Difference between revisions of "Os02g0477700"
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| − | + | The rice '''''Os02g0477700''''' was reported as '''''DWARF50''''' in 2012 <ref name="ref1" /> by researchers from Japan. | |
==Annotated Information== | ==Annotated Information== | ||
| + | ===Gene Symbol=== | ||
| + | *'''''Os02g0477700''''' '''''<=>''''' '''''DWARF50''''','''''D50''''' | ||
===Function=== | ===Function=== | ||
| − | + | [[File:Figure1.JPG|right|thumb|527px|'''Figure 1.''' ''Phenotypes of rice d50 mutant, F71, in matured internodes.<ref name="ref1" />.'']] | |
| − | + | * '''''D50''''' encodes putative inositol polyphosphate 5-phosphatase (5PTase), which may be involved in phosphoinositide signalling required for many essential cellular functions, such as cytoskeleton organization, endocytosis and vesicular trafficking in eukaryotes. | |
| − | + | * The putative 5PTase, encoded by '''''D50''''', is essential for IM formation, including the direction of cell division, deposition of cell wall pectins and control of actin organization. | |
| − | === | + | ===Phenotypic analysis=== |
| − | + | * The d50 mutation induced abnormally oriented cell division, irregular deposition of cell wall pectins and thick actin bundles in the parenchyma cells of the IM, resulting in abnormally organized cell files of the internode parenchyma and dwarf phenotype. | |
| − | + | * Dwarfing of F71 mutant plants typically appears at the reproductive growth stage (Fig. 1a). In order to understand the cell morphology of the dwarf phenotype of F71, the researchers observed matured tissue in the third internodes. Longitudinal sections showed that all wild-type parenchyma cells were fully elongated and arranged in fine cell files along with the internode elongation axis (Fig. 1b), while most F71 parenchyma cells had irregular shapes and sizes, consequently exhibiting abnormally organized cell files (Fig. 1c). | |
| − | + | * Cross-sections showed that F71 had normal vascular bundles and cortical fibres similar to wild type, but their parenchyma cells were unequal in size (Fig. 1d, e) and had thickened cell walls (Fig. 1d, e; insets). | |
| + | * These abnormal parenchyma cells in F71 were strongly stained by the Mäule reaction (Fig. 1f, g), which detects guaiacyl and syringyl groups of the cell wall phenolic components. | ||
==Labs working on this gene== | ==Labs working on this gene== | ||
| − | + | * Graduate School of Bio-Applications and Systems Engineering, Tokyo University of Agriculture and Technology, 2-24-16 | |
| + | Naka-cho, Koganei, Tokyo 184-8588, Japan, | ||
| + | * Graduate School of Agriculture, Tokyo University of Agriculture and Technology, Fuchu, Tokyo 183-8509, Japan, | ||
| + | * Kyushu Okinawa Agricultural Research Center, 496 Izumi, Chikugo, Fukuoka 833-0041, Japan | ||
| + | * Bioscience and Biotechnology Center, Nagoya University, Nagoya 464-8601 and 5 College of Bioresource Sciences, Nihon University, 1866 Kameino, Fujisawa, Kanagawa 252-0880, Japan | ||
==References== | ==References== | ||
| − | + | <references> | |
| + | * <ref name="ref1"> | ||
| + | Sato-Izawa K, Nakaba S, Tamura K, Yamagishi Y, Nakano Y, Nishikubo N, Kawai S, | ||
| + | Kajita S, Ashikari M, Funada R, Katayama Y, Kitano H. DWARF50 (D50), a rice | ||
| + | (Oryza sativa L.) gene encoding inositol polyphosphate 5-phosphatase, is required | ||
| + | for proper development of intercalary meristem. Plant Cell Environ. 2012 | ||
| + | Nov;35(11):2031-44. doi: 10.1111/j.1365-3040.2012.02534.x. PubMed PMID: 22574770. | ||
| + | </ref> | ||
| + | </references> | ||
==Structured Information== | ==Structured Information== | ||
| − | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]] | |
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| − | [[Category:Genes]] | ||
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| − | [[Category:Oryza Sativa Japonica Group]] | ||
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Latest revision as of 02:28, 14 February 2017
The rice Os02g0477700 was reported as DWARF50 in 2012 [1] by researchers from Japan.
Contents
Annotated Information
Gene Symbol
- Os02g0477700 <=> DWARF50,D50
Function
Figure 1. Phenotypes of rice d50 mutant, F71, in matured internodes.[1].
- D50 encodes putative inositol polyphosphate 5-phosphatase (5PTase), which may be involved in phosphoinositide signalling required for many essential cellular functions, such as cytoskeleton organization, endocytosis and vesicular trafficking in eukaryotes.
- The putative 5PTase, encoded by D50, is essential for IM formation, including the direction of cell division, deposition of cell wall pectins and control of actin organization.
Phenotypic analysis
- The d50 mutation induced abnormally oriented cell division, irregular deposition of cell wall pectins and thick actin bundles in the parenchyma cells of the IM, resulting in abnormally organized cell files of the internode parenchyma and dwarf phenotype.
- Dwarfing of F71 mutant plants typically appears at the reproductive growth stage (Fig. 1a). In order to understand the cell morphology of the dwarf phenotype of F71, the researchers observed matured tissue in the third internodes. Longitudinal sections showed that all wild-type parenchyma cells were fully elongated and arranged in fine cell files along with the internode elongation axis (Fig. 1b), while most F71 parenchyma cells had irregular shapes and sizes, consequently exhibiting abnormally organized cell files (Fig. 1c).
- Cross-sections showed that F71 had normal vascular bundles and cortical fibres similar to wild type, but their parenchyma cells were unequal in size (Fig. 1d, e) and had thickened cell walls (Fig. 1d, e; insets).
- These abnormal parenchyma cells in F71 were strongly stained by the Mäule reaction (Fig. 1f, g), which detects guaiacyl and syringyl groups of the cell wall phenolic components.
Labs working on this gene
- Graduate School of Bio-Applications and Systems Engineering, Tokyo University of Agriculture and Technology, 2-24-16
Naka-cho, Koganei, Tokyo 184-8588, Japan,
- Graduate School of Agriculture, Tokyo University of Agriculture and Technology, Fuchu, Tokyo 183-8509, Japan,
- Kyushu Okinawa Agricultural Research Center, 496 Izumi, Chikugo, Fukuoka 833-0041, Japan
- Bioscience and Biotechnology Center, Nagoya University, Nagoya 464-8601 and 5 College of Bioresource Sciences, Nihon University, 1866 Kameino, Fujisawa, Kanagawa 252-0880, Japan
References
- ↑ 1.0 1.1 Sato-Izawa K, Nakaba S, Tamura K, Yamagishi Y, Nakano Y, Nishikubo N, Kawai S, Kajita S, Ashikari M, Funada R, Katayama Y, Kitano H. DWARF50 (D50), a rice (Oryza sativa L.) gene encoding inositol polyphosphate 5-phosphatase, is required for proper development of intercalary meristem. Plant Cell Environ. 2012 Nov;35(11):2031-44. doi: 10.1111/j.1365-3040.2012.02534.x. PubMed PMID: 22574770.
