Difference between revisions of "Os12g0614600"

From RiceWiki
Jump to: navigation, search
(Created page with "{{JaponicaGene| GeneName = Os12g0614600| Description = Protein kinase-like domain containing protein| Version = NM_001073800.1 GI:115489561 GeneID:4352785| Length = 1760 b...")
 
(Annotated Information)
 
(3 intermediate revisions by 2 users not shown)
Line 1: Line 1:
{{JaponicaGene|
+
The rice '''''Os12g0614600''''' was reported as '''''OsPID''''' in 2007 <ref name="ref1" /> by researchers from Japan.  
GeneName = Os12g0614600|
 
Description = Protein kinase-like domain containing protein|
 
Version = NM_001073800.1 GI:115489561 GeneID:4352785|
 
Length = 1760 bp|
 
Definition = Oryza sativa Japonica Group Os12g0614600, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
+
==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
+
[[File:228-Os12g0614600.png|right|thumb|327px|'''Figure 4.''' ''Phenotypes of OsPID overexpression.<ref name="ref1" />.'']]
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
+
===Gene Symbol===
            clade; Ehrhartoideae; Oryzeae; Oryza.
+
*'''''Os12g0614600''''' '''<=>''' '''''bif2,Osbif2,OsBIF2,OsPID'''''
|
+
===Function===
Chromosome = [[:category:Japonica Chromosome 12|Chromosome 12]]|
+
* '''''PINOID''''', is a serine threonine protein kinase in Arabidopsis, controls auxin distribution through a positive control of subcellular localization of PIN auxin efflux carriers.
AP = Chromosome 12:26281668..26283427|
+
* The rice '''''OsPID''''' probably plays a role in the pattern formation and organogenesis in the rice shoot.
CDS = 26281758..26283212|
+
 
GCID = <gbrowseImage1>
+
===Phenotypic analysis===
name=NC_008405:26281668..26283427
+
* Constitutive overexpression of OsPID caused a variety of abnormalities, such as delay of adventitious root development, curled growth of shoots and agravitropism. Abnormalities observed in the plants that overexpress OsPID could be phenocopied by treatment with an inhibitor of active polar transport of auxin, indicating that OsPID could be involved in the control of polar auxin transport in rice.
source=RiceChromosome12
+
 
preset=GeneLocation
+
===Evolution===
</gbrowseImage1>|
+
* Phylogenetic analysis showed that the rice genome contains a single PID ortholog, OsPID.
GSID = <gbrowseImage2>
+
 
name=NC_008405:26281668..26283427
+
You can also add sub-section(s) at will.
source=RiceChromosome12
+
 
preset=GeneLocation
+
==Labs working on this gene==
</gbrowseImage2>|
+
* Graduate School of Agriculture and Life Sciences, University of Tokyo, Yayoi, Bunkyo, Tokyo, 113-0032 Japan
CDNA = <cdnaseq>atggtggcggcggtgcgcgcgccggtgaagccggagatggtggagctctcgccggcggcgatggagaggtactcctccgacgccgacacgacggcgccgaactcgagccttagctcggcggcgagcagcacggggagcctcgcgcggtgctcgagcctgtcgcgcctgtcgttcgactgctcgccgtcggccgccgtggcggcggcggcgacgtcgtgctcgccgccgcgggcgtcggtgctgttgcggccgcacaggtccggcgacgtcgcgtgggcggccatccgcgcggcttcgacgacctccgcggcgccgctaggcccgcgggacttcaagctcgtgcggcgcatcggcggcggcgacatcgggacggtgtacctgtgccgcctccggagctcgccggagagggagagcccgtgcatgtacgcgatgaaggtggtggaccggagggcggtggcgaggaagcagaagctggggcgcgcggcggcggagaagcggatcctgcggcagctggaccaccccttcctccccaccctcttcgccgacttcgacgccacgccgcacttctcctgcgccgtcatggagttctgccccggcggcgacctccactccctccgccaccgcatgccgtcccgccgcttcccgctcccctccgcccgcttctacgccgccgaggtgctcctcgccatcgagtacctccacatgatgggcatcgtctaccgcgacctcaagcccgagaacgtcctcatccgcgccgacggccacatcatgctcaccgacttcgacctctcgctgcagtccaccacctcgccgtctctcgacggcgacaccgacaccgacgacgaggccagcggtggcgcgtcctgcttcccggaccacctcctccggttcaagcggcggcggaacgccgtggcggcgccgcgtccgcggttcgtggcggagccggtggatgcgaggtcgtgctcgttcgtggggacgcacgagtacgtggcccccgaggtggcgagcggcggcgcgcatggcgcggccgtggactggtgggcgtacggggtgttcctctacgagctcatctacggccgtacgccgttcgccggcgctacaaacgaggcgacgctccgcaacatcgtccgccgcccgctcgccttcccctccggctccggctcgtgcggtcccgccgacgccgacgcgcgcgacctcatcgcccgcctcctcgccaaggaccccgccgcccgcctcggctcccgccgcggcgccgccgacgtcaagtcccaccccttcttcaagtccctcaacctcgccctcctccgttcgtcgcgcccgcccgtcgtccccggcgccggcgccggcgccgcgccgctacaccggtcgcagtcgtgcaaggcggcgccgacaacgccgccgccgccgacgacgacgaagccggcgaacgccaccgcgcggttcgacctcttctga</cdnaseq>|
+
 
AA = <aaseq>MVAAVRAPVKPEMVELSPAAMERYSSDADTTAPNSSLSSAASST                    GSLARCSSLSRLSFDCSPSAAVAAAATSCSPPRASVLLRPHRSGDVAWAAIRAASTTS                    AAPLGPRDFKLVRRIGGGDIGTVYLCRLRSSPERESPCMYAMKVVDRRAVARKQKLGR                    AAAEKRILRQLDHPFLPTLFADFDATPHFSCAVMEFCPGGDLHSLRHRMPSRRFPLPS                    ARFYAAEVLLAIEYLHMMGIVYRDLKPENVLIRADGHIMLTDFDLSLQSTTSPSLDGD                    TDTDDEASGGASCFPDHLLRFKRRRNAVAAPRPRFVAEPVDARSCSFVGTHEYVAPEV                    ASGGAHGAAVDWWAYGVFLYELIYGRTPFAGATNEATLRNIVRRPLAFPSGSGSCGPA                    DADARDLIARLLAKDPAARLGSRRGAADVKSHPFFKSLNLALLRSSRPPVVPGAGAGA                    APLHRSQSCKAAPTTPPPPTTTKPANATARFDLF</aaseq>|
+
==References==
DNA = <dnaseqindica>91..1545#acttcaccaccgcacagcgagctcgccgcggagagctttcgccggagaggtagacgacgacggcgacgacagtgtcacgtgctcacgttcatggtggcggcggtgcgcgcgccggtgaagccggagatggtggagctctcgccggcggcgatggagaggtactcctccgacgccgacacgacggcgccgaactcgagccttagctcggcggcgagcagcacggggagcctcgcgcggtgctcgagcctgtcgcgcctgtcgttcgactgctcgccgtcggccgccgtggcggcggcggcgacgtcgtgctcgccgccgcgggcgtcggtgctgttgcggccgcacaggtccggcgacgtcgcgtgggcggccatccgcgcggcttcgacgacctccgcggcgccgctaggcccgcgggacttcaagctcgtgcggcgcatcggcggcggcgacatcgggacggtgtacctgtgccgcctccggagctcgccggagagggagagcccgtgcatgtacgcgatgaaggtggtggaccggagggcggtggcgaggaagcagaagctggggcgcgcggcggcggagaagcggatcctgcggcagctggaccaccccttcctccccaccctcttcgccgacttcgacgccacgccgcacttctcctgcgccgtcatggagttctgccccggcggcgacctccactccctccgccaccgcatgccgtcccgccgcttcccgctcccctccgcccgcttctacgccgccgaggtgctcctcgccatcgagtacctccacatgatgggcatcgtctaccgcgacctcaagcccgagaacgtcctcatccgcgccgacggccacatcatgctcaccgacttcgacctctcgctgcagtccaccacctcgccgtctctcgacggcgacaccgacaccgacgacgaggccagcggtggcgcgtcctgcttcccggaccacctcctccggttcaagcggcggcggaacgccgtggcggcgccgcgtccgcggttcgtggcggagccggtggatgcgaggtcgtgctcgttcgtggggacgcacgagtacgtggcccccgaggtggcgagcggcggcgcgcatggcgcggccgtggactggtgggcgtacggggtgttcctctacgagctcatctacggccgtacgccgttcgccggcgctacaaacgaggcgacgctccgcaacatcgtccgccgcccgctcgccttcccctccggctccggctcgtgcggtcccgccgacgccgacgcgcgcgacctcatcgcccgcctcctcgccaaggaccccgccgcccgcctcggctcccgccgcggcgccgccgacgtcaagtcccaccccttcttcaagtccctcaacctcgccctcctccgttcgtcgcgcccgcccgtcgtccccggcgccggcgccggcgccgcgccgctacaccggtcgcagtcgtgcaaggcggcgccgacaacgccgccgccgccgacgacgacgaagccggcgaacgccaccgcgcggttcgacctcttctgagcatattgaccgttgctgtctgctactacctacccgcgtcgtcgccgacatcgccggcgggagacacgctccggccaccgtgacattaatttctcgttgacccttagctaccgcgttgaatgtacacactgttaattaattactactcctagttaatcactgctaatcaccttgctgttagtactactaaactaatataatctagtggcttaatt</dnaseqindica>|
+
<references>
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001073800.1 RefSeq:Os12g0614600]|
+
* <ref name="ref1">
}}
+
Morita Y, Kyozuka J. Characterization of OsPID, the rice ortholog of PINOID,
[[Category:Genes]]
+
and its possible involvement in the control of polar auxin transport. Plant Cell
[[Category:Japonica mRNA]]
+
Physiol. 2007 Mar;48(3):540-9. PubMed PMID: 17303594.
[[Category:Oryza Sativa Japonica Group]]
+
</ref>
[[Category:Japonica Genes]]
+
</references>
[[Category:Japonica Chromosome 12]]
+
 
[[Category:Chromosome 12]]
+
==Structured Information==
 +
    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 12]]

Latest revision as of 15:40, 14 February 2017

The rice Os12g0614600 was reported as OsPID in 2007 [1] by researchers from Japan.

Annotated Information

Figure 4. Phenotypes of OsPID overexpression.[1].

Gene Symbol

  • Os12g0614600 <=> bif2,Osbif2,OsBIF2,OsPID

Function

  • PINOID, is a serine threonine protein kinase in Arabidopsis, controls auxin distribution through a positive control of subcellular localization of PIN auxin efflux carriers.
  • The rice OsPID probably plays a role in the pattern formation and organogenesis in the rice shoot.

Phenotypic analysis

  • Constitutive overexpression of OsPID caused a variety of abnormalities, such as delay of adventitious root development, curled growth of shoots and agravitropism. Abnormalities observed in the plants that overexpress OsPID could be phenocopied by treatment with an inhibitor of active polar transport of auxin, indicating that OsPID could be involved in the control of polar auxin transport in rice.

Evolution

  • Phylogenetic analysis showed that the rice genome contains a single PID ortholog, OsPID.

You can also add sub-section(s) at will.

Labs working on this gene

  • Graduate School of Agriculture and Life Sciences, University of Tokyo, Yayoi, Bunkyo, Tokyo, 113-0032 Japan

References

  1. 1.0 1.1 Morita Y, Kyozuka J. Characterization of OsPID, the rice ortholog of PINOID, and its possible involvement in the control of polar auxin transport. Plant Cell Physiol. 2007 Mar;48(3):540-9. PubMed PMID: 17303594.

Structured Information