Difference between revisions of "Os10g0569400"

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Please input one-sentence summary here.
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The rice '''''Os10g0569400''''' was reported as '''''Rir1b''''' in 2000 <ref name="ref1" /> by researchers from Switzerland.  
  
 
==Annotated Information==
 
==Annotated Information==
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===Gene Symbol===
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*'''''Os10g0569400''''' '''<=>''' '''''Rir1b,OsRir1b'''''
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===Function===
 
===Function===
Please input function information here.
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* The '''''Rir1b''''' gene of rice (Oryza sativa) is one of a set of putative defense genes whose transcripts accumulate upon inoculation of rice with the non-host pathogen Pseudomonas syringae pv. syringae. It belongs to a family of genes encoding small extracellular proteins so far only identified in cereals.
 
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* Over-expression of the Rir1b gene confers partial resistance against Magnaporthe grisea.
===Expression===
 
Please input expression information here.
 
 
 
===Evolution===
 
Please input evolution information here.
 
  
 
You can also add sub-section(s) at will.
 
You can also add sub-section(s) at will.
  
 
==Labs working on this gene==
 
==Labs working on this gene==
Please input related labs here.
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* Institute of Plant Biology, University of Zurich, Zollikerstrasse 107, 8008 Zurich, Switzerland
  
 
==References==
 
==References==
Please input cited references here.
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<references>
 
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* <ref name="ref1">
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Schaffrath U, Mauch F, Freydl E, Schweizer P, Dudler R. Constitutive
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expression of the defense-related Rir1b gene in transgenic rice plants confers
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enhanced resistance to the rice blast fungus Magnaporthe grisea. Plant Mol Biol.  
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2000 May;43(1):59-66. PubMed PMID: 10949374.
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</ref>
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</references>
 
==Structured Information==
 
==Structured Information==
{{JaponicaGene|
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[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 10]]
GeneName = Os10g0569400|
 
Description = RIR1a protein precursor|
 
Version = NM_001071980.1 GI:115483555 GeneID:4349448|
 
Length = 1320 bp|
 
Definition = Oryza sativa Japonica Group Os10g0569400, complete gene.|
 
Source = Oryza sativa Japonica Group
 
 
 
  ORGANISM  Oryza sativa Japonica Group
 
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
 
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
 
            clade; Ehrhartoideae; Oryzeae; Oryza.
 
|
 
Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|
 
AP = Chromosome 10:23030488..23031807|
 
CDS = 23030527..23030653,23031343..23031539|
 
GCID = <gbrowseImage1>
 
name=NC_008403:23030488..23031807
 
source=RiceChromosome10
 
preset=GeneLocation
 
</gbrowseImage1>|
 
GSID = <gbrowseImage2>
 
name=NC_008403:23030488..23031807
 
source=RiceChromosome10
 
preset=GeneLocation
 
</gbrowseImage2>|
 
CDNA = <cdnaseq>atgatgaggaagcaaagccgctctccttgttcatcttcttcttctgctgctgttgtgtccctctgcaaggtgctcctgttggtcctggctctcatctgcaccctggaaactgtctcagtagaaggagggagagtggcagcagcagcattagttggtgggggcgtaccactgaatccacggtacccggcgattcctgaagaaccttacataggccggagaggcgatccgtacacaggtcggggaggcgaaccttacacacgcccgggacggggatgcaccgttgcatacggatgctatggaggtcctccagctgccaaaccatga</cdnaseq>|
 
AA = <aaseq>MMRKQSRSPCSSSSSAAVVSLCKVLLLVLALICTLETVSVEGGR                    VAAAALVGGGVPLNPRYPAIPEEPYIGRRGDPYTGRGGEPYTRPGRGCTVAYGCYGGP                    PAAKP</aaseq>|
 
DNA = <dnaseqindica>40..166#856..1052#acacaacaaacaaaccaagagctaaaatttcagtcagtgatgatgaggaagcaaagccgctctccttgttcatcttcttcttctgctgctgttgtgtccctctgcaaggtgctcctgttggtcctggctctcatctgcaccctggaaactgtctcagtagaaggaggtaaatacttcctctgtctcacaaaaaataactacaatacacgaatctgaacaaacattcatccaatccaagtttaccctcagaaattggcttttatgggacagaagatgcacatatttaaactcataatcattgagagttaatcaattactctctctggttatgttttggataagattgtagtcaaacttttataactttaattatcaaaattttaaaagtatttagtttaaaagaactagaccaacatatatgtatttgtcgttcaaagttctataataaaaataaacatgtatttatttattctatatattataatagaaaaacaagatcaaagatatattttgaagactgtgttattgtctaaaacgtcaagaattataaaaccgaaggaagtactaaggctgtgttggaggaggagatagagaagattgagaagatacgtaaaacgaggtgagccatttagcacatgattaattaaatattagctattttaaactttaaaaatggattaatatgattttctaaagcaacttttctgtaaaaactttttgcaaaaaatacaccgtttagtagtttgggaagcgtgcgtacggaaaacgaaacaaacaatctccctatcaccccagaacgaacgcagcctaagttacttggttggttaactaaatttggtatctggatggatgcagggagagtggcagcagcagcattagttggtgggggcgtaccactgaatccacggtacccggcgattcctgaagaaccttacataggccggagaggcgatccgtacacaggtcggggaggcgaaccttacacacgcccgggacggggatgcaccgttgcatacggatgctatggaggtcctccagctgccaaaccatgacgatcgacatactactctgctactgctactgcatgctcgcttgttatttcgatcgatcaatctcatggcctgcgtagctcaccacataaacaaataaaaactatgcatctaataattaacccctgatctatcgatcgatcagtagacgggtatgcatcaatcggcatcagcagcatatgcgatgtgaattgtgatgtatgcatggtgtatttttgtggtaaataaagtgaagcagatatctatctagtatatacacatcgttcctgct</dnaseqindica>|
 
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071980.1 RefSeq:Os10g0569400]|
 
}}
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Oryza Sativa Japonica Group]]
 
[[Category:Japonica Genes]]
 
[[Category:Japonica Chromosome 10]]
 
[[Category:Chromosome 10]]
 

Latest revision as of 16:16, 14 February 2017

The rice Os10g0569400 was reported as Rir1b in 2000 [1] by researchers from Switzerland.

Annotated Information

Gene Symbol

  • Os10g0569400 <=> Rir1b,OsRir1b

Function

  • The Rir1b gene of rice (Oryza sativa) is one of a set of putative defense genes whose transcripts accumulate upon inoculation of rice with the non-host pathogen Pseudomonas syringae pv. syringae. It belongs to a family of genes encoding small extracellular proteins so far only identified in cereals.
  • Over-expression of the Rir1b gene confers partial resistance against Magnaporthe grisea.

You can also add sub-section(s) at will.

Labs working on this gene

  • Institute of Plant Biology, University of Zurich, Zollikerstrasse 107, 8008 Zurich, Switzerland

References

  1. Schaffrath U, Mauch F, Freydl E, Schweizer P, Dudler R. Constitutive expression of the defense-related Rir1b gene in transgenic rice plants confers enhanced resistance to the rice blast fungus Magnaporthe grisea. Plant Mol Biol. 2000 May;43(1):59-66. PubMed PMID: 10949374.

Structured Information