|
|
| (5 intermediate revisions by 3 users not shown) |
| Line 1: |
Line 1: |
| − | {{JaponicaGene|
| + | The rice gene Os11g0598500 was reported as '''''Pb1''''' in 2010<ref name="ref1" /> by researchers from Japan. |
| − | GeneName = Os11g0598500|
| |
| − | Description = NB-ARC domain containing protein|
| |
| − | Version = NM_001074748.1 GI:115486144 GeneID:4350851|
| |
| − | Length = 3873 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os11g0598500, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os11g0598500 <=> Pb1, OsPb1 |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | |
| − | |
| + | ===Function=== |
| − | Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
| + | * '''''Panicle blast 1 (Pb1)''''' is a blast-resistance gene derived from the indica cultivar ‘Modan’. '''''Pb1'''''-mediated resistance, which is characterized by durability of resistance and adult/panicle blast resistance, has been introduced into elite varieties for commercial cultivation. |
| − | AP = Chromosome 11:24704987..24708859|
| + | * '''''Panicle blast 1 (Pb1)''''' encoded a coiled-coil–nucleotidebinding- site–leucine-rich repeat (CC–NBS–LRR) protein. The Pb1 protein sequence differed from previously reported R-proteins, particularly in the NBS domain, in which the P-loop was apparently absent and some other motifs were degenerated. |
| − | CDS = 24704987..24708859|
| + | |
| − | GCID = <gbrowseImage1>
| + | ===Expression === |
| − | name=NC_008404:24704987..24708859
| + | * '''''Pb1''''' transcript levels increased during the development of Pb1+ cultivars; this expression pattern accounts for their adult/panicle resistance. |
| − | source=RiceChromosome11
| + | |
| − | preset=GeneLocation
| + | ===Evolution=== |
| − | </gbrowseImage1>|
| + | |
| − | GSID = <gbrowseImage2>
| + | You can also add sub-section(s) at will. |
| − | name=NC_008404:24704987..24708859
| + | ==Labs working on this gene== |
| − | source=RiceChromosome11
| + | *Plant Disease Resistance Research Unit, Division of Plant Sciences, National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan, |
| − | preset=GeneLocation
| + | *Field Crop Division, Aichi Agricultural Research Center, Nagakutecho, Aichi 480-1103, Japan, |
| − | </gbrowseImage2>| | + | *Institute of the Society for Techno-Innovation of Agriculture, Forestry and Fisheries, Ippaizuka, Tsukuba, Ibaraki 305-0854, Japan, |
| − | CDNA = <cdnaseq>atgactgagctcgcttctggcgccgtgagctcactgctggtggtcatccgcaacgaggcggctcttctcggcggtgtccgggacgacgtgcagttcatcaaggaggagatggagagcatgcacagcttcctggggcacctggccaggagcgctccacagggtggcgagcacgatgagcaggtgtgtacatggatgaaacaggtgcggctgctcgcccaggactgcaacaattgcatcgacctctacctgtactctgggaatccagagattcaccgcgccaagggcagactccggcgacacctctggtgggcttactggtacctgcgcaagatggtcgcgcagcaccgcgcggccatccagctatgccagctcaaggaccgggcgcgggacgtcggcgagcgacggatgaggtacggcgtggaggttccagccacgacaaaggctgctgcacctgacgcagaaggtggctatgctgctggagatgatgaagactatgaggatcattctgctcgaagggccgtctatgagccccccgctctggaagactacgtgaacgcaaaactattggagtgggcagaagaaattcctccagacgccattgagacgttgtccatcgccattgtggcaccggatacagataacaaggaagtccttgatcttgcacgcgatactttggttgttccaggcaactactaccatcgcagtatcacggtcaacgtcccggcggtgcacgccgattttttaccgctacgacctaaggagattctctactacatcttacgggagctcgagcccggatcccagaagcacgtcacatatcaaggtgacccttggcaagattactacaatatttactgtggcaaaaaaagggtgcttcataaaatcaaaaggaatatagaaaagatgaatgtttacaagaagcttgagaagatcaagagtgatattaaagatggacaacataagagtgacaagcagctgctgcttcaactacaaaagaagggtgtggatcaggtggatctacatgtactcgttcagctattgctgctccagtctcaacaagaccaagcaaacaacaaagcagtagacatgtataaattaccagagtggaactacgataacatcatgaaaatagcaaggaagcttaagaagcatatggaagcagacgaggagcttaatgagcaaattagtgtagaaaagagaacaactaagcaaggaggaggaggagagaacaaggaggagaaagacaaaggagatggagacagagaagaggggaaggaggagaacgagaaagacaaaggagaagcagacggagaaggagagcaggaggaggagatgaaggacaaggaaaaaggaggagaagagaggaaggaggagccgcaccacgagaagcaggagcacaagaaggaaaaggaagtgaaagaagaagagaggaaggaggagcagaacaaggagaaagaggagagggaagggacagaagaaaaacaagtaggaggaggggagaaaaaagaagaaaaagaagacggtgatgatgatggcgtcatcgacgacaattacgatgaggaggaggaggaggaggaagaagatgacgacccgattcatcttcatgaagctcaatacgtacaaattctactagaagtgttcccaaagatcaccagcagcaaggcccagcagcaggacaaatcagaggccaagcaagctacaaacaccgcaacgactacattggatgaggtacgaatcaaacaaatgatcaatgacgcaaaacgagatatcttaagggagctgcggggaggcaaatctgataagaatgaagcaacaggagaacctgatgttccacctgataagaatcaaccaacaggtgaacatgcaggtgttccggaccaaaatggagaggcttgttttgaagaattagagctgaagatcgaagaaatcaagcaggaacttaaagagcagctgaagatcaaagggatcgtggacaagatcaaacatcacttacagggtgagtgccccctcattatcctaaaagttgatgacatgatggatggatccagatgggaggagttcagaagggctttgagcctattagaatgcagtgccgatgcactgatcttcaccacagagagcaccgaacaggctaaaggatattgctatccaccgcgagaacctatagatcactgttctcatgttggtctctaccatcatacagtgctcgaacttactagcaagcagaagaataaaagcaactatgacccccggatttttcttgacatcttgaaggagtgtgaggggcatgaattctgcatgaggatcttcacccatgctgtgtatgctaaccccaagaagagcactgaagagttaagcaagctgcacagcaccctgcaggattcacaaaaatcatttgacgcaatagctaagaatatgctcatgtactcttacaatgatctgcctaaagaatacaaatcctgcttgttgtacctagctatcttccccaagggacagaagatcaggcggtcaaccttgattggacggtgggttacagaagggttgacattcaaggaagattggcccagttctgtgcgtcaggcaaatcaatgttttgatgccctcatccgtcggtggcttgtttatcctgctgatattggtgccacaggaaagatcaagagctgtgaagtaggtgatctagttcatgggttcattaccacaattgctagaaaacaacacattgtggagacacgcctatcacatcacttggctcgccacttctccattttcaatgatctccgactccgcagttccgatagaattcaaacgttcttccaaagcctctcacaatcatctcgagtatccctactgaaggttctagatctagaaggttgtcagtgctttggtgttaagaatcagaggtacctcaaggacatctgcaacaagatgttactgctcaagtatctgagcctaaagggaacaaatattacccaactgcccagagaaatcaactgcctccgtgagctagaggtattggatatccgagaaaccatggtgccagcaaatgcaacggttaatgtcctgctcttgaagctgaagcgtctacttgctggtcacattgacccaagtctaagaaattttcgcactagcgttcatattcctcacaggatagacaagatggtaaacatagaggtactatctaatgtcaaggcccagcgcagtgatgatttggaagatattggaaagctatggcagctgaggaagctaggtgtggttattaatgctaagaaaagtcacctcgagaagttgcttaaagcaatcagcgacctacatgagtgcatccgttctctgacaatcactattcccacaaccacactcgagggtactccttcaaacccagagttaccagatcatattgactctaaccttccccatcccaagaaacttgagagtctaagcatcagtggagccaggtatctttttccattgttgatcaaaagtgataataacaagcttgccaaggtaactctaagtagcacacaactgaaccaagatgatctggaggtcctcgccaagctacccaagttacagtgtgttaggctccgacacatttcatgcacagagagcatgctcatcttcaagaaagatgatttcaaatgtctcaagtaccttcttattgagggctttaacttgactaatatcacttttgagaatagatcagcctgtgagctcgagaagatggttttatcttccaccagcatagagtctatctctggagttgataggcttccaaaattcaaagagcttgagttgaacaacagccctgtcccgaatgaggtgaaagaagccattgaaaacaataaaaggataaatcttaaatgtaatgaaccatga</cdnaseq>|
| + | *National Agricultural Research Center for Hokkaido Region, National Agriculture and Food Research Organization, Hitsujigaoka, Sapporo, Hokkaido 062-8555, Japan |
| − | AA = <aaseq>MTELASGAVSSLLVVIRNEAALLGGVRDDVQFIKEEMESMHSFL GHLARSAPQGGEHDEQVCTWMKQVRLLAQDCNNCIDLYLYSGNPEIHRAKGRLRRHLW WAYWYLRKMVAQHRAAIQLCQLKDRARDVGERRMRYGVEVPATTKAAAPDAEGGYAAG DDEDYEDHSARRAVYEPPALEDYVNAKLLEWAEEIPPDAIETLSIAIVAPDTDNKEVL DLARDTLVVPGNYYHRSITVNVPAVHADFLPLRPKEILYYILRELEPGSQKHVTYQGD PWQDYYNIYCGKKRVLHKIKRNIEKMNVYKKLEKIKSDIKDGQHKSDKQLLLQLQKKG VDQVDLHVLVQLLLLQSQQDQANNKAVDMYKLPEWNYDNIMKIARKLKKHMEADEELN EQISVEKRTTKQGGGGENKEEKDKGDGDREEGKEENEKDKGEADGEGEQEEEMKDKEK GGEERKEEPHHEKQEHKKEKEVKEEERKEEQNKEKEEREGTEEKQVGGGEKKEEKEDG DDDGVIDDNYDEEEEEEEEDDDPIHLHEAQYVQILLEVFPKITSSKAQQQDKSEAKQA TNTATTTLDEVRIKQMINDAKRDILRELRGGKSDKNEATGEPDVPPDKNQPTGEHAGV PDQNGEACFEELELKIEEIKQELKEQLKIKGIVDKIKHHLQGECPLIILKVDDMMDGS RWEEFRRALSLLECSADALIFTTESTEQAKGYCYPPREPIDHCSHVGLYHHTVLELTS KQKNKSNYDPRIFLDILKECEGHEFCMRIFTHAVYANPKKSTEELSKLHSTLQDSQKS FDAIAKNMLMYSYNDLPKEYKSCLLYLAIFPKGQKIRRSTLIGRWVTEGLTFKEDWPS SVRQANQCFDALIRRWLVYPADIGATGKIKSCEVGDLVHGFITTIARKQHIVETRLSH HLARHFSIFNDLRLRSSDRIQTFFQSLSQSSRVSLLKVLDLEGCQCFGVKNQRYLKDI CNKMLLLKYLSLKGTNITQLPREINCLRELEVLDIRETMVPANATVNVLLLKLKRLLA GHIDPSLRNFRTSVHIPHRIDKMVNIEVLSNVKAQRSDDLEDIGKLWQLRKLGVVINA KKSHLEKLLKAISDLHECIRSLTITIPTTTLEGTPSNPELPDHIDSNLPHPKKLESLS ISGARYLFPLLIKSDNNKLAKVTLSSTQLNQDDLEVLAKLPKLQCVRLRHISCTESML IFKKDDFKCLKYLLIEGFNLTNITFENRSACELEKMVLSSTSIESISGVDRLPKFKEL ELNNSPVPNEVKEAIENNKRINLKCNEP</aaseq>|
| + | ==References== |
| − | DNA = <dnaseqindica>1..3873#atgactgagctcgcttctggcgccgtgagctcactgctggtggtcatccgcaacgaggcggctcttctcggcggtgtccgggacgacgtgcagttcatcaaggaggagatggagagcatgcacagcttcctggggcacctggccaggagcgctccacagggtggcgagcacgatgagcaggtgtgtacatggatgaaacaggtgcggctgctcgcccaggactgcaacaattgcatcgacctctacctgtactctgggaatccagagattcaccgcgccaagggcagactccggcgacacctctggtgggcttactggtacctgcgcaagatggtcgcgcagcaccgcgcggccatccagctatgccagctcaaggaccgggcgcgggacgtcggcgagcgacggatgaggtacggcgtggaggttccagccacgacaaaggctgctgcacctgacgcagaaggtggctatgctgctggagatgatgaagactatgaggatcattctgctcgaagggccgtctatgagccccccgctctggaagactacgtgaacgcaaaactattggagtgggcagaagaaattcctccagacgccattgagacgttgtccatcgccattgtggcaccggatacagataacaaggaagtccttgatcttgcacgcgatactttggttgttccaggcaactactaccatcgcagtatcacggtcaacgtcccggcggtgcacgccgattttttaccgctacgacctaaggagattctctactacatcttacgggagctcgagcccggatcccagaagcacgtcacatatcaaggtgacccttggcaagattactacaatatttactgtggcaaaaaaagggtgcttcataaaatcaaaaggaatatagaaaagatgaatgtttacaagaagcttgagaagatcaagagtgatattaaagatggacaacataagagtgacaagcagctgctgcttcaactacaaaagaagggtgtggatcaggtggatctacatgtactcgttcagctattgctgctccagtctcaacaagaccaagcaaacaacaaagcagtagacatgtataaattaccagagtggaactacgataacatcatgaaaatagcaaggaagcttaagaagcatatggaagcagacgaggagcttaatgagcaaattagtgtagaaaagagaacaactaagcaaggaggaggaggagagaacaaggaggagaaagacaaaggagatggagacagagaagaggggaaggaggagaacgagaaagacaaaggagaagcagacggagaaggagagcaggaggaggagatgaaggacaaggaaaaaggaggagaagagaggaaggaggagccgcaccacgagaagcaggagcacaagaaggaaaaggaagtgaaagaagaagagaggaaggaggagcagaacaaggagaaagaggagagggaagggacagaagaaaaacaagtaggaggaggggagaaaaaagaagaaaaagaagacggtgatgatgatggcgtcatcgacgacaattacgatgaggaggaggaggaggaggaagaagatgacgacccgattcatcttcatgaagctcaatacgtacaaattctactagaagtgttcccaaagatcaccagcagcaaggcccagcagcaggacaaatcagaggccaagcaagctacaaacaccgcaacgactacattggatgaggtacgaatcaaacaaatgatcaatgacgcaaaacgagatatcttaagggagctgcggggaggcaaatctgataagaatgaagcaacaggagaacctgatgttccacctgataagaatcaaccaacaggtgaacatgcaggtgttccggaccaaaatggagaggcttgttttgaagaattagagctgaagatcgaagaaatcaagcaggaacttaaagagcagctgaagatcaaagggatcgtggacaagatcaaacatcacttacagggtgagtgccccctcattatcctaaaagttgatgacatgatggatggatccagatgggaggagttcagaagggctttgagcctattagaatgcagtgccgatgcactgatcttcaccacagagagcaccgaacaggctaaaggatattgctatccaccgcgagaacctatagatcactgttctcatgttggtctctaccatcatacagtgctcgaacttactagcaagcagaagaataaaagcaactatgacccccggatttttcttgacatcttgaaggagtgtgaggggcatgaattctgcatgaggatcttcacccatgctgtgtatgctaaccccaagaagagcactgaagagttaagcaagctgcacagcaccctgcaggattcacaaaaatcatttgacgcaatagctaagaatatgctcatgtactcttacaatgatctgcctaaagaatacaaatcctgcttgttgtacctagctatcttccccaagggacagaagatcaggcggtcaaccttgattggacggtgggttacagaagggttgacattcaaggaagattggcccagttctgtgcgtcaggcaaatcaatgttttgatgccctcatccgtcggtggcttgtttatcctgctgatattggtgccacaggaaagatcaagagctgtgaagtaggtgatctagttcatgggttcattaccacaattgctagaaaacaacacattgtggagacacgcctatcacatcacttggctcgccacttctccattttcaatgatctccgactccgcagttccgatagaattcaaacgttcttccaaagcctctcacaatcatctcgagtatccctactgaaggttctagatctagaaggttgtcagtgctttggtgttaagaatcagaggtacctcaaggacatctgcaacaagatgttactgctcaagtatctgagcctaaagggaacaaatattacccaactgcccagagaaatcaactgcctccgtgagctagaggtattggatatccgagaaaccatggtgccagcaaatgcaacggttaatgtcctgctcttgaagctgaagcgtctacttgctggtcacattgacccaagtctaagaaattttcgcactagcgttcatattcctcacaggatagacaagatggtaaacatagaggtactatctaatgtcaaggcccagcgcagtgatgatttggaagatattggaaagctatggcagctgaggaagctaggtgtggttattaatgctaagaaaagtcacctcgagaagttgcttaaagcaatcagcgacctacatgagtgcatccgttctctgacaatcactattcccacaaccacactcgagggtactccttcaaacccagagttaccagatcatattgactctaaccttccccatcccaagaaacttgagagtctaagcatcagtggagccaggtatctttttccattgttgatcaaaagtgataataacaagcttgccaaggtaactctaagtagcacacaactgaaccaagatgatctggaggtcctcgccaagctacccaagttacagtgtgttaggctccgacacatttcatgcacagagagcatgctcatcttcaagaaagatgatttcaaatgtctcaagtaccttcttattgagggctttaacttgactaatatcacttttgagaatagatcagcctgtgagctcgagaagatggttttatcttccaccagcatagagtctatctctggagttgataggcttccaaaattcaaagagcttgagttgaacaacagccctgtcccgaatgaggtgaaagaagccattgaaaacaataaaaggataaatcttaaatgtaatgaaccatga</dnaseqindica>|
| + | <references> |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001074748.1 RefSeq:Os11g0598500]|
| + | * <ref name="ref1"> |
| − | }}
| + | Hayashi N, Inoue H, Kato T, et al. Durable panicle blast‐resistance gene Pb1 encodes an atypical CC‐NBS‐LRR protein and was generated by acquiring a promoter through local genome duplication[J]. The Plant Journal, 2010, 64(3): 498-510. |
| − | [[Category:Genes]] | + | </ref> |
| − | [[Category:Japonica mRNA]]
| + | </references> |
| − | [[Category:Oryza Sativa Japonica Group]] | + | |
| − | [[Category:Japonica Genes]]
| + | |
| − | [[Category:Japonica Chromosome 11]] | + | ==Structured Information== |
| − | [[Category:Chromosome 11]]
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 11]] |
