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| − | Please input one-sentence summary here.
| + | The rice '''''Os04g0452100''''' was reported as '''''cry1b''''' in 2012 <ref name="ref1" /> by researchers from Japan. |
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| | ==Annotated Information== | | ==Annotated Information== |
| | + | ===Gene Symbol=== |
| | + | *'''''Os04g0452100''''' '''<=>''' '''''OsCRY1b,cry1b,OsCRY2''''' |
| | ===Function=== | | ===Function=== |
| − | Please input function information here.
| + | * The genes cryptochrome 1 (cry1), consisting of two species in rice plants ('''''cry1a''''' and '''''cry1b'''''), is indispensable for robust induction of the GA2ox genes. |
| − | | + | * In rice seedlings, phytochromes mediate the repression of gibberellin biosynthesis capacity, while '''''cry1a''''' and '''''cry1b''''' mediates the induction of gibberellin inactivation capacity. |
| − | ===Expression===
| + | * The '''''cry1a''''' and '''''cry1b''''' action was demonstrated to be dominant in the reduction of active gibberellin content, but, in rice seedlings, the cumulative effects of these independent actions reduced active gibberellin content in the light. |
| − | Please input expression information here.
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| − | | |
| − | ===Evolution===
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| − | Please input evolution information here.
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| | You can also add sub-section(s) at will. | | You can also add sub-section(s) at will. |
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| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | Please input related labs here.
| + | * Photobiology and Photosynthesis Research Unit, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, 305-8602 Japan |
| | + | * RIKEN Plant Science Center, Yokohama, Kanagawa, 230-0045 Japan |
| | + | * Genome Resource Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, 305-8602 Japan |
| | + | * Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, 305-8602 Japan |
| | + | * Functional Plant Research Unit, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, 305-8602 Japan. |
| | | | |
| | ==References== | | ==References== |
| − | Please input cited references here.
| + | <references> |
| | + | * <ref name="ref1"> |
| | + | Hirose F, Inagaki N, Hanada A, Yamaguchi S, Kamiya Y, Miyao A, Hirochika H, |
| | + | Takano M. Cryptochrome and phytochrome cooperatively but independently reduce |
| | + | active gibberellin content in rice seedlings under light irradiation. Plant Cell |
| | + | Physiol. 2012 Sep;53(9):1570-82. doi: 10.1093/pcp/pcs097. PubMed PMID: 22764280; |
| | + | PubMed Central PMCID: PMC3439870. |
| | + | </ref> |
| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]] |
| − | GeneName = Os04g0452100|
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| − | Description = Similar to Cryptochrome 1|
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| − | Version = NM_001059485.1 GI:115458699 GeneID:4336008|
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| − | Length = 5131 bp|
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| − | Definition = Oryza sativa Japonica Group Os04g0452100, complete gene.|
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| − | Source = Oryza sativa Japonica Group
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| − | | |
| − | ORGANISM Oryza sativa Japonica Group
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| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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| − | clade; Ehrhartoideae; Oryzeae; Oryza.
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| − | |
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| − | Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|
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| − | AP = Chromosome 4:22948432..22953562|
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| − | CDS = 22948833..22949190,22950214..22950432,22950706..22951412,22951544..22952362|
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| − | GCID = <gbrowseImage1>
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| − | name=NC_008397:22948432..22953562
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| − | source=RiceChromosome04
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| − | preset=GeneLocation
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| − | </gbrowseImage1>|
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| − | GSID = <gbrowseImage2>
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| − | name=NC_008397:22948432..22953562
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| − | source=RiceChromosome04
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| − | preset=GeneLocation
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| − | </gbrowseImage2>|
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| − | CDNA = <cdnaseq>atgtcggtgtcgtcgtcgtccatgggcggcggcggtggcggggacgccggggggaggacggtggtgtggttcaggagggacctgagggtggaggacaacccggcgctggcggcggcggcgcgcgccggcggggaggtggtgccggcgtacgtgtgggcgcccgaggaggacgggccgtactaccccggccgcgtgtcgcggtggtggctcagccagagcctgaagcacctcgacgcctcgctgcggcggctcggcgccggcaagctggtgacgaggaggtcggccgacgccgtcgtcgcgctgctccagctcgtccgcgacaccggcgccacgcggctcttcttcaaccatctctacgacccgatctcactggtcagggaccaccggctgaaggagatgatggcagcggagggcatcatcgtgcagtctttcaatgcagacctgctgtacgagccgtgggaagttgtcgacgacgaaggccaatctttcaccatgtttgcgcctttctggaataggtgcctcagcatgccgtatgatcctgccgcaccgctgttgcctcctaagagaatcaattcaggtgacttatcaatgtgcccatcagatgatctgatctttgaggatgactcggagaggggaagcaatgcacttcttgcccgagcatggtcaccaggctggcagaatgcagacaaggcactgacagctttcctgaatggtcctttgatccactactcagtgaatcgcaagaaagcagacagtgcaagtacctccctcttatcaccgtacctgcatttcggtgagctgagtgtgcgcaaggtcttccaccttgttcggatgaagcagcttgtgtggagcaatgagggcaatcgtgcagctgaagagagctgcaccctgttccttcggtccattggtctccgggagtactcacggtatctgagtttcaaccacccatgcagccatgagaagccccttttggcacacctcaggttcttcccctgggtgatcaatgagtgctacttcaagatatggcggcagggaaggactggttacccccttgttgatgccggcatgagggagctatgggctacagggtggttgcatgatcgtattcgtgtggtagtgtcaagtttcttcgtcaaagtccttcaactaccatggcgatgggggatgaagtacttttgggacacattattagacgcagatcttgagagcgatgcactaggctggcagtatatctctggctctcttcctgatggccgagaacttgaccgcattgacaatcctcagctcgaaggctacaagtttgatccgcatggtgagtatgtccgaaggtggcttccggagcttgcaaggttgccaacagaatggatacaccatccatgggatgcacccgcatctgtgctgcaagctgcaggagtcgagttaggctccaactaccctctccctatagttgggctagatgcagccaacgccaggctgcaagaagccctgtcagaaatgtggcagcttgaggcagcatccagggccgcaatggacaatggaatggaagaaggccttggcgactcctcggaggttccaccaattgaatttcctcgagaactacagatggaagttgaccgagaaccagctcgagtaacagccaatgtgctgacaacagctcgaagacgcgaggatcagatggtgccaacaatgacatcttcactaaacagggctgaaactgagatttctgccgattttatgaacagtgtggacagtagggcagaggtaccaacccgtgtgaattttgagcctcgaactgagcgggaagaaaatttccgtaccactgcgggaaatgttgctagaacaaatggtattcatgagcacaataatttccagcaacctcagcaccgtatgcgaaatgttctagcaccatctgtatcagaggcatcaagtggctggactgggagagagggaggcgtagtcccagtttggtcgcctcctgcagcatcagaccattcagaaacttttgcctctgatgaagctgacatttctagtaggagttatttggataggcatccacagtcgcaccggttgatgaactggagtcaattatcccagtcattgtga</cdnaseq>|
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| − | AA = <aaseq>MSVSSSSMGGGGGGDAGGRTVVWFRRDLRVEDNPALAAAARAGG EVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLDASLRRLGAGKLVTRRSADAVVALL QLVRDTGATRLFFNHLYDPISLVRDHRLKEMMAAEGIIVQSFNADLLYEPWEVVDDEG QSFTMFAPFWNRCLSMPYDPAAPLLPPKRINSGDLSMCPSDDLIFEDDSERGSNALLA RAWSPGWQNADKALTAFLNGPLIHYSVNRKKADSASTSLLSPYLHFGELSVRKVFHLV RMKQLVWSNEGNRAAEESCTLFLRSIGLREYSRYLSFNHPCSHEKPLLAHLRFFPWVI NECYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYF WDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGYKFDPHGEYVRRWLPELAR LPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVGLDAANARLQEALSEMWQLEAASRA AMDNGMEEGLGDSSEVPPIEFPRELQMEVDREPARVTANVLTTARRREDQMVPTMTSS LNRAETEISADFMNSVDSRAEVPTRVNFEPRTEREENFRTTAGNVARTNGIHEHNNFQ QPQHRMRNVLAPSVSEASSGWTGREGGVVPVWSPPAASDHSETFASDEADISSRSYLD RHPQSHRLMNWSQLSQSL</aaseq>|
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| − | DNA = <dnaseqindica>402..759#1783..2001#2275..2981#3113..3931#caacctctctctccattggactagaaacgccaactgcaagaacacccaacaccaaacaaagaccggccaaaattttatacaccggaaaatacacgggaaaagaaaggaagagaaaaaaaaaggaggcgcctttgctgctttgcagttgcagagcagctcgcgccgcgcgcgtacactcgctttgctttgcttcttcgccggaaaaaacccaatccaatcaagcggagctcgagctccaatccagctatagttgggaatctcgaggggggaaggaggaagaagaagaagaagaagcagtgagctttggagtttgagctggctagctccatgcttcgggtgacgtcctcttgatccaagaactcgtgggggggttggttcttggattggattgggtgcatatcatgtcggtgtcgtcgtcgtccatgggcggcggcggtggcggggacgccggggggaggacggtggtgtggttcaggagggacctgagggtggaggacaacccggcgctggcggcggcggcgcgcgccggcggggaggtggtgccggcgtacgtgtgggcgcccgaggaggacgggccgtactaccccggccgcgtgtcgcggtggtggctcagccagagcctgaagcacctcgacgcctcgctgcggcggctcggcgccggcaagctggtgacgaggaggtcggccgacgccgtcgtcgcgctgctccagctcgtccgcgacaccggcgccacgcggctcttcttcaaccatctctacggtttgcttttgctagctttgtgctttttttattattatttttatacaagaaaaggagatatgccttttagattgtttctggcatcaaagtcttcacatgtggcaaatctttctgttagatatgttgatcgaatctcatggcaagtccatgcttttaggggcaattctagcttgaagttatgatttgattggatgacatgataacaatgcaacttctctgtttcgcttgcatcttcattacagttttcatcagattcgcgtcaagtttgagctagatctactccatcattttaacagtattatgtggcactacttggatatattaatatactacacctccatctccatggtccacatgccaactatgttccagtttagctaccattgttttagagcaaaacttcagaagttcccagttttagtaatctgcctttacactttgatcattaagaacatttcgccatctactagtactacctttttattatttctgaaagctcttgctgccaccaaccgactaatttaaagaggcaataatcatatgaggagatcaatgtcgtgttggattttcctctttgtagtcttaccccccaacctatataaggtgggcagggagcccttcaagctaagccacaatcagatcgtcagattaatacaacacccatataatccttgaaacaggagtagggtattacttctaattgagaaggcctaaacctgtctaaacctttgtccctttactcatccactttaggtctcatgcgctaccccatttcttgttgccgatttctagaatcaacatcaaccaaccaatttaaagaggcaataatcacatgccagctccatatttagttaacactcattcactcaacataagcacttgtacggttgtactttctagtatattgtctaaaattcagtatctatcaattgttcgtgttgagactagaggtttatgctttgtaaccttgacactcatgacctcgcataactctatactcattggtcacggctgtcttttcagacccgatctcactggtcagggaccaccggctgaaggagatgatggcagcggagggcatcatcgtgcagtctttcaatgcagacctgctgtacgagccgtgggaagttgtcgacgacgaaggccaatctttcaccatgtttgcgcctttctggaataggtgcctcagcatgccgtatgatcctgccgcaccgctgttgcctcctaagagaatcaattcaggtacttggagaattaaattcaaatggtttagtttctacttattcagaaaaaatgtattggttactggcatattaggcactggtattgttcttgcatcagagtaagaacatttcaactgtttgaatgttctgcctttctgtttttacttgctatatatgggcaaattttagctattaatcactaatacttttttggtacataacaatattttgtttctaacactgcactacaagttgaaacagttcggtcaattcactgataaattttcaacaggtgacttatcaatgtgcccatcagatgatctgatctttgaggatgactcggagaggggaagcaatgcacttcttgcccgagcatggtcaccaggctggcagaatgcagacaaggcactgacagctttcctgaatggtcctttgatccactactcagtgaatcgcaagaaagcagacagtgcaagtacctccctcttatcaccgtacctgcatttcggtgagctgagtgtgcgcaaggtcttccaccttgttcggatgaagcagcttgtgtggagcaatgagggcaatcgtgcagctgaagagagctgcaccctgttccttcggtccattggtctccgggagtactcacggtatctgagtttcaaccacccatgcagccatgagaagccccttttggcacacctcaggttcttcccctgggtgatcaatgagtgctacttcaagatatggcggcagggaaggactggttacccccttgttgatgccggcatgagggagctatgggctacagggtggttgcatgatcgtattcgtgtggtagtgtcaagtttcttcgtcaaagtccttcaactaccatggcgatgggggatgaagtacttttgggacacattattagacgcagatcttgagagcgatgcactaggctggcagtatatctctggctctcttcctgatggccgagaacttgaccgcattgacaatcctcaggtaggtcaaactattaattattatctaaagaaaaagtcaaactattaatttcagaagaaaatgcaatccagtgataacaaaagtttctgaatattgatgcattatcttgtgaatccaattgtgcattgcagctcgaaggctacaagtttgatccgcatggtgagtatgtccgaaggtggcttccggagcttgcaaggttgccaacagaatggatacaccatccatgggatgcacccgcatctgtgctgcaagctgcaggagtcgagttaggctccaactaccctctccctatagttgggctagatgcagccaacgccaggctgcaagaagccctgtcagaaatgtggcagcttgaggcagcatccagggccgcaatggacaatggaatggaagaaggccttggcgactcctcggaggttccaccaattgaatttcctcgagaactacagatggaagttgaccgagaaccagctcgagtaacagccaatgtgctgacaacagctcgaagacgcgaggatcagatggtgccaacaatgacatcttcactaaacagggctgaaactgagatttctgccgattttatgaacagtgtggacagtagggcagaggtaccaacccgtgtgaattttgagcctcgaactgagcgggaagaaaatttccgtaccactgcgggaaatgttgctagaacaaatggtattcatgagcacaataatttccagcaacctcagcaccgtatgcgaaatgttctagcaccatctgtatcagaggcatcaagtggctggactgggagagagggaggcgtagtcccagtttggtcgcctcctgcagcatcagaccattcagaaacttttgcctctgatgaagctgacatttctagtaggagttatttggataggcatccacagtcgcaccggttgatgaactggagtcaattatcccagtcattgtgagttcagatgcacggtaactgattggtctcagtaagttgaattgatgttgcacttgctcacaattttgcaacactttatcatagtatggaaacttctcgcataataccaatatagtatctaaaaaatgtttgttttatgcatgaagccacacaagattatgaatggctggacaacttttgatcttgttttcatttttcgtggctagacaacttgttttatcttgttttctgtatatatgtatttgtatttaacttttatttatttatatatacacgctgtaggagcctctcctacagtaattttcctaacaaagaaatattacaatcatgtatgtagacctataaacaaaaaggtcattagaaattgaaaggtagcttcttgggtatattgtatgaccatgtaaaagcctgagtcctatggaaattgacatataaaggaacgaggtctattttacctaaactttgaccaagacatttcccccctcattttattaccagaattactacctaacatttcacatttatgtcaactctcttctatctattctcctccctctatagattcttttgcggcgtataaaaatcttattctatgttattcttgcatgataacatccacatctcatcagggattcacaagcctgcagacaccgcttctgtacaagccgattacttggctttagttatatattatatagtccaacttttggttgtacaagccgattacttggctttagttatatattatatagtccaacttttggttgccttcaactaactgttcactaaaatataagattgatgtgccaacatttctaacatcatctaatattttatgaatcttggattgcaggacaacaggtcgggaagtggaaaattccatgcaaccaaattggatcggttagggttttctccgccccagattcatatgtaaattgtccacctatgtgcttatctatagtctgatgagcatgcaagccaggcaatttcctgagtgtgacaatagttgtgtaaatctaatcctgtagaacctattctgttgtaacagcattgttagagttggctgaaagggatatgtaatattgatcagacaacgagggttttcctagtgtcacgcgtatagtatttttagggggagtcttgtctatacctgtacattcccttgtgctattggcaatctattatcactacttttgtgttg</dnaseqindica>|
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| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001059485.1 RefSeq:Os04g0452100]|
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| − | }}
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| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
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| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 4]]
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| − | [[Category:Chromosome 4]]
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