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| − | Please input one-sentence summary here.
| + | The rice '''''Os10g0536100''''' was reported as '''''OsMADS56''''' in 2009 <ref name="ref1" /> by researchers from Korea. |
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| | ==Annotated Information== | | ==Annotated Information== |
| − | ===Function===
| + | [[File:fig2a.jpg|right|thumb|327px|'''Figure 2.''' ''Gene structure of Os10g0536100 .<ref name="ref1" />.'']] |
| − | OsMADS50 and OsMADS56 , which is highly homologous to Arabidopsis SOC1, are affected by the circadian clock. Under long days, OsMADS50 serves as a flowering activator by controlling various floral regulators such as OsMADS1, OsMADS14, OsMADS15, OsMADS18 and Hd3a. But OsMADS50 and OsMADS56 function
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| − | antagonistically in regulating LD-dependent flowering by controlling expression of OsLFL1 and Ehd1. MATERIALS. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and OsMADS56 form a complex that regulates downstream target genes in order to regulate the Rice's flowering time.
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| − | == interference ==
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| − | In those Ehd1-RNAi plants, mRNA levels of both OsMADS56 and OsMADS50 were unchanged,indicating that OsMADS50 and OsMADS56 are upstream of Ehd1.Transcript levels of OsMADS56 were not altered in OsID1-RNAi plants , indicating that OsMADS56 is not hypostatic to OsID1. The level of Hd1 transcript was not affected in osmads50mutant and 56OX transgenic plants. T-DNA insertional knockdown plants for Hd1 reveals that mRNA levels of these two MADS genes in the mutants were unaltered under both SD and LD conditions,thus the LD-flowering pathway mediated by these two MADS genes is independent of Hd1.
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| − | ===Expression=== | + | ===Gene Symbol=== |
| − | (1)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage
| + | *'''''Os10g0536100''''' '''''<=>''''' '''''OsMADS56''''','''''MADS56,RMADS214''''' |
| − | but gradually increased to a maximum at 4 weeks after
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| − | germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)
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| − | (2)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)
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| − | (3)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators
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| − | such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms.(fig9) The transcript levels of
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| − | them is similar to that of Ehd1.
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| − | (4)OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein.[[File:f3b-f.jpg]][[File:fig9.jpg]]
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| − | ===Evolution=== | + | ===Function=== |
| − | Please input evolution information here.
| + | * '''''OsMADS50''''' and '''''OsMADS56''''' may form a complex that regulates down- stream target genes. |
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| | + | ===Phenotypic analysis=== |
| | + | * Overexpression of OsMADS56 (56OX) resulted in delayed flowering under LD. |
| | + | * In the osmads50 mutants and 56OX transgenic plants, transcripts of Ehd1, Hd3a and RFT1 were reduced, although that of OsLFL1 increased. |
| | + | * On the other hand, mRNA levels of OsGI, Hd1, OsId1, OsDof12, Ghd7, Hd6 and SE5 were unchanged. |
| | + | * These observations imply that OsMADS50 and OsMADS56 function antagonistically through OsLFL1-Ehd1 in regulating LD-dependent flowering. |
| | + | * Yeast two-hybrid and co-immunoprecipitation analyses indicated an interaction between those two proteins as well as their formation of homodimers. |
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| | You can also add sub-section(s) at will. | | You can also add sub-section(s) at will. |
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| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | Please input related labs here.
| + | * CHOONG-HWAN RYU1 ,Department of Life Science and Functional Genomic Center, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea |
| | + | |
| | + | * SOON JU PARK2&CHANG-DEOK HAN, Division of Applied Life Science (BK21 Program), Plant Molecular Biology and Biotechnology Research Center (PMBBRC), Gyeongsang National University, Jinju 660-701, Korea |
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| | ==References== | | ==References== |
| − | 1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell & Environment, 2009, 32(10): 1412-1427
| + | <references> |
| − | 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12
| + | * <ref name="ref1"> |
| − | 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. & Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical & Biophysical Research Communications 360, 251–256.
| + | Ryu CH, Lee S, Cho LH, Kim SL, Lee YS, Choi SC, Jeong HJ, Yi J, Park SJ, Han |
| − | 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. & Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.
| + | CD, An G. OsMADS50 and OsMADS56 function antagonistically in regulating long day |
| | + | (LD)-dependent flowering in rice. Plant Cell Environ. 2009 Oct;32(10):1412-27. |
| | + | doi: 10.1111/j.1365-3040.2009.02008.x. PubMed PMID: 19558411. |
| | + | |
| | + | </ref> |
| | + | </references> |
| | | | |
| − | ==Structured Information==
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| − | {{JaponicaGene|
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| − | GeneName = Os10g0536100|
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| − | Description = Transcription factor MADS56|
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| − | Version = NM_001071703.1 GI:115483149 GeneID:4349237|
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| − | Length = 10441 bp|
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| − | Definition = Oryza sativa Japonica Group Os10g0536100, complete gene.|
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| − | Source = Oryza sativa Japonica Group
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| − | ORGANISM Oryza sativa Japonica Group
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| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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| − | clade; Ehrhartoideae; Oryzeae; Oryza.
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| − | |
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| − | Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|
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| − | AP = Chromosome 10:21318476..21328916|
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| − | CDS = 21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944<br>,21328060..21328101,21328414..21328517,21328527..21328605|
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| − | GCID = <gbrowseImage1>
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| − | name=NC_008403:21318476..21328916
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| − | source=RiceChromosome10
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| − | preset=GeneLocation
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| − | </gbrowseImage1>|
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| − | GSID = <gbrowseImage2>
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| − | name=NC_008403:21318476..21328916
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| − | source=RiceChromosome10
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| − | preset=GeneLocation
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| − | </gbrowseImage2>|
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| − | CDNA = <cdnaseq>atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga</cdnaseq>|
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| − | AA = <aaseq>MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG</aaseq>|
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| − | DNA = <dnaseqindica>386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtggttcag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ccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc</dnaseqindica>|
| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071703.1 RefSeq:Os10g0536100]|
| |
| − | }}
| |
| | [[Category:Genes]] | | [[Category:Genes]] |
| | [[Category:Japonica mRNA]] | | [[Category:Japonica mRNA]] |
| Line 70: |
Line 42: |
| | [[Category:Japonica Chromosome 10]] | | [[Category:Japonica Chromosome 10]] |
| | [[Category:Chromosome 10]] | | [[Category:Chromosome 10]] |
| | + | |
| | + | ==Structured Information== |
