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| − | {{JaponicaGene|
| + | The rice '''''Os02g0575500''''' was reported as '''''OsABC1-2''''' in 2012 <ref name="ref1" /> by researchers from China. |
| − | GeneName = Os02g0575500|
| |
| − | Description = Similar to ABC transporter-like|
| |
| − | Version = NM_001053747.1 GI:115446864 GeneID:4329751|
| |
| − | Length = 7569 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os02g0575500, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | [[File:219-Os02g0575500-1.png|right|thumb|227px|'''Figure 1.''' ''(D) Growth phenotype of OsABC1-2 Mutant .<ref name="ref1" />.'']] |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | ===Gene Symbol=== |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | *'''''Os02g0575500''''' '''<=>''' '''''OsABC1-2,OsAbc1-2''''' |
| − | |
| + | |
| − | Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
| + | ===Function=== |
| − | AP = Chromosome 2:22935350..22942918|
| + | * The rice '''''OsABC1-2''''' play potential roles in regulating dark-induced senescence of plants. |
| − | CDS = 22935428..22935913,22936976..22937111,22937627..22937793,22937915..22938035,22938128..22938228<br>,22938376..22938474,22938980..22939090,22939177..22939256,22939348..22939417<br>,22940360..22940433,22940565..22940634,22940718..22940806,22940916..22941040<br>,22941154..22941234,22941316..22941376,22941470..22941522,22941641..22941741<br>,22941859..22941948,22942385..22942444,22942540..22942656|
| + | ===Phenotypic analysis=== |
| − | GCID = <gbrowseImage1>
| + | [[File:219-Os02g0575500-2.png|right|thumb|227px|'''Figure 1.''' ''(E) Seed size of osabc1-2 mutants. Scale bar = 5 mm.<ref name="ref1" />.'']] |
| − | name=NC_008395:22935350..22942918
| + | |
| − | source=RiceChromosome02
| + | * The researchers found a rice (Oryza sativa) T-DNA insertion mutant impaired in an Abc1 kinase family gene with a dwarf and pale-green phenotype. |
| − | preset=GeneLocation
| + | * The mutant showed reduced pigment content and photosynthetic efficiency and increased superoxide dismutase activity in leaves. |
| − | </gbrowseImage1>| | + | |
| − | GSID = <gbrowseImage2>
| + | ===Expression=== |
| − | name=NC_008395:22935350..22942918
| + | * The mutated gene OsABC1-2, is expressed primarily in green tissues and/or organs. |
| − | source=RiceChromosome02
| + | |
| − | preset=GeneLocation
| + | ===Subcellular localization=== |
| − | </gbrowseImage2>|
| + | * The rice '''''OsABC1-2''''' encodes a protein, which is localized in chloroplast envelope. |
| − | CDNA = <cdnaseq>atgtcggccgcggccggggcggccaccctcgtcgcctcctccgcctcgctctccgtgcccgaccacctccgcctccgccgcttccgcctccacctccacccgcgcccgccgccgccgcatccccagctccggtcccgctccctccggcagcgccgccgcttcgtgctcgccgtgctgcaggaggaccggtccccctccgcgccggatgaggaggcgaggaggtacgggctcaacgggagcgccccgagcagcggggtcgggtacgacgatgccgccgtggaggcctacctcgggaccaacggcaacgggagggggaacggtgcggcggcggtggtgaagcccgccgcggagtcacggagcagcgccgccttggtgtccgcggggcctgggccgggggatgatgagaggaggaggaaggagcgggtggaggagatcggcagggaggacgcctggttcaagcagagcggcggggattccaagcccgaggtgtctgtcgctcctggaggtcgctggaatcggtttaaaacctattcgacgattcaaaggacgttggaaatatggggctttgtttttaaatttatattcagatcttggctcaataatcagaagttcacttatcgaggagggatgacggaggagaaaagggtaatgaggaggaaagttcttgccaagtggcttaaggagagtattttgagactaggtcccacatttatcaaaattgggcagcagttctccaccagagtggacattcttccacaggaatatgtcgaccagttatctgaattacaggaccaagttcctccatttccttcagagacagcggtgtcaattattgaggaagagctaggggcatctgtgaataagatttttgatcgatttgactttgaaccaatagctgctgctagcctcggccaggttcatcgggcatgcttgaatggcaaagaagttgtcatcaaagtgcaaaggcctggtctgaaggagctatttgatattgatctgaaaaacttaagggtaatagcagaataccttcagaaagtggaccctaagtcagatggtgccaagagagactgggttgctatctatgatgagtgcgcatctgttttgtatcaggaaatagactatacaaaggaagcatttaatgctgaaaaattttctgaaaacttcaaaaatatggattatgtgaaggttccagagattttgtgggagtatactacacctcaggtcttaacaatggaatacgtcccaggaatcaagataaataggataaagcagctagataagttaggagttgatcggaaaaggttaggtcggtatgctgttgagtcgtacctggagcagatcttatctcatggatttttccatgcagatccgcatccaggaaatattgctgttgatgatgtcaacggtgggaggcttatcttctacgactttggaatgatgggaagcattagtccaaatatccgggaagggttgctcgaagcattctatggagtttatgaaaaagatcctgataaagtgcttcaatcaatgattcaaatgggtgtccttgttcctactggagatatgacggctgtcagaagaacagctcaatttttccttgatagcttcgaagagcgtttagcagcacaaaggaaagaaagagagatggcgactgaggaacttggatttaagaagcaattaactaaggaggagaagtttgaaaagaagaagcaaaggcttgctgctatcggagaggatcttttgtcaattgctgctgatcaaccatttcgatttcctgccacctttacttttgtggtcagagcattctcagtactagatggtatcgggaagggccttgatcctagatttgatatcacagagattgctaaaccatatgctatggagttgcttagatttaatgaagctggagttgaagttattgtaaaggatgcgaggaagagatgggaaaggcagtcccgtgcattctacaatttatttcgccagcccgacagagttgaaaagcttgcgcaaatcattgagcgtttggagcaaggtgatctcaagcttcgtgtcagaacattggagtcagaaagagcattccaaagagttgcagctgtacagaaaacaattggatatggagttgccgcaggtagtttggtaaacctcgccaccgttctctacctcaattcaatccggttgccagcgaccatagcatactctctctgcgcgttcttcggcctacaagtccttgtcggccttttgaaggtcaagaagttggatcaacaggagagactgataaccggcactgcttga</cdnaseq>|
| + | |
| − | AA = <aaseq>MSAAAGAATLVASSASLSVPDHLRLRRFRLHLHPRPPPPHPQLR SRSLRQRRRFVLAVLQEDRSPSAPDEEARRYGLNGSAPSSGVGYDDAAVEAYLGTNGN GRGNGAAAVVKPAAESRSSAALVSAGPGPGDDERRRKERVEEIGREDAWFKQSGGDSK PEVSVAPGGRWNRFKTYSTIQRTLEIWGFVFKFIFRSWLNNQKFTYRGGMTEEKRVMR RKVLAKWLKESILRLGPTFIKIGQQFSTRVDILPQEYVDQLSELQDQVPPFPSETAVS IIEEELGASVNKIFDRFDFEPIAAASLGQVHRACLNGKEVVIKVQRPGLKELFDIDLK NLRVIAEYLQKVDPKSDGAKRDWVAIYDECASVLYQEIDYTKEAFNAEKFSENFKNMD YVKVPEILWEYTTPQVLTMEYVPGIKINRIKQLDKLGVDRKRLGRYAVESYLEQILSH GFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGVYEKDPDKVLQ SMIQMGVLVPTGDMTAVRRTAQFFLDSFEERLAAQRKEREMATEELGFKKQLTKEEKF EKKKQRLAAIGEDLLSIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKP YAMELLRFNEAGVEVIVKDARKRWERQSRAFYNLFRQPDRVEKLAQIIERLEQGDLKL RVRTLESERAFQRVAAVQKTIGYGVAAGSLVNLATVLYLNSIRLPATIAYSLCAFFGL QVLVGLLKVKKLDQQERLITGTA</aaseq>|
| + | You can also add sub-section(s) at will. |
| − | DNA = <dnaseqindica>79..564#1627..1762#2278..2444#2566..2686#2779..2879#3027..3125#3631..3741#3828..3907#3999..4068#5011..5084#5216..5285#5369..5457#5567..5691#5805..5885#5967..6027#6121..6173#6292..6392#6510..6599#7036..7095#7191..7307#agtctcgcttctcgccgccgccgccgcgcacacgcggcgcgcccaaaccctagtccctccctcgccgccgccctcgcgatgtcggccgcggccggggcggccaccctcgtcgcctcctccgcctcgctctccgtgcccgaccacctccgcctccgccgcttccgcctccacctccacccgcgcccgccgccgccgcatccccagctccggtcccgctccctccggcagcgccgccgcttcgtgctcgccgtgctgcaggaggaccggtccccctccgcgccggatgaggaggcgaggaggtacgggctcaacgggagcgccccgagcagcggggtcgggtacgacgatgccgccgtggaggcctacctcgggaccaacggcaacgggagggggaacggtgcggcggcggtggtgaagcccgccgcggagtcacggagcagcgccgccttggtgtccgcggggcctgggccgggggatgatgagaggaggaggaaggagcgggtggaggagatcggcagggaggacgcctggttcaagcagagcggcggggattccaagcccgaggtgaactattcttattgttttcttgccttttagctttgcagctacatgtgttggccagctccagttccaagctagtgttcgatcagagggctgtgccgtgtttgagatatgcaaatgtttagctgctcctgatcgaataagaggagggagtatgatcacgcattcgtgccatttttagcacaaggcaaatgtgaagtacctactaaaattagctggagttggatgttgccttgactaaagcaagagttcagattgactttagtcgtttgtttgtggttttgttcaagtttggatgtagttaaatgtagctgtagcctgtagggacgagcaaggcaggcaatgccttatatttcttcaggaaacaaaaaacattgagcagcgtggcagagttgatgtttagtaggagaaaaggtaaagggtgtttgcgacttggtagtgtattgtgccatattgaaaagattttggaacttgtttgcttttggcttttgagactttcgttgcagtttttcccccagttatcccccattgtttgtgttagtattggtactttttcatcttctgacagaaatacaactgttcatttcaatcagatgaagcaaataacagttactttggtgggagtggattttggtccctcgaggagatgtcctctcgttgtttgcatgtcactcaaatagttatggaaaaaattgagaagatgtattaacatatgatatatcactctacaaacatacaagtttaaattcatcttctatatctcgcaacgaaaaaaacaaatttgactgcgaatgtaggttaacttgctgtagtttaatttattttttcgttgcgagatgtagaagttgaatttgaactttcatgtttgtggagtgatatatcacatgttaatatatcttctcaaattttttcataaccatttgagtggcataaacaacgagaggacatcccctcgagggatcaaaatagtttccctactttggtcgcctttttttagcaaataaaagttactctgcgtcattattattgcttttccttttggcgttgaacatctaaatcgtgcaggtgtctgtcgctcctggaggtcgctggaatcggtttaaaacctattcgacgattcaaaggacgttggaaatatggggctttgtttttaaatttatattcagatcttggctcaataatcagaagttcacttatcgaggtcagtgacttgtcaaaacaacaaaaatgaactcctatagtatggttatatataaccaaactgaggttcctgatttctatgttagtataatatgtgctcggggaagaaattaaagagatgaaggtttataatgtttttgttcctcatgaaaaagaaaagagagaatgtatttatgtacttgtggaaaagaacaggcgactcaatgttttcatggtgcagtgtaatcgcatttactttagttactatgatcatagcataagacattttgagaaaattcacagacataatgtagtttagtaaaattcatcaacccataaatcagtgtatgttgcatattagtcaatgcaccgaacatgtatttttcacccaatgatgttcagtgaagtcctgaattcttctatatgtgcagtgtaaaattgtgtgcacggtacattactctgatctcatggaattattacctacatgtttatgacaatattgtgtatcttcattaacatttagaataatttcttcaggagggatgacggaggagaaaagggtaatgaggaggaaagttcttgccaagtggcttaaggagagtattttgagactaggtcccacatttatcaaaattgggcagcagttctccaccagagtggacattcttccacaggaatatgtcgaccagttatctgaattacaggtctgtatgttgaaccttgtagatgtgcttagacaatttcttgatagagacctgcctctcaacagatctatgtttatactctttttctggtggaatactggaaccgttttctcttctgcaggaccaagttcctccatttccttcagagacagcggtgtcaattattgaggaagagctaggggcatctgtgaataagatttttgatcgatttgactttgaaccaatagctgctgctagcctcggtaataagctaacatgatataatgagtatttaactaaaactagaacatttttcgtaagcgacttgatactacaatatatccatttttggcaggccaggttcatcgggcatgcttgaatggcaaagaagttgtcatcaaagtgcaaaggcctggtctgaaggagctatttgatattgatctgaaaaacttaagggtatgtaatttaaatgcgtgcatatttctccaactttgtaacactctattgctgttaattacatgcaaaactggggatactattattcttaattaaaatatgattatttcaataccatttgttgatgagtcaactgttctgttctaggtaatagcagaataccttcagaaagtggaccctaagtcagatggtgccaagagagactgggttgctatctatgatgagtgcgcatctgttttgtatcaggtactaatcatatgtactaggatttttttattaatctataggttgtttatatcctagacctttaacctcctagatagttaatctcctatgacctttggtcttgtgtaactcactagctttgattgtaactcaactatttatatgagagatcacctccccgcttggactgaggcatctattccactttctctacaatatgattctctttttagcaaattatgaattattcaaaaaccaaaaaaaaagtgtattgctaatccgctgccattggcaatatattagtgtgaggctcaggcatgaacttagaatatggatttcttgaatttggcattattttgtacggcaatgcattttatcatgctctctcttactctgagttattcacatcgtcatatatgtcagattatgttagataaattcttgtaagtcagccatttgacctttggtatttctgctggtaaagaagtcatatgttctaatcagcccatggaattgtggttttcaggaaatagactatacaaaggaagcatttaatgctgaaaaattttctgaaaacttcaaaaatatggattatgtgaaggttccagagattttgtgggagtatactacacctcaggttcctactatccagagacttgtaaaatagaatatcgagtagcatagaatagaatataacactatatatttctgtcctctatgcaggtcttaacaatggaatacgtcccaggaatcaagataaataggataaagcagctagataagttaggagttgatcggaaaaggtatgtgtgctgtatgctggtgagccatagcttcagtttgctttaccaattgacattggttgcttattatccctccttgaacccctctcaggttaggtcggtatgctgttgagtcgtacctggagcagatcttatctcatggatttttccatgcagatccggtcagttgtactgtatatttttcaaaagcaatgctgtagttgtttgtcctgttatggttatttcttacttttacattattctattcttgcactagactgtgcaaatgaatcatgaagatgattctgcactgagagaagctatatcatcttttgacgtagggagaaactactctctccggtcgtaaatatttggcgtttaagacaagatctggtcaaactcaaattttcgagtagcaatattttattcgatgtttagttttaaaaaatagaaatggtaatacatagacttaccttgaagagtactatataatatgattaagttgttggattttataaactcatgctaatacgaaattgatggtcggaattttaaaagtttgaccaaatagtcctaaacgtcaaatatttatgaatagagttagttcggtgtatatcattgtagttctgagatctatccctgctactgggccttttgcaaggtggtatatgcttaatttgttaaaagttgtgtaaccctgtaagtctgtaacctcagctgtacatgcttcagctacatgcgcatgaactataggcttagagatttgttccggtccaataaaaagtacctcgaggtaccggtacctcacagtactaaatcgtttacaatcgttggatctaacaattcccatcctgcccagctagatccaactatcggaaacaattcggtaccgtgaggtaccggtatctcgaggtactttttgttggaccggagcaaatctcataggcttaatgagcaatatgctattgcctccggcattacaaatttcatggcacataatcattcttttgtccttttcctcctttttaatttctcaattcaatgcagctgtgatgctccttttaagaagctacctttttaaaaataaacaacttttaaaaaatctaatatagatttctttacagcatccaggaaatattgctgttgatgatgtcaacggtgggaggcttatcttctacgactttggaatgatgggaaggttacatctgatatctttgtttgtttccataaacttccattcagttaaaagttgtgcaatagtatgtttttccttgagtagttacagggttgcagaacgtttaatctgaccttcactcttcttactttcagcattagtccaaatatccgggaagggttgctcgaagcattctatggagtttatgaaaaagatcctgataaagtatgtttgtctgggcatgaccttcaaaagtataacttaaataccttaagttctgcaaaacatccaataataaattcctgcaggtgcttcaatcaatgattcaaatgggtgtccttgttcctactggagatatgacggctgtcagaagaacagctcaatttttccttgataggtaataattttgttctgagaggatattcttcgtaattacctatatacctcgagtttcttgagtgaggtgaactactgtaacacttggcttcactttgttgtgtgtatagcttcgaagagcgtttagcagcacaaaggaaagaaagagagatggcgactgaggaacttggatttaagaagcaattaactaaggaggagaagtttgaaaagaagaagcaaaggcttgctgctatcggtaatgagtcaatagattctgcagcctattagagaacatgataaaagtaaatgtgtcaaggtgtatgtatttcgaccggttgctttctgtttacttgaaacaaaattttgcaggagaggatcttttgtcaattgctgctgatcaaccatttcgatttcctgccacctttacttttgtggtcagagcattctcaggtatgatatgcaataatttgtgtacaagaaacgtggttgtgacataatgccatggttcctcattctccattctgtgtgcagtactagatggtatcgggaagggccttgatcctagatttgatatcacagagattgctaaaccgtgagtatttttctccttcaagaattttgttttcttatttaagtttcaagttgcaatttgggttctgacttgatacatccaatgaattgctagatatgctatggagttgcttagatttaatgaagctggagttgaagttattgtaaaggcaagttttcatctttggtccatagatttaataccttatttgatggcacatcttctaatatgactatgcatgttcagacttgagagttttaagcgctcttggttttattttacctcaggatgcgaggaagagatgggaaaggcagtcccgtgcattctacaatttatttcgccagcccgacagagttgaaaagcttgcgcaaatcattgagcgtttggtaaaaaacaccttttctccattattttctgcagtttgctggttttgtttgtagaactgtcgtagataattgcctctttctttttctttttttctcttttttttttggcttttgcaggagcaaggtgatctcaagcttcgtgtcagaacattggagtcagaaagagcattccaaagagttgcagctgtacagaaaacaattggatatgtgagttcagaattgttgatgaatggtttactttttgtatttcactatgctagtacaggaaaaaaatgcaaggtttttcttggaccgagttagttggaactggtgcagataataaattttgtgccgaaacatctttagagattaacctagggtgcttctgtttaaaggggaaaaatgtttggttgggtagaacagcctttaaattatgagaaaatccaagaaataccatttacaagtactcacttccaataaatgagtgtcaatccttgttacgtttttcgtataaaaaaactcaaaaaagttgtcatgagctctgccttatctattaagaggatcctagtttcttgaataaaactgtcttaagtgttttgagtaatgcacatcaccgtcttatggtttgttttgaaatggtgaaatctgcttgcgcatcacgcagggagttgccgcaggtagtttggtaaacctcgccaccgttctctacctcaattcaatccgggtaagttaccaagtttccaaacaagccatgttcatctttttcatcagattactcttgcacagctgtttcactgcaccttcaatcatccactgcagttgccagcgaccatagcatactctctctgcgcgttcttcggcctacaagtccttgtcggccttttgaaggtcaagaagttggatcaacaggagagactgataaccggcactgcttgagtccgggcataaactggtgagagctgacccgtgatttttttggtgtcatccacagcggctatatatcttccccgttttttgtttctttctgtccaaattttagatcccctacacgttgtagcatagccatcggtgtacgataactgtatatgtagatgcggtgaatagatgaaaatgtacatagtgtacaatagacattcactgaggtgttaaggtgcttttgtggttgcaattcaatcttaaatctctcagatgaaatgag</dnaseqindica>|
| + | |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001053747.1 RefSeq:Os02g0575500]|
| + | ==Labs working on this gene== |
| − | }}
| + | * Jiangsu Provincial Key Laboratory of Crop Genetics and Physiology, Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, Yangzhou 225009,PR China |
| − | [[Category:Genes]] | + | * School of Life Science, Huaiyin Normal University, Huai'an 223300, PR China |
| − | [[Category:Japonica mRNA]]
| + | |
| − | [[Category:Oryza Sativa Japonica Group]] | + | ==References== |
| − | [[Category:Japonica Genes]] | + | <references> |
| − | [[Category:Japonica Chromosome 2]]
| + | * <ref name="ref1"> |
| − | [[Category:Chromosome 2]]
| + | Gao, Q., Yang, Z., Zhou, Y., Yin, Z., Qiu, J., Liang, G. and Xu, C., 2012. Characterization of an Abc1 kinase family gene OsABC1-2 conferring enhanced tolerance to dark-induced stress in rice. Gene, 498(2), pp.155-163. |
| | + | </ref> |
| | + | |
| | + | </references> |
| | + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]] |
