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| − | {{JaponicaGene|
| + | The rice '''''Os03g0650000''''' was reported as '''''Shattering1''''' in 2012 <ref name="ref1" /> by researchers from USA. |
| − | GeneName = Os03g0650000|
| |
| − | Description = Similar to Yabby9 protein|
| |
| − | Version = NM_001057318.1 GI:115454364 GeneID:4333584|
| |
| − | Length = 9892 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os03g0650000, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os03g0650000''''' '''''<=>''''' '''''Sh1''''','''''Shattering1''''','''''OsSh1''''' |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | |
| − | |
| + | ===Function=== |
| − | Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
| + | * '''''Sh1''''' which are a kind of genes for seed shattering, were under parallel selection during sorghum, rice and maize domestication. |
| − | AP = Chromosome 3:25957361..25967252|
| + | |
| − | CDS = 25957756..25957830,25961564..25961686,25963054..25963180,25965997..25966045,25966203..25966278<br>,25966841..25966951|
| + | You can also add sub-section(s) at will. |
| − | GCID = <gbrowseImage1>
| + | |
| − | name=NC_008396:25957361..25967252
| + | ==Labs working on this gene== |
| − | source=RiceChromosome03
| + | * Department of Agronomy, Kansas State University, Manhattan, Kansas, USA. |
| − | preset=GeneLocation
| + | * Department of Genetics, University of Wisconsin, Madison, Wisconsin, USA. |
| − | </gbrowseImage1>| | + | * Center for Plant Genomics, Iowa State University, Ames, Iowa, USA. |
| − | GSID = <gbrowseImage2>
| + | * Department of Agronomy, Iowa State University, Ames, Iowa, USA. |
| − | name=NC_008396:25957361..25967252
| + | * US Department of Agriculture–Agricultural Research Service (USDA-ARS), Griffin, Georgia, USA. |
| − | source=RiceChromosome03
| + | * USDA-ARS, Manhattan, Kansas, USA. |
| − | preset=GeneLocation
| + | * Department of Plant Pathology, Kansas State University, Manhattan, Kansas, USA. |
| − | </gbrowseImage2>| | + | * Center for Plant Science Innovation, University of Nebraska, Lincoln, Nebraska, USA. |
| − | CDNA = <cdnaseq>atgtcggcacagatcgtgccggcgccggagcatgtgtgctacgtgcactgcaacttctgcaacacaattttcgcggtcagtgttccaagcaatagcatgctaaacatcgtgaccgtccgttgtggccattgcactagcctgttgtcagtgaacttgcgaggattggtccaagcactcccagcagaagatcatttacaggacaatttgaagatgcacaatatgagcttccgcgaaaactactctgaatatggctcatcttccagatatggccgagtgccaatgatgttctcaaaaaatgacacagagcatatgctgcacgtgcgacctccagagaagaggcagcgggttccttcagcttataacagatttatcaaggaagagatccggaggataaaagcaaacaatcctgacataagccacagagaagccttcagtactgcagcaaagaattgggcgcatttcccgaacatccatttcgggttaggctcccatgagagcagcaagaagctcgatgaggccattggagctcctagtccccaaaaggttcaaaggctgtattga</cdnaseq>|
| + | * Department of Agronomy, Purdue University, West Lafayette, Indiana, USA. |
| − | AA = <aaseq>MSAQIVPAPEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHC TSLLSVNLRGLVQALPAEDHLQDNLKMHNMSFRENYSEYGSSSRYGRVPMMFSKNDTE HMLHVRPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFG LGSHESSKKLDEAIGAPSPQKVQRLY</aaseq>|
| + | |
| − | DNA = <dnaseqindica>396..470#4204..4326#5694..5820#8637..8685#8843..8918#9481..9591#tcccgtttgcaccaccaccaatctctctctctctctaagatctctatctatctaaagatctgagctacaattaattaaaacctgataagaagaagaccctgagctcaatcccttcttattatactatatatatacttctgtatttgtgcacagtgttggtacaggtatctgcagacagccatatctatctttctagctaattggcaatatgcctgaagtccactgctcgtcctaagatttacttctccacccccccccctctcctttgcttcttcttcttcatcatcatcttcttcctcctcctgttaattaagttcttgatttctaagctagcaattgagcacacatcgatcgcgagagacgcagcggcgcccgtctaccgcggggctagaggaatgtcggcacagatcgtgccggcgccggagcatgtgtgctacgtgcactgcaacttctgcaacacaattttcgcggtaatttgtctgaattgttgatccctttctccttctctctctctctctccccttccttgatttccttgcctcctcttttctacatgaagtttcttttcttttttgggggggaactctcgatgaaggtgcagatctacaagggagatcgatgcatatatgagatgattggttgcttggcttttctttagaattgtgtatgatttgggcagttcatttgcgtgatttctttaatttttaatttgtgcgaaaagatgtgtgtcatgctgccaagagattgggtttcgatatatatgttactttttttttacccaattacccttcgttttctttctttaattgtcgacagagttcagatagcttcacctcctttccttttcgactcattaaaactctggtccggttttctctgaaagagagcttgtcgaccctaattttttgatttagtctaccatggagtcatgggcatgattacatatgaatgggaaaaagggcaaaggtcatgatgatcttgagaattgagctgcttctctctctttgcaccattttgtgtcgtttgattatatgggttcatgaattatttgggcgagttgatgaacttcaattaactggtacgtactagagtagctagctctagatcatccttgttttctctctcgactcttaatttccttcagaacctagcgtagctgatgctagatcgatcttacgtacatatgaagtgcagttgattttcttgccggtcgactggtactttatatggctaccatatataagagtatcgtcgtttcaggtgttattactagtaatcgaattgctacaaattaaagagcatgcaataataacccataactttaattagtatatgcaactactgtgtataatgttctcctgcttgcctcttagatcgatcatcttttaaaatccacttgctcatcccctctaagcacaaatacagcatctgaaggactcagaaacggcaacctctcgaagtactgtactgtgttacaagaattaaggtgcaaattgcatcaataattcctgtacgtacgtgttcccgtgctagctgttccactcattcgttcttcccgtgctatatcttggctttcttgatggtttctctttcttttttttcttttctttttggtgcaatgcatggtacgagtttaaggactaagtacaaataactagaaatatgtaattaaaatgaagcagaagcggtaaccataaggcaaaaggattatttacgtccttccgaaaaaaaaattgtggtttgagcttgagctagcttcttctccttcctcctcttcttcttcttttttttttttttgagagagagagagatgcttgagatggcatggccggctagcttcactcaatacatgcaagggaattagatcagtccttatatatagactgtagttatcagtgatgtgttgaactggtctgaatggtgttttaactagctaatccccatgttgaactcatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacactatcaggaattcgtataaacattttctctctctattttttttctgtttcccacttcttcttggatcttgccctgctctgtttggaagtacacgctgctagactagtgatatgatatgatcgattcccctcagtcagtcagtcagtctgatctgcatgggcggcgagagtgctacgagatatctcaaattcgtccacacacaccataataaatcgtctctagtttcgcctacggttctcaatgaattgaagtatatatatatctttatgtatagtgcatatcaattattcttgttgattaattagttagttccgttcgactctcgacatgttaacttcttggcacaattacatgcatacagtctttatataggagtatatatatcttgttgatctgcgctacttgcatgcttcaatatatctttcagacttttagaagagaaattatattccttatctctgaagtctaaatagctactgtagtttgtaagaactttattggaggccatcttttactccatctcaatctctcctactccctccagaaagataatcaaaataagcgcatttgggaacaaatatagctagtgaccattaatgagagtcgggcccaaacaattcaagtattgtaaataccataacagcaaaaagtagaatacaccaaaatgagtctattaccagttccaggaagagcacaccaaatgacagaaactattactcaatcccaaaacaaattaatttttactatagctaattagctatgaacttggaaagtagtgaccgggatatagagagtgtacacgccaacgacaaatgcagagccgtacgtactgacttcctgcatctacatcaccaactgtaatgtcaattgctgaggcgtagtacacatgtctagtgtagatagtacatgtatagctacatatgcatccatgcatgatctttcacaagatcttaccagcatgtctcaactttactactgcaactccaatacttatatatgtatgtcttcttgctctctcctaccgaaagatgaaaaaaaggggattgaatcatcttgtgcattgcatgacccacacttaaatgtactccctccatccaaaaaaaactcaaccaaccctcctaagacaacgaatctggacaaaagatagtccagattcattttttttgacagagggagtacccacacaaacacacatgcaggagaggagatgttgtgcttgagagtgaattggcttctgcatgaagggtcactgtctctagctagcacctttctttcctgcactgttcatgcatgtagctgaaggctttgtgatttcctactactgctactactactctgtggagaggccagacagaggcatgacatgacataccatgcaaatgcatggcttcttcctttaaaaaagtcaccaagagatatgttgtgaggttgtttgcttctgtcacaaccaactactagcagctagcccttttgtgctagatatgtgtggagtgaagtgtgatttgagctaactcccctcatgggagcacacacaatcattctcattcagtcactttgcttaattatttctttcttctttcttatgggagtgagtgcccaaaaagtgagtgaatgtagggaatcaaacaaagtagaggtactgtgctcttcaggtttgggaagaaaaatgggaacggcaagggaccaatgtgtgcaggcattggaaaagggtgcccccaattctgatctgatcagatatatattcagatcagcagagcccctgataaaagtcatggaggaacagttatccacatctaaagctatagctgtgtattaatgtgtatctgcagtctacaccagccttatgaaacatgcatgcatgcatgcatgcctttgagatttgattttttacttctcagattcttttgtacaaatgcaaaaagaaaatgatcctttggaatctagcatttgttacatatttacaatataaagtgctatacttgtttacttttcattctacttgttccagcacatgcatatgtaattgtacacctgctcaaatttacaatgagtggcatatatattatacatattaattacggcttacttgtatttcttccataaaaaaacatgtctagaatatttcttttcttgacagtaaatattcaggacatattatactgattcttggaatcaatctacaggtcagtgttccaagcaatagcatgctaaacatcgtgaccgtccgttgtggccattgcactagcctgttgtcagtgaacttgcgaggattggtccaagcactcccagcagaagatcatttacaggttgacacatcaatacatactactctttcatgcatgaaattatggatacagatacaatgactacattaaatcatattatctctttttaataaaaaaaacacacatatgttgcctatatatatctagaatccaaattaatggcacttttcaatcataaccattgctactgcatgcttagtctgatagagctagaaatcaaagaacaattaatgtatatgtaccggagcattcttcacatacccagctggaaaaaaaatcacatgcagatcgatgtatgttaaactaccctatatatgtcgaagtagtatagtactactagtatatgtagataactactccctccgtttcacaatgtaagtcattctagcatttctcacatttatactgatgttaataaatctagacatatatatctatctagattcattagcatcaatgtaaatgtgagaaatgctagaatgacttacattgtgaaacagatgaagtagattttactcacagagaaaaacggaaaagacaccatgcaatgcatgcatgggtcatctcaagcttgaatactttacatgtacagcagagacaaattaaagcattgcactatttactcacaggaaagaattttaaagctcttgcacatgccaaaatatatactaggagtaccaagccatatggctagatcagctagctagctcaggttgctcagctgatcttatactacatgacttgtgcccctttgtcaaaccctgcagggttattccccgcaaaaaaaaataataacaaatcctgtagggttattgataaatactagtagatgttttgcatttgtttttatatgctactatatataatggaaaaaatcctgccacacaagtactcgaattaaatttccaatatgaaaagcacgaatttcgaattccggcaataactacatgttaggtttgatatactccctccgtcagtaagggtgtgtttagttcacgctaaaattggaagtttgattgaaattgaaaagatgtgacggaaaagatggaagtttgtgtgtgtaggaaagttttgatgtgatggaaaagttgaaagtttgaaaaaaaaagtttggaactaaactcggcctaaatatgagggatacgttactatagaatgtacaaaattgattcgccaaattcatgtttagagattttcatgtttgcttcacaaaacaatcaaaagccatacagatttttcgaaatgatctgaacagtaaccaccaatgttttacttaattttcttgtcttgacttggttataatttccatgtaaatacacactaagtagcatctagaggaaaaatgtgtgactttaagttgattaacttgcttcttacattttcctcaggacaatttgaagatgcacaatatgagcttccgcgaaaactactctgaatatggctcatcttccagatatggccgagtgccaatgatgttctcaaaaaatgacacagagcatatgctgcacgtgcgacgtaagacaatgcatatgaacctgcataataaatttagtgtacatgtgcgacggagccatatttctagagattattgattttactatatgaagcaatataaaggtatacaaatgctaggggaatattgcatatattcacatatacatgctgggtgcatataccacttttcttctccaaaccctttttatctttgttgttttgctcagacaactggggtacgtgtgttacttcttaattaacacaaatacatgtatagagaaattatactggcttaatcaattcctgagttatgcacctttttttaaacagatatatttagaaaattcgacgagggataaagctctactaaaaagtcagaaaaatagaaaatttaaacaagttgcattgattcagctagaggtggataataaactagctaggctcacaagctggcttgttaagctcgagttttatatcaatttaacatgtattaatctattatatgttcacataatagtaaacactactccctctgtttcatattaaagtcgtttcatattataagttattttgattttataaaaaaagtcgttttgattgttttcctagctagtcaaagtaatttaagtatgaccaagtttacagaaatatatagtaacatttctaatacagaacaaacatattaaaacatattcaatgctagatttaatataactaatttggtgttttaagtgttgcaaaaggtttctataaatttaatcaaaactttaaaaaattttgactagaaaaagtcaaaatgacttattacgtgaaacggaggaagagtaactagtaaagtactaactagacatgaaaagtttgaaagtaatttcaagaagtattatccatagtataagtattgactaataggcactcggtatatatggaaaatatggtgtgtctagttaagctaacaagctaaaaatccatctcacgagttcgagtcgatcagccaagccacaagctttgagtttttttccccaaccctagctaggcttaggccctctttgtttaggcttataagctaacttataagtcgaaaagtctaagcctaaacaaacaaacagcttttctgtttggcttttttgaagccataagccactctaacactattaagccaaaagctaggttggagaagcttttttgtcttatgtgagatagatgtatgactcaactactaaacttaggacattaaatccaccggcttataaatcatataagccaataagctgacttaaaagtctaggccaataagcttaagcctaaacaaaaaggcgcgtctgctgttattgatcaggttgagttctgttaaagtttatggtccccatcgcttggcttatttcctaataagccaaaacggcttattaggaaataaaaatgaatttttaggtaaaacttttataattgtgtttttggtgacttaaaagccaatgttgaaaaagaaactacgttgaaaatatctcaaaatcaatctcaaaattaagcttgaaaattcaaattttggctttttctttagctgattaggccatccgataggagccatccgataggagcctatactgggctgtatatagaaattattcttatatgaattaatgaatgaaacgagatgtgcatgtgtgcgtgagttctagctagtagctagtaccatgcatggttcggttaaagatttttccgtgcggtcaaaatgcatttttcagtgcggaggtcccgcccgactgtaccctgcatgtctgcgaaaatccatattttcacgtgcgggcggcctaaccgcatgagataatccatcttcccgtgcggtcgggttaagtagaccacacgggataatcgattatcccgtgcggtcaaattataccgcccgcacgcaaaaaaaactgaaaaaaaaaataaaataaaaaacactaaccctaaccctagaaatctagaatcgcccgctgccgccgctcgtgttcgccatcgtcctcatgtcgtcgtcgtggtcgcaccgtcgccgctctcatcgtcgtcgttgtggtcgcgctgccgccgctcctggccgccgtcactgctcccggttgccagcacggcgcggatccgaccggtcacccaccgcgctgtctccgccagcagccgtcgtgccgcccgctcccggccgccgcctcgttggcggcaagccgggcaactcccgcgccccgtgcgctcggtggggaggggaggagctagaggaaaggcagagagagagaggagtgattgagggtgaataaaagggaaaatgaatagagaagatgaaaaatttaaagtgagtaagagagaaaagagggagaggtatttttgcgtgcggtccacttaagaggcccgcacgtgaaaatcggttttcgcgtgcgggcctcttaagggtcaacacgcaaaaataggcttatttttgcgtgcggaccgttaagaggcctgtctgcgaaaatcgatttttgcgtgcgggtctcttaagagtccgcacgcgaaaatgggaggccaatttctgcagacgcgcgcgaaaacggtccgtctgggaaaatggaagctccttgtccagaaaaatgttttgtgtacttgtatatatttgaaaatactgatgcatgaactagctacttgagtactatttcattttgtgagcccaaaaatattgacgtacgaactacttgactactacgtactcctattaatttcttgaaaaacctaggagtagtatacatactctcaagagtatgtgctttagatagtaattaaacagtatctggatgcttatactttttttttacaaatctttttcatacaacttgcagctccagagaagaggcagcgggttccttcagcttataacagatttatcaagtgagtttgatctcgagacaattcgatcgatccatatatatatatagatcgtctagacagcttataacatctgagagttttcagataattgatataaatctgccgtattctatactaagtgtgtttgattttgacacccactaatatatcactacagggaagagatccggaggataaaagcaaacaatcctgacataagccacagagaagccttcagtactgcagcaaagaatgttagtacatgtgtagctaggggaaacaaattactatcttaattacttttacatatactgatataatagctgttcttttttttactacaaactataatgcaaattctcacacactttggcctggtttagtttccaactttttcttcaaacttccaacttttccatcacatcgttccaattttaactaaacttctaattttagcgtgaactaaacacacccttgatcattgctgaatatatattgatagaagtatgtgagccatatacatagagttacatatcatcaatactacatattgttgactttgtatgtcactgctagcaagatattaaatccatggcaattgccatttgcttaatactcttatacatatagtaatgtccatattgatcactgaatactcagtctatatgaatttaatttatataacatattcgtaaaaaaaaatagtggtcaaagttatatatttaagaccatgtcatcgtctaaaccatcatctacttctgactagagggagtaactctcatctcatatgcatcctacttttttttttttttgcagtgggcgcatttcccgaacatccatttcgggttaggctcccatgagagcagcaagaagctcgatgaggccattggagctcctagtccccaaaaggttcaaaggctgtattgatcgagtacacatgatgatcgatggatcctacgtgcttgttgatctcatgttgtaagtaacttaattaagaaaaaaagtctacgcttatttatttcttaagtatcatcagttaaatttgtgagcgagtatatagatgagttgtcatgatcagtgagtgatcgtatgcatgcagtgctgagaattaaaggtgtatatgcatgagtaacgttacatgcagctagtgtcgacgcacgtatgacagactgaataaactcttcaccatgttgtttttttatgtttgaaatgaattaattaattgtcc</dnaseqindica>|
| + | ==References== |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001057318.1 RefSeq:Os03g0650000]|
| + | <references> |
| − | }}
| + | * <ref name="ref1"> |
| − | [[Category:Genes]] | + | Lin, Zhongwei, et al. "Parallel domestication of the Shattering1 genes in cereals." Nature genetics 44.6 (2012): 720-724. |
| − | [[Category:Japonica mRNA]]
| + | </ref> |
| − | [[Category:Oryza Sativa Japonica Group]] | + | </references> |
| − | [[Category:Japonica Genes]] | + | |
| − | [[Category:Japonica Chromosome 3]]
| + | |
| − | [[Category:Chromosome 3]]
| + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]] |
