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| − | {{JaponicaGene|
| + | The rice '''''Os04g0452100''''' was reported as '''''cry1b''''' in 2012 <ref name="ref1" /> by researchers from Japan. |
| − | GeneName = Os04g0452100|
| |
| − | Description = Similar to Cryptochrome 1|
| |
| − | Version = NM_001059485.1 GI:115458699 GeneID:4336008|
| |
| − | Length = 5131 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os04g0452100, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os04g0452100''''' '''<=>''' '''''OsCRY1b,cry1b,OsCRY2''''' |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | ===Function=== |
| − | |
| + | * The genes cryptochrome 1 (cry1), consisting of two species in rice plants ('''''cry1a''''' and '''''cry1b'''''), is indispensable for robust induction of the GA2ox genes. |
| − | Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|
| + | * In rice seedlings, phytochromes mediate the repression of gibberellin biosynthesis capacity, while '''''cry1a''''' and '''''cry1b''''' mediates the induction of gibberellin inactivation capacity. |
| − | AP = Chromosome 4:22948432..22953562|
| + | * The '''''cry1a''''' and '''''cry1b''''' action was demonstrated to be dominant in the reduction of active gibberellin content, but, in rice seedlings, the cumulative effects of these independent actions reduced active gibberellin content in the light. |
| − | CDS = 22948833..22949190,22950214..22950432,22950706..22951412,22951544..22952362|
| + | |
| − | GCID = <gbrowseImage1>
| + | You can also add sub-section(s) at will. |
| − | name=NC_008397:22948432..22953562
| + | |
| − | source=RiceChromosome04
| + | ==Labs working on this gene== |
| − | preset=GeneLocation
| + | * Photobiology and Photosynthesis Research Unit, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, 305-8602 Japan |
| − | </gbrowseImage1>|
| + | * RIKEN Plant Science Center, Yokohama, Kanagawa, 230-0045 Japan |
| − | GSID = <gbrowseImage2>
| + | * Genome Resource Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, 305-8602 Japan |
| − | name=NC_008397:22948432..22953562
| + | * Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, 305-8602 Japan |
| − | source=RiceChromosome04
| + | * Functional Plant Research Unit, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, 305-8602 Japan. |
| − | preset=GeneLocation
| + | |
| − | </gbrowseImage2>| | + | ==References== |
| − | CDNA = <cdnaseq>atgtcggtgtcgtcgtcgtccatgggcggcggcggtggcggggacgccggggggaggacggtggtgtggttcaggagggacctgagggtggaggacaacccggcgctggcggcggcggcgcgcgccggcggggaggtggtgccggcgtacgtgtgggcgcccgaggaggacgggccgtactaccccggccgcgtgtcgcggtggtggctcagccagagcctgaagcacctcgacgcctcgctgcggcggctcggcgccggcaagctggtgacgaggaggtcggccgacgccgtcgtcgcgctgctccagctcgtccgcgacaccggcgccacgcggctcttcttcaaccatctctacgacccgatctcactggtcagggaccaccggctgaaggagatgatggcagcggagggcatcatcgtgcagtctttcaatgcagacctgctgtacgagccgtgggaagttgtcgacgacgaaggccaatctttcaccatgtttgcgcctttctggaataggtgcctcagcatgccgtatgatcctgccgcaccgctgttgcctcctaagagaatcaattcaggtgacttatcaatgtgcccatcagatgatctgatctttgaggatgactcggagaggggaagcaatgcacttcttgcccgagcatggtcaccaggctggcagaatgcagacaaggcactgacagctttcctgaatggtcctttgatccactactcagtgaatcgcaagaaagcagacagtgcaagtacctccctcttatcaccgtacctgcatttcggtgagctgagtgtgcgcaaggtcttccaccttgttcggatgaagcagcttgtgtggagcaatgagggcaatcgtgcagctgaagagagctgcaccctgttccttcggtccattggtctccgggagtactcacggtatctgagtttcaaccacccatgcagccatgagaagccccttttggcacacctcaggttcttcccctgggtgatcaatgagtgctacttcaagatatggcggcagggaaggactggttacccccttgttgatgccggcatgagggagctatgggctacagggtggttgcatgatcgtattcgtgtggtagtgtcaagtttcttcgtcaaagtccttcaactaccatggcgatgggggatgaagtacttttgggacacattattagacgcagatcttgagagcgatgcactaggctggcagtatatctctggctctcttcctgatggccgagaacttgaccgcattgacaatcctcagctcgaaggctacaagtttgatccgcatggtgagtatgtccgaaggtggcttccggagcttgcaaggttgccaacagaatggatacaccatccatgggatgcacccgcatctgtgctgcaagctgcaggagtcgagttaggctccaactaccctctccctatagttgggctagatgcagccaacgccaggctgcaagaagccctgtcagaaatgtggcagcttgaggcagcatccagggccgcaatggacaatggaatggaagaaggccttggcgactcctcggaggttccaccaattgaatttcctcgagaactacagatggaagttgaccgagaaccagctcgagtaacagccaatgtgctgacaacagctcgaagacgcgaggatcagatggtgccaacaatgacatcttcactaaacagggctgaaactgagatttctgccgattttatgaacagtgtggacagtagggcagaggtaccaacccgtgtgaattttgagcctcgaactgagcgggaagaaaatttccgtaccactgcgggaaatgttgctagaacaaatggtattcatgagcacaataatttccagcaacctcagcaccgtatgcgaaatgttctagcaccatctgtatcagaggcatcaagtggctggactgggagagagggaggcgtagtcccagtttggtcgcctcctgcagcatcagaccattcagaaacttttgcctctgatgaagctgacatttctagtaggagttatttggataggcatccacagtcgcaccggttgatgaactggagtcaattatcccagtcattgtga</cdnaseq>|
| + | <references> |
| − | AA = <aaseq>MSVSSSSMGGGGGGDAGGRTVVWFRRDLRVEDNPALAAAARAGG EVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLDASLRRLGAGKLVTRRSADAVVALL QLVRDTGATRLFFNHLYDPISLVRDHRLKEMMAAEGIIVQSFNADLLYEPWEVVDDEG QSFTMFAPFWNRCLSMPYDPAAPLLPPKRINSGDLSMCPSDDLIFEDDSERGSNALLA RAWSPGWQNADKALTAFLNGPLIHYSVNRKKADSASTSLLSPYLHFGELSVRKVFHLV RMKQLVWSNEGNRAAEESCTLFLRSIGLREYSRYLSFNHPCSHEKPLLAHLRFFPWVI NECYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYF WDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGYKFDPHGEYVRRWLPELAR LPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVGLDAANARLQEALSEMWQLEAASRA AMDNGMEEGLGDSSEVPPIEFPRELQMEVDREPARVTANVLTTARRREDQMVPTMTSS LNRAETEISADFMNSVDSRAEVPTRVNFEPRTEREENFRTTAGNVARTNGIHEHNNFQ QPQHRMRNVLAPSVSEASSGWTGREGGVVPVWSPPAASDHSETFASDEADISSRSYLD RHPQSHRLMNWSQLSQSL</aaseq>|
| + | * <ref name="ref1"> |
| − | DNA = <dnaseqindica>402..759#1783..2001#2275..2981#3113..3931#caacctctctctccattggactagaaacgccaactgcaagaacacccaacaccaaacaaagaccggccaaaattttatacaccggaaaatacacgggaaaagaaaggaagagaaaaaaaaaggaggcgcctttgctgctttgcagttgcagagcagctcgcgccgcgcgcgtacactcgctttgctttgcttcttcgccggaaaaaacccaatccaatcaagcggagctcgagctccaatccagctatagttgggaatctcgaggggggaaggaggaagaagaagaagaagaagcagtgagctttggagtttgagctggctagctccatgcttcgggtgacgtcctcttgatccaagaactcgtgggggggttggttcttggattggattgggtgcatatcatgtcggtgtcgtcgtcgtccatgggcggcggcggtggcggggacgccggggggaggacggtggtgtggttcaggagggacctgagggtggaggacaacccggcgctggcggcggcggcgcgcgccggcggggaggtggtgccggcgtacgtgtgggcgcccgaggaggacgggccgtactaccccggccgcgtgtcgcggtggtggctcagccagagcctgaagcacctcgacgcctcgctgcggcggctcggcgccggcaagctggtgacgaggaggtcggccgacgccgtcgtcgcgctgctccagctcgtccgcgacaccggcgccacgcggctcttcttcaaccatctctacggtttgcttttgctagctttgtgctttttttattattatttttatacaagaaaaggagatatgccttttagattgtttctggcatcaaagtcttcacatgtggcaaatctttctgttagatatgttgatcgaatctcatggcaagtccatgcttttaggggcaattctagcttgaagttatgatttgattggatgacatgataacaatgcaacttctctgtttcgcttgcatcttcattacagttttcatcagattcgcgtcaagtttgagctagatctactccatcattttaacagtattatgtggcactacttggatatattaatatactacacctccatctccatggtccacatgccaactatgttccagtttagctaccattgttttagagcaaaacttcagaagttcccagttttagtaatctgcctttacactttgatcattaagaacatttcgccatctactagtactacctttttattatttctgaaagctcttgctgccaccaaccgactaatttaaagaggcaataatcatatgaggagatcaatgtcgtgttggattttcctctttgtagtcttaccccccaacctatataaggtgggcagggagcccttcaagctaagccacaatcagatcgtcagattaatacaacacccatataatccttgaaacaggagtagggtattacttctaattgagaaggcctaaacctgtctaaacctttgtccctttactcatccactttaggtctcatgcgctaccccatttcttgttgccgatttctagaatcaacatcaaccaaccaatttaaagaggcaataatcacatgccagctccatatttagttaacactcattcactcaacataagcacttgtacggttgtactttctagtatattgtctaaaattcagtatctatcaattgttcgtgttgagactagaggtttatgctttgtaaccttgacactcatgacctcgcataactctatactcattggtcacggctgtcttttcagacccgatctcactggtcagggaccaccggctgaaggagatgatggcagcggagggcatcatcgtgcagtctttcaatgcagacctgctgtacgagccgtgggaagttgtcgacgacgaaggccaatctttcaccatgtttgcgcctttctggaataggtgcctcagcatgccgtatgatcctgccgcaccgctgttgcctcctaagagaatcaattcaggtacttggagaattaaattcaaatggtttagtttctacttattcagaaaaaatgtattggttactggcatattaggcactggtattgttcttgcatcagagtaagaacatttcaactgtttgaatgttctgcctttctgtttttacttgctatatatgggcaaattttagctattaatcactaatacttttttggtacataacaatattttgtttctaacactgcactacaagttgaaacagttcggtcaattcactgataaattttcaacaggtgacttatcaatgtgcccatcagatgatctgatctttgaggatgactcggagaggggaagcaatgcacttcttgcccgagcatggtcaccaggctggcagaatgcagacaaggcactgacagctttcctgaatggtcctttgatccactactcagtgaatcgcaagaaagcagacagtgcaagtacctccctcttatcaccgtacctgcatttcggtgagctgagtgtgcgcaaggtcttccaccttgttcggatgaagcagcttgtgtggagcaatgagggcaatcgtgcagctgaagagagctgcaccctgttccttcggtccattggtctccgggagtactcacggtatctgagtttcaaccacccatgcagccatgagaagccccttttggcacacctcaggttcttcccctgggtgatcaatgagtgctacttcaagatatggcggcagggaaggactggttacccccttgttgatgccggcatgagggagctatgggctacagggtggttgcatgatcgtattcgtgtggtagtgtcaagtttcttcgtcaaagtccttcaactaccatggcgatgggggatgaagtacttttgggacacattattagacgcagatcttgagagcgatgcactaggctggcagtatatctctggctctcttcctgatggccgagaacttgaccgcattgacaatcctcaggtaggtcaaactattaattattatctaaagaaaaagtcaaactattaatttcagaagaaaatgcaatccagtgataacaaaagtttctgaatattgatgcattatcttgtgaatccaattgtgcattgcagctcgaaggctacaagtttgatccgcatggtgagtatgtccgaaggtggcttccggagcttgcaaggttgccaacagaatggatacaccatccatgggatgcacccgcatctgtgctgcaagctgcaggagtcgagttaggctccaactaccctctccctatagttgggctagatgcagccaacgccaggctgcaagaagccctgtcagaaatgtggcagcttgaggcagcatccagggccgcaatggacaatggaatggaagaaggccttggcgactcctcggaggttccaccaattgaatttcctcgagaactacagatggaagttgaccgagaaccagctcgagtaacagccaatgtgctgacaacagctcgaagacgcgaggatcagatggtgccaacaatgacatcttcactaaacagggctgaaactgagatttctgccgattttatgaacagtgtggacagtagggcagaggtaccaacccgtgtgaattttgagcctcgaactgagcgggaagaaaatttccgtaccactgcgggaaatgttgctagaacaaatggtattcatgagcacaataatttccagcaacctcagcaccgtatgcgaaatgttctagcaccatctgtatcagaggcatcaagtggctggactgggagagagggaggcgtagtcccagtttggtcgcctcctgcagcatcagaccattcagaaacttttgcctctgatgaagctgacatttctagtaggagttatttggataggcatccacagtcgcaccggttgatgaactggagtcaattatcccagtcattgtgagttcagatgcacggtaactgattggtctcagtaagttgaattgatgttgcacttgctcacaattttgcaacactttatcatagtatggaaacttctcgcataataccaatatagtatctaaaaaatgtttgttttatgcatgaagccacacaagattatgaatggctggacaacttttgatcttgttttcatttttcgtggctagacaacttgttttatcttgttttctgtatatatgtatttgtatttaacttttatttatttatatatacacgctgtaggagcctctcctacagtaattttcctaacaaagaaatattacaatcatgtatgtagacctataaacaaaaaggtcattagaaattgaaaggtagcttcttgggtatattgtatgaccatgtaaaagcctgagtcctatggaaattgacatataaaggaacgaggtctattttacctaaactttgaccaagacatttcccccctcattttattaccagaattactacctaacatttcacatttatgtcaactctcttctatctattctcctccctctatagattcttttgcggcgtataaaaatcttattctatgttattcttgcatgataacatccacatctcatcagggattcacaagcctgcagacaccgcttctgtacaagccgattacttggctttagttatatattatatagtccaacttttggttgtacaagccgattacttggctttagttatatattatatagtccaacttttggttgccttcaactaactgttcactaaaatataagattgatgtgccaacatttctaacatcatctaatattttatgaatcttggattgcaggacaacaggtcgggaagtggaaaattccatgcaaccaaattggatcggttagggttttctccgccccagattcatatgtaaattgtccacctatgtgcttatctatagtctgatgagcatgcaagccaggcaatttcctgagtgtgacaatagttgtgtaaatctaatcctgtagaacctattctgttgtaacagcattgttagagttggctgaaagggatatgtaatattgatcagacaacgagggttttcctagtgtcacgcgtatagtatttttagggggagtcttgtctatacctgtacattcccttgtgctattggcaatctattatcactacttttgtgttg</dnaseqindica>|
| + | Hirose F, Inagaki N, Hanada A, Yamaguchi S, Kamiya Y, Miyao A, Hirochika H, |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001059485.1 RefSeq:Os04g0452100]|
| + | Takano M. Cryptochrome and phytochrome cooperatively but independently reduce |
| − | }}
| + | active gibberellin content in rice seedlings under light irradiation. Plant Cell |
| − | [[Category:Genes]] | + | Physiol. 2012 Sep;53(9):1570-82. doi: 10.1093/pcp/pcs097. PubMed PMID: 22764280; |
| − | [[Category:Japonica mRNA]]
| + | PubMed Central PMCID: PMC3439870. |
| − | [[Category:Oryza Sativa Japonica Group]] | + | </ref> |
| − | [[Category:Japonica Genes]]
| + | |
| − | [[Category:Japonica Chromosome 4]] | + | ==Structured Information== |
| − | [[Category:Chromosome 4]]
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]] |
