggagttggcgcagggatgctgcttgaggtttggataaacaaaaagatcaaaggtgcattcttgttttatctggtggcaggaggggccattcaactcacgttcttggaacactgctattttcttgaaagcttatgatgttggattatacaattgaaaacattactcttcttttgtcttagataatgttggattgaacaattgtttgttgcc</dnaseqindica>|
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*Transdisciplinary Research Integration Center, Research Organization of Information and Systems, Mishima, Shizuoka 411-8540, Japan
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001063525.1 RefSeq:Os06g0184100]|
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==References==
}}
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<references>
[[Category:Genes]]
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* <ref name="ref1">
[[Category:Japonica mRNA]]
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Mizuta Y, Harushima Y, Kurata N. Rice pollen hybrid incompatibility caused by reciprocal gene loss of duplicated genes[J]. Proceedings of the National Academy of Sciences, 2010, 107(47): 20417-20422.
[[Category:Oryza Sativa Japonica Group]]
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</ref>
[[Category:Japonica Genes]]
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</references>
[[Category:Japonica Chromosome 6]]
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[[Category:Chromosome 6]]
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==Structured Information==
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 6]]

Latest revision as of 14:41, 21 December 2016

The rice gene Os06g0184100 was reported as DPL2 in 2010[1] by researchers from Japan.

Annotated Information

Gene Symbol

  • Os06g0184100 <=> DPL2, OsDPL2

Function

  • The researchers detected only one reproducible interaction, and identified paralogous hybrid incompatibility genes, DOPPELGANGER1 (DPL1) and DOPPELGANGER2 (DPL2), by positional cloning. Independent disruptions of DPL1 and DPL2 occurred in indica and japonica, respectively.
  • DPLs encode highly conserved, plant-specific small proteins (∼10 kDa) and are highly expressed in mature anther.
  • DPL2 gene defect is specific to japonica cultivars.

Mutation

  • Pollen carrying two defective DPL alleles became nonfunctional and did not germinate, suggesting an essential role for DPLs in pollen germination.

Expression

Evolution

You can also add sub-section(s) at will.

Labs working on this gene

  • Plant Genetics Laboratory, Genetic Strains Research Center, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan;
  • Department of Genetics, School of Life Science, Graduate University for Advanced Studies (Sokendai), Mishima, Shizuoka 411-8540, Japan;
  • Transdisciplinary Research Integration Center, Research Organization of Information and Systems, Mishima, Shizuoka 411-8540, Japan

References

  1. Mizuta Y, Harushima Y, Kurata N. Rice pollen hybrid incompatibility caused by reciprocal gene loss of duplicated genes[J]. Proceedings of the National Academy of Sciences, 2010, 107(47): 20417-20422.


Structured Information