Difference between revisions of "Os10g0499500"

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(Created page with "{{JaponicaGene| GeneName = Os10g0499500| Description = Similar to Fertility restorer| Version = NM_001071510.1 GI:115482763 GeneID:4349026| Length = 2497 bp| Definition =...")
 
(Labs working on this gene)
 
(5 intermediate revisions by 3 users not shown)
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{{JaponicaGene|
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The rice gene Os10g0499500 was reported as '''''RF1b''''' in 2006<ref name="ref1" /> by researchers from China.
GeneName = Os10g0499500|
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==Annotated Information==
Description = Similar to Fertility restorer|
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===Gene Symbol===
Version = NM_001071510.1 GI:115482763 GeneID:4349026|
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*'''''Os10g0499500 <=> RF1b, Rf-1B, PPR7
Length = 2497 bp|
 
Definition = Oryza sativa Japonica Group Os10g0499500, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
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===Function===
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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* Two fertility restorer genes, '''''Rf1a''''' and '''''Rf1b''''', were identified at the classical locus Rf-1 as members of a multigene cluster that encode pentatricopeptide repeat proteins. '''''RF1A''''' and '''''RF1B''''' are both targeted to mitochondria and can restore male fertility by blocking ORF79 production via endonucleolytic cleavage (RF1A) or degradation (RF1B) of dicistronic B-atp6/orf79 mRNA.
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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            clade; Ehrhartoideae; Oryzeae; Oryza.
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* '''''Rf1a''''' and '''''Rf1b''''' function independently to restore male fertility by silencing the CMS gene via different RNA processing pathways.
|
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Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|
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===Expression ===
AP = Chromosome 10:19514088..19516584|
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===Evolution===
CDS = 19514342..19515862|
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GCID = <gbrowseImage1>
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You can also add sub-section(s) at will.
name=NC_008403:19514088..19516584
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==Labs working on this gene==
source=RiceChromosome10
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* Key Laboratory of Plant Functional Genomics and Biotechnology of Guangdong Province, College of Life Sciences, South China Agricultural University, Guangzhou 510642, China
preset=GeneLocation
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* Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China
</gbrowseImage1>|
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* School of Life Science and Biotechnology, Shanghai Jiao Tong University, Shanghai 200030, China
GSID = <gbrowseImage2>
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* School of Life Sciences, Fudan University, Shanghai 200433, China
name=NC_008403:19514088..19516584
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source=RiceChromosome10
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==References==
preset=GeneLocation
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<references>
</gbrowseImage2>|
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* <ref name="ref1">
CDNA = <cdnaseq>atggcacgccgcgtcgctgcccgcgcccgcgcccgcgccggcggcgtcccgcgctcggagggtacgatccaagaccgagcacgcgttgggagcggtggcgccgaggacgcactcgacgtgttcgacgaattgctccggcgaggcatcggcgctccgatccgcagcttgaacggcgctctcgccgacgtcgcgcgcgacaaccccgcggccgctgtgtcccgcttcaaccgcatggcacgagctggtgccagcatggtaactcccaccgtgcacacctatggcatcctcatcggctgctgctgcagtgcgggccgcttagacctcggtttcgcggccttgggccatgtcgttaagaagggattcagagtggaacccatcatctttaatcctctgctcaagggcctctgtgcagacaagaggacggacgacgcaatggacatagtgctccgtggaatgaccgagctcagctgcgtgccaaatgtcttctcccacaccattattctcaagggactctgtcatgagaacagaagccaagaagctctcgagctgctccacatgatggctgatgatggaggaggctgcttacctaatgttgtgtcatacagcaccgtcatcgatggcctcttgaaaggaggggatccggacaaagcctacgctacataccgtgaaatgcttgaccggaggattttgccaaatgttgtgatttacagctccattattgctgccctatgcaagggtcaagcaatggacaaggccatggaggtacacgataggatggttaagaatggagttacacccaattgcttcacgtatactagtcttgtgcatggattttgctcttcagggcagttgacagaggctattaaatttctagaaaagatgtgcagcaatggtgttgaaccaaatgttgttacttatagctcgtttatggactatctctgcaagaacggaagatgcacagaagctagaaagatttttgattctatggtcaagaggggcctaaagcctgatattactacctacagtagcttacttcatgggtatgctatcgaaggagctcttgttgagatgcatggtctctttgatttgatggtacaaagtgatatgcaacccgatcattatgtcttcaacacactaatatatgcatccgccaagcaaggaaaagtagatgaggccatgcttgtatttagcaaaatgaggcagcaaggattgaaacctaattgtgttacgtatagcactttgattaatggctactgtaaaattactaggatggagaatgctttagcacttttccaagagatggtgagcaatggtgttagtcctaattttatcacatataacataatgctgcaaggtttatttcgtacaggaagaactgctactgcaaaagaattctatgtacagattatcaaaagtggcaaaaaagatcttatagaacaggggttgctagaagaattggatgatctatttctttcaatggaggacaatgactgtagtactgtgtcgactcctgcatgctaa</cdnaseq>|
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Wang Z, Zou Y, Li X, et al. Cytoplasmic male sterility of rice with boro II cytoplasm is caused by a cytotoxic peptide and is restored by two related PPR motif genes via distinct modes of mRNA silencing[J]. The Plant Cell, 2006, 18(3): 676-687.
AA = <aaseq>MARRVAARARARAGGVPRSEGTIQDRARVGSGGAEDALDVFDEL                    LRRGIGAPIRSLNGALADVARDNPAAAVSRFNRMARAGASMVTPTVHTYGILIGCCCS                    AGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAMDIVLRGMTELSCVPN                    VFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVIDGLLKGGDPDKAY                    ATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVH                    GFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFDSMVKRGL                    KPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEA                    MLVFSKMRQQGLKPNCVTYSTLINGYCKITRMENALALFQEMVSNGVSPNFITYNIML                    QGLFRTGRTATAKEFYVQIIKSGKKDLIEQGLLEELDDLFLSMEDNDCSTVSTPAC</aaseq>|
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</ref>
DNA = <dnaseqindica>255..1775#gtcgtcttcttcccgcgcctttcgcgaagccaactgctcgaacggacgcacccgtgcagccgcgctcgtcggccgtcgccgtcgaggccgcccctccgccgccgccagcagctgatccgttcgccattccttcgcgcgctggttagttccaccttcctttgcctctggttcctagtttcctagtaaaccacggggtgatttattcagcgctgccgcaggtttccacctttccttgcccgtccgtcaggccggacatggcacgccgcgtcgctgcccgcgcccgcgcccgcgccggcggcgtcccgcgctcggagggtacgatccaagaccgagcacgcgttgggagcggtggcgccgaggacgcactcgacgtgttcgacgaattgctccggcgaggcatcggcgctccgatccgcagcttgaacggcgctctcgccgacgtcgcgcgcgacaaccccgcggccgctgtgtcccgcttcaaccgcatggcacgagctggtgccagcatggtaactcccaccgtgcacacctatggcatcctcatcggctgctgctgcagtgcgggccgcttagacctcggtttcgcggccttgggccatgtcgttaagaagggattcagagtggaacccatcatctttaatcctctgctcaagggcctctgtgcagacaagaggacggacgacgcaatggacatagtgctccgtggaatgaccgagctcagctgcgtgccaaatgtcttctcccacaccattattctcaagggactctgtcatgagaacagaagccaagaagctctcgagctgctccacatgatggctgatgatggaggaggctgcttacctaatgttgtgtcatacagcaccgtcatcgatggcctcttgaaaggaggggatccggacaaagcctacgctacataccgtgaaatgcttgaccggaggattttgccaaatgttgtgatttacagctccattattgctgccctatgcaagggtcaagcaatggacaaggccatggaggtacacgataggatggttaagaatggagttacacccaattgcttcacgtatactagtcttgtgcatggattttgctcttcagggcagttgacagaggctattaaatttctagaaaagatgtgcagcaatggtgttgaaccaaatgttgttacttatagctcgtttatggactatctctgcaagaacggaagatgcacagaagctagaaagatttttgattctatggtcaagaggggcctaaagcctgatattactacctacagtagcttacttcatgggtatgctatcgaaggagctcttgttgagatgcatggtctctttgatttgatggtacaaagtgatatgcaacccgatcattatgtcttcaacacactaatatatgcatccgccaagcaaggaaaagtagatgaggccatgcttgtatttagcaaaatgaggcagcaaggattgaaacctaattgtgttacgtatagcactttgattaatggctactgtaaaattactaggatggagaatgctttagcacttttccaagagatggtgagcaatggtgttagtcctaattttatcacatataacataatgctgcaaggtttatttcgtacaggaagaactgctactgcaaaagaattctatgtacagattatcaaaagtggcaaaaaagatcttatagaacaggggttgctagaagaattggatgatctatttctttcaatggaggacaatgactgtagtactgtgtcgactcctgcatgctaaattgcagagttacaaagttacttcaaaaaggggaagtaggcactaggcagtgctggggtttacatgtccaaaattgatcaaaataacctccccgttgaagcttcgactgttgatttgctgattttgctgatttcaagcaggaaattcaatcaaacatacggaatttctccctgaaaagttttgctctgaagtgaaatccatcctgtttgaaatggcctacagttatgcagttgtaactggctattgttggccttctcactgaattagtaatacaaacaagaaattctggaccactctatgtttggggatcacctttatctgttacatgtggattgctaggtacaaactgcccttttttttgtcacactatatctgattcccttcgaagaaaaattcccagatgatattatagttctctaattttgctactttttgtagctttgttagaactaatttattatctgctaaacttgcagtgacaaagattcccctgtatgataaatagcatagttagcagactgtttcacagaggtgcactaagcagagctggtgcttacctctccatgactgatgataagcacttctctctcaaagcatggtctgtttccctgttttatagatctttttttctggaggcaaacaccaagaatatcataggttttcccctgaaaagtacaagtatttatagaatattggaaccgctgaagatttttgcagctacg</dnaseqindica>|
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</references>
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071510.1 RefSeq:Os10g0499500]|
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}}
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[[Category:Genes]]
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==Structured Information==
[[Category:Japonica mRNA]]
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[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 10]]
[[Category:Oryza Sativa Japonica Group]]
 
[[Category:Japonica Genes]]
 
[[Category:Japonica Chromosome 10]]
 
[[Category:Chromosome 10]]
 

Latest revision as of 14:38, 14 February 2017

The rice gene Os10g0499500 was reported as RF1b in 2006[1] by researchers from China.

Annotated Information

Gene Symbol

  • Os10g0499500 <=> RF1b, Rf-1B, PPR7

Function

  • Two fertility restorer genes, Rf1a and Rf1b, were identified at the classical locus Rf-1 as members of a multigene cluster that encode pentatricopeptide repeat proteins. RF1A and RF1B are both targeted to mitochondria and can restore male fertility by blocking ORF79 production via endonucleolytic cleavage (RF1A) or degradation (RF1B) of dicistronic B-atp6/orf79 mRNA.
  • Rf1a and Rf1b function independently to restore male fertility by silencing the CMS gene via different RNA processing pathways.

Expression

Evolution

You can also add sub-section(s) at will.

Labs working on this gene

  • Key Laboratory of Plant Functional Genomics and Biotechnology of Guangdong Province, College of Life Sciences, South China Agricultural University, Guangzhou 510642, China
  • Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China
  • School of Life Science and Biotechnology, Shanghai Jiao Tong University, Shanghai 200030, China
  • School of Life Sciences, Fudan University, Shanghai 200433, China

References

  1. Wang Z, Zou Y, Li X, et al. Cytoplasmic male sterility of rice with boro II cytoplasm is caused by a cytotoxic peptide and is restored by two related PPR motif genes via distinct modes of mRNA silencing[J]. The Plant Cell, 2006, 18(3): 676-687.


Structured Information