Difference between revisions of "Os10g0569400"

From RiceWiki
Jump to: navigation, search
(Created page with "{{JaponicaGene| GeneName = Os10g0569400| Description = RIR1a protein precursor| Version = NM_001071980.1 GI:115483555 GeneID:4349448| Length = 1320 bp| Definition = Oryza...")
 
 
(2 intermediate revisions by 2 users not shown)
Line 1: Line 1:
{{JaponicaGene|
+
The rice '''''Os10g0569400''''' was reported as '''''Rir1b''''' in 2000 <ref name="ref1" /> by researchers from Switzerland.  
GeneName = Os10g0569400|
 
Description = RIR1a protein precursor|
 
Version = NM_001071980.1 GI:115483555 GeneID:4349448|
 
Length = 1320 bp|
 
Definition = Oryza sativa Japonica Group Os10g0569400, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
+
==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
+
===Gene Symbol===
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
+
*'''''Os10g0569400''''' '''<=>''' '''''Rir1b,OsRir1b'''''
            clade; Ehrhartoideae; Oryzeae; Oryza.
+
 
|
+
===Function===
Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|
+
* The '''''Rir1b''''' gene of rice (Oryza sativa) is one of a set of putative defense genes whose transcripts accumulate upon inoculation of rice with the non-host pathogen Pseudomonas syringae pv. syringae. It belongs to a family of genes encoding small extracellular proteins so far only identified in cereals.
AP = Chromosome 10:23030488..23031807|
+
* Over-expression of the Rir1b gene confers partial resistance against Magnaporthe grisea.
CDS = 23030527..23030653,23031343..23031539|
+
 
GCID = <gbrowseImage1>
+
You can also add sub-section(s) at will.
name=NC_008403:23030488..23031807
+
 
source=RiceChromosome10
+
==Labs working on this gene==
preset=GeneLocation
+
* Institute of Plant Biology, University of Zurich, Zollikerstrasse 107, 8008 Zurich, Switzerland
</gbrowseImage1>|
+
 
GSID = <gbrowseImage2>
+
==References==
name=NC_008403:23030488..23031807
+
<references>
source=RiceChromosome10
+
* <ref name="ref1">
preset=GeneLocation
+
Schaffrath U, Mauch F, Freydl E, Schweizer P, Dudler R. Constitutive
</gbrowseImage2>|
+
expression of the defense-related Rir1b gene in transgenic rice plants confers
CDNA = <cdnaseq>atgatgaggaagcaaagccgctctccttgttcatcttcttcttctgctgctgttgtgtccctctgcaaggtgctcctgttggtcctggctctcatctgcaccctggaaactgtctcagtagaaggagggagagtggcagcagcagcattagttggtgggggcgtaccactgaatccacggtacccggcgattcctgaagaaccttacataggccggagaggcgatccgtacacaggtcggggaggcgaaccttacacacgcccgggacggggatgcaccgttgcatacggatgctatggaggtcctccagctgccaaaccatga</cdnaseq>|
+
enhanced resistance to the rice blast fungus Magnaporthe grisea. Plant Mol Biol.  
AA = <aaseq>MMRKQSRSPCSSSSSAAVVSLCKVLLLVLALICTLETVSVEGGR                    VAAAALVGGGVPLNPRYPAIPEEPYIGRRGDPYTGRGGEPYTRPGRGCTVAYGCYGGP                    PAAKP</aaseq>|
+
2000 May;43(1):59-66. PubMed PMID: 10949374.
DNA = <dnaseqindica>40..166#856..1052#acacaacaaacaaaccaagagctaaaatttcagtcagtgatgatgaggaagcaaagccgctctccttgttcatcttcttcttctgctgctgttgtgtccctctgcaaggtgctcctgttggtcctggctctcatctgcaccctggaaactgtctcagtagaaggaggtaaatacttcctctgtctcacaaaaaataactacaatacacgaatctgaacaaacattcatccaatccaagtttaccctcagaaattggcttttatgggacagaagatgcacatatttaaactcataatcattgagagttaatcaattactctctctggttatgttttggataagattgtagtcaaacttttataactttaattatcaaaattttaaaagtatttagtttaaaagaactagaccaacatatatgtatttgtcgttcaaagttctataataaaaataaacatgtatttatttattctatatattataatagaaaaacaagatcaaagatatattttgaagactgtgttattgtctaaaacgtcaagaattataaaaccgaaggaagtactaaggctgtgttggaggaggagatagagaagattgagaagatacgtaaaacgaggtgagccatttagcacatgattaattaaatattagctattttaaactttaaaaatggattaatatgattttctaaagcaacttttctgtaaaaactttttgcaaaaaatacaccgtttagtagtttgggaagcgtgcgtacggaaaacgaaacaaacaatctccctatcaccccagaacgaacgcagcctaagttacttggttggttaactaaatttggtatctggatggatgcagggagagtggcagcagcagcattagttggtgggggcgtaccactgaatccacggtacccggcgattcctgaagaaccttacataggccggagaggcgatccgtacacaggtcggggaggcgaaccttacacacgcccgggacggggatgcaccgttgcatacggatgctatggaggtcctccagctgccaaaccatgacgatcgacatactactctgctactgctactgcatgctcgcttgttatttcgatcgatcaatctcatggcctgcgtagctcaccacataaacaaataaaaactatgcatctaataattaacccctgatctatcgatcgatcagtagacgggtatgcatcaatcggcatcagcagcatatgcgatgtgaattgtgatgtatgcatggtgtatttttgtggtaaataaagtgaagcagatatctatctagtatatacacatcgttcctgct</dnaseqindica>|
+
</ref>
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071980.1 RefSeq:Os10g0569400]|
+
</references>
}}
+
==Structured Information==
[[Category:Genes]]
+
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 10]]
[[Category:Japonica mRNA]]
 
[[Category:Oryza Sativa Japonica Group]]
 
[[Category:Japonica Genes]]
 
[[Category:Japonica Chromosome 10]]
 
[[Category:Chromosome 10]]
 

Latest revision as of 16:16, 14 February 2017

The rice Os10g0569400 was reported as Rir1b in 2000 [1] by researchers from Switzerland.

Annotated Information

Gene Symbol

  • Os10g0569400 <=> Rir1b,OsRir1b

Function

  • The Rir1b gene of rice (Oryza sativa) is one of a set of putative defense genes whose transcripts accumulate upon inoculation of rice with the non-host pathogen Pseudomonas syringae pv. syringae. It belongs to a family of genes encoding small extracellular proteins so far only identified in cereals.
  • Over-expression of the Rir1b gene confers partial resistance against Magnaporthe grisea.

You can also add sub-section(s) at will.

Labs working on this gene

  • Institute of Plant Biology, University of Zurich, Zollikerstrasse 107, 8008 Zurich, Switzerland

References

  1. Schaffrath U, Mauch F, Freydl E, Schweizer P, Dudler R. Constitutive expression of the defense-related Rir1b gene in transgenic rice plants confers enhanced resistance to the rice blast fungus Magnaporthe grisea. Plant Mol Biol. 2000 May;43(1):59-66. PubMed PMID: 10949374.

Structured Information