Difference between revisions of "Os03g0239400"

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(Created page with "{{JaponicaGene| GeneName = Os03g0239400| Description = Similar to Transcription factor HBP-1a(C14)| Version = NM_001056041.1 GI:115451810 GeneID:4332201| Length = 11523 bp...")
 
 
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{{JaponicaGene|
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The rice '''''Os03g0239400''''' was reported as '''''OsbZIP26''''' in 2008 <ref name="ref1" /> by researchers from India.  
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GeneName = Os03g0239400|
 
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Description = Similar to Transcription factor HBP-1a(C14)|
 
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Version = NM_001056041.1 GI:115451810 GeneID:4332201|
 
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Length = 11523 bp|
 
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Definition = Oryza sativa Japonica Group Os03g0239400, complete gene.|
 
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Source = Oryza sativa Japonica Group
 
  
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  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
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            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Gene Symbol===
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            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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*'''''Os03g0239400''''' '''<=>''' '''''OsbZIP26,OsbZIP, bZIP26'''''
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            clade; Ehrhartoideae; Oryzeae; Oryza.
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===Function===
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|
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* The basic leucine (Leu) zipper (bZIP) proteins compose a family of transcriptional regulators present exclusively in eukaryotes.
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Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
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* The '''''OsbZIP''''' proteins characteristically harbor a bZIP domain composed of two structural features: a DNA-binding basic region and the Leu zipper dimerization region.  
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AP = Chromosome 3:7407417..7418939|
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* bZIP proteins have been shown to regulate diverse plant-specific phenomena, including seed maturation and germination, floral induction and development, and photomorphogenesis, and are also involved in stress and hormone signaling.
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CDS = 7407925..7407981,7408248..7408373,7409577..7409654,7409749..7410011,7410532..7410574<br>,7411414..7411465,7411538..7411704,7411968..7412027,7412124..7412207<br>,7412487..7412591,7412673..7412732,7412809..7412865|
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GCID = <gbrowseImage1>
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===Expression===
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name=NC_008396:7407417..7418939
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* The researchers from India find specific or coexpression patterns of rice bZIP transcription factors starting from floral transition to various stages of panicle and seed development.
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source=RiceChromosome03
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* bZIP transcription factor-encoding genes in rice also displayed differential expression patterns in rice seedlings in response to abiotic stress and light irradiation.
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preset=GeneLocation
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</gbrowseImage1>|
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===Evolution===
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GSID = <gbrowseImage2>
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* The phylogenetic relationship among rice bZIP domains as well as with bZIP domains from other plant bZIP factors suggests that homologous bZIP domains exist in plants.  
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name=NC_008396:7407417..7418939
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* Similar intron/exon structural patterns were observed in the basic and hinge regions of their bZIP domains.  
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source=RiceChromosome03
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* Detailed sequence analysis has been done to identify additional conserved motifs outside the bZIP domain and to predict their DNA-binding site specificity as well as dimerization properties, which has helped classify them into different groups and subfamilies, respectively.
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preset=GeneLocation
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<br>
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</gbrowseImage2>|
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'''''You can also add sub-section(s) at will.'''''
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CDNA = <cdnaseq>atgggaaaaggagaggtagccactaggtccaaatctcaaaaatcatcggcgacacagaatgaacagagtacacccactaatcctcctactgcatatccggactggtctcaatttcaggcatactataatcctgctgggacagctccaatgaccccaccgggctttttccatccaaatgtggctccaagtcctcaggggcacccatatatgtggggtccacagatgatgcctccctatggaacaccgccgccatatgcggcgatgtatgcgcaagggacaccatatcagcaggcacctatgctaccgggttcacacccatacaatccttatcccgggcaatcaccaaatgggacagttcaaactcctacatctgctggcggaacagagacagataagtcaggcaaaagtaagcggaagactcccctgaagagatcgaaaggaagcttaggtaatcttgatgtagttgcaacaaaaaataaaaaggcgcccgcaaaaccttcagcatcctcatccaatgaaggttcttcacacagtgagagcggaagtggaagttcttctgaaggaagcagtacaaattcaaaaagtggttcaaggacaaaggatggttctgagcatggccagggtaatgatgctagcaacaaaggagctactgctcagagttctgcggttgagcccgtacaagcatctactgggccagttgtgcttaaccctatgatgccatactggcctgtccctcctcccatggctggcccagcaactggtgtaaacatgggaatggattactggggtactcctacttcagtacccatgcataataaagttattgcagcaccagcatcagctccttcatcaaactctcgtgatgttgttctcagtgatccagccatacaggatgagcgagaactgaagagacaaaagcggaagcaatcaaatagggaatcagctcgacgttcaagattacgcaagcaggctgaatgggaggaagtagccaatcgagctgatttgctaaagcaggaaaacagctcacttaaggaagaattgaaacaacttcaggagaagtgcaatagcttgacctcagaaaatacaactttacatgaaaagcttaaagagcttgaaggcgagaaatcaaatggaaactggtataaagagtga</cdnaseq>|
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−
AA = <aaseq>MGKGEVATRSKSQKSSATQNEQSTPTNPPTAYPDWSQFQAYYNP                    AGTAPMTPPGFFHPNVAPSPQGHPYMWGPQMMPPYGTPPPYAAMYAQGTPYQQAPMLP                    GSHPYNPYPGQSPNGTVQTPTSAGGTETDKSGKSKRKTPLKRSKGSLGNLDVVATKNK                    KAPAKPSASSSNEGSSHSESGSGSSSEGSSTNSKSGSRTKDGSEHGQGNDASNKGATA                    QSSAVEPVQASTGPVVLNPMMPYWPVPPPMAGPATGVNMGMDYWGTPTSVPMHNKVIA                    APASAPSSNSRDVVLSDPAIQDERELKRQKRKQSNRESARRSRLRKQAEWEEVANRAD                    LLKQENSSLKEELKQLQEKCNSLTSENTTLHEKLKELEGEKSNGNWYKE</aaseq>|
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==Labs working on this gene==
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DNA = <dnaseqindica>10959..11015#10567..10692#9286..9363#8929..9191#8366..8408#7475..7526#7236..7402#6913..6972#6733..6816#6349..6453#6208..6267#6075..6131#gtttttccccttcacaatcagagcgaaatcgagagagagggcggcggcggcgacttcgtgcgcaagagggaggcggcggcgacttcgtgcgcaagagggcgtgccacgggccagcgacgccagtgtcctcccttctccatcctccttcctctcatccctcctcccgccgatccctttcccttctccatcctccttcctctcatccgccgccgcgccggctcgtggctgagctgctcctgcacctcctcctcccagtcccgcgcccgcagctcccgcctctccccccgcttcttccgcctctcccgccctgtcagctccccctcacctccatagccaaggtaaggaaaccctagcagtgtgtaccatctctgatattttgtttataatgctagatctgcgcgattccgtttgcatgatatgaatgtccttgctgtcaacatctgttcaagcacactgcaatattttcgtttatcaattattacacagtagttattttcctgacgtgaacaagtattactatgtgatttgggcaagtattttttgatgagatgatttatgcttgagcatgacatggcaacgtgtttatttttctttgattgttgtattgtagatggataagaggaccaaggttttaatttttgctgcttctgccaatctattgttgtcaatgatggccatgattattcattctaggaaaagaaagatagtttctaggagggaaggtgttaaatatgacccaatggttgaaagggataggatgagaattgagtatctaaacacaaaaatttggaggaacgataacatgcttagacttagaaaagattctttctttcggttttgtaagctctttagaaatcgtggtttgcttgaagataccatccacatgtctattgaggaacaagtaactatgtttctaaatacagcagggcacaatcttagaaatagataagttggcactaattttgataggtccggagaaacagttagttgttatttcaacaagtgcttcatactgttggtgagctgcgagatgaactaatcaggcctccctcattggacaccccaagtaaaattgccgggaaccctaggtgggatccttactttaaggtgtgagattcatctgtgtctcattttcaattttatattttaacaaacctcaatgtcccctgatcttttatggtgttgaatataaaataggattgtatggagctattgatggcacacatattagagcctctgttcagaagaatatcgagccctcttttcgtggtaggaagtctcatgccacgcaaaatgtaatggcaactatagattttgatcttcggttcacttatgtcttggttggttgggagggtatagcacatgatgctgtagttttaagagatgcattggaacgtgaaaatggccttataccccaaggtaatagattaatttagttcatcaatttctccatctcaatagaaatgtgaccaacttgtccatcatatgataggaaaattctacctagttgatgctggatatggagccaaaccaggattcctccctccatttgtccggtaccacttgaatgagtgggggaataatccggtgcaaaatgaggagttgttcaactttaggcactcgtcccttcgtgtcacagttgaacgtgcatttggggcactaaagaggaggttcaaaattctagatgatgccaccccattctttccttgtccaactcaagtagatattgttgtagcttgttgcattattcataattgggtcatgaatgatggaattgatcagtatattacagatccattagatttgataagtgaacccacaaaagagtcatttgggtaggcaacagagccatctacgtttaaaaagtttggctagttgcattcttcgatggtgtctgtcccataaaggatgggtgctaagtttataaattttcttaggcataattaaattcccacaaattggataaattgaagtcatatgtccactgtcacccagacgattaaaccactcaagcattcatacaagtaaaaacaaatattaagtattgtaatgacgacgttttctgaagtgatagtagcatcaaacggatatgcatcaaaagaaaaccaacataagaaagataggaggcacataaaaaatgccaaacccacggatcctccacagcaattccatattctaaatcctcaaatcgcgccacggggacatcgagcagatctacccagaaccctcgccggcttagaattcacgaccggattcggattccaccgcccgcacgagcgaaaaaaaagaccagaaacaaatcgagagcttaagtcacacggtttactgggagggagggaggtcgaggcgctcgcgacggatctccactccacgccaatccagcagaggctgggcggcggcgagaggggaagcgcctcgaggtggcgccgcttgctccagcgggaggctgcccccgggttggggagcacttggatttgcgaaatttgggggaggtgtggcgagggagggagggaggtagaggcgctcgcgatggatcttcactctgcgccaatccaacagaggcggggcgacgacgagaggggaagcgccccgaggcggcgccgcttgctccagcgggaggctgcccccaggttggggagcacttggatttgcgaaatttgggggaggcatggcgcatgagaaagagagaggagaggaaaaaagttggtctaaaggcgtactccaatcacgagttcacgtagtccggaaggtgacctcctgagagagagggcgaataaaaaaacaagaagaagagcagctaagacaagtgtgtggtttgttggttgtgtgtgggcctggagaaaaagaatgcctggcccattacagaccgattccgcttccggctacagtaccatactaccatgtgctccaattggcacaatactaagctttttctttgcaattaaaaaaggacaactttttaaatccaaaattttcacatttaaaaattttggatttacgaatagatctaagtatatattttttagtttactttatcaaacaacgaaagtgatgaacccctacatacccctacaaataattaatttttaaaaaggcatgtttagtttcaagtcacctgaaaatacataaatctcggtcttttttagaccgtcaagatttcatccaaattcatgtggactttttctctcccccttatatcttctcttctatcgaaaggatggatgcacacaagcacggaacttatgtttggtttggggacctggtgggatgggttaggtccattaagggggagagaaaaagtccacatgaatttggatgaaatcttgacggtataaaaaagactgagatttgtgtattttcaagtgacttgaaactaaacatgcctttttaaaaattaataatttgtaggggtatgtaggggttcttcatcactttcgctgttcgcttaagtaaactaataaaaatatacagagctattcgtaaatccaaaatttttaaatgtgaaaattttggttttaaaaagttgtcatttttaattgcaaagagaaagcttctatactgtgccaatcggagcacatggtagtatggtactgtaaccagaagcgggctcgggctttaatgggttgggcatttttttctccaggcccacacaaccaacaaaccacacacttgtcttagccgctcttcttctttttttttattcaccctctctcaggaggtcaccttcccgacgacgtgaactcgtgatttgagtgtgccttcagaccaatttttttcctctctctctttctcatgcgccacgcctcccccgaatttcccaaatccaagcgctccccaacctgggggcagcctcccgctggagcaagcggccgcctcagggcacttcccctctcaccgccgccccgctctgctggattggcgcggagcagagatccatcgtgagcgcctctacctccctccctcccagtaagccgtgtgacttaagcttctagtcttcttttcgcccgcgcgggcggtggaatccgaatccagtcgcgagttctgagccggcgagggtgctgggtagatctactcagtgtccccgtgacgcgatttgaggatttagaatgtggaattgccgtggaggatccgtgggtttggcgcttttttttttgcctcctgtctttcttatgttgtttttttttctgatgcatatctgtttgatgctacatcacttcagaaaacgtcgtcattacaatacttaatatttgtttttccttgtacgaatgcctcagtggtgtaatcacgtgggcgacggtggaaatcaatttatccagtttgtgggaatttaattatgcctgagaaaatttataaactaagcacccatcctttatgggacagacaccatcgaagaatgtaactagccaaactttttaaacgtagatcaccaatacggacacaagtattttgattaccacttaagtttactacggagtaccatgttactggaaaactactgttagagaagtgtgtcggaaaccgtgtcaaaatctgagataccattattcatgcatatggaaaataattatggagtggccaaacccctaatgctggggttcagtcccgtgtcatggctagttggctacacggtcctgtgctcccaccactaaaaactaagcccagttctgctggcatacagatagactcatcctataaactcttaatcaactgaaatatttctacacctggctgcctgaaggttttagtggattgtcgtcaagcatgaaatatctatttcttgataatttgtgtggtgcattaaagcagcacgcattccttacctaaatgcctttttgttgacacaaaagcatccctgattgcaatacgtgaatagccatagcctttttacaacaaaggcactaattatctaattctaatagagtattgtccaactggggcataaagatttaactaagtaataagaatgcttgtgatatgtttttctagcagtctttttttttctttccttttattttctaggaaaaacaggagcataatatgaagcaaaagcattgatccttgtgttaacagctactattaataatagctaatgacaaacaccttaatgcgaggtgcatcttgcctgacgtgttggatgaggatgacgccataagttgctgcttaaaagaacctccatcgtcaattctacccgcatttacttgacatcagcggacagcttgaaattaattaggagtctgattaaaagttaaactactgaagagtttgacaaaatatgctcttaaaattcaccatcttgggggtccttatagaattctgtacctgccaacactcaaggttttaaaagttaaaaagtaaaaatatgtcaaacatggattctcatatcggtaccgtgtgaaacagcccatcgtaattgatggccacgtaattgtgatatgcgcataacgctatcatctgtttgagcactcatggtactatcatatatttgatacacatatctaacttgtctctctcttgtagtcagcttgctgtttagaatattttgattagcattcctttccttgttttattagacaaaagttattaatacaccgtctgatcttcctttgtacttttgttccacagtgctagccaataagaaaattttctgccgcatccatgatacttagagactccactgcttcattgaccaagaaaatatagaagatcaaaggtgtcttgtaggtaggaagcttctgccggttgtttatatattcatcgtttcacctgataattttttttccatgtttgttgggttccgagtgtttttctgcacttgtgtattattctatgctctgataatgattaatagtcatctctcctttcaaaattattttatccatgacacaatttgtttgcttgctgaaatccttttatttttcacttccttaaaggcaaggaagatctaatttaagcgtttcggaaaacattattttaaaaaccattgagacacatgattaatgatcacttcataaatttgtcttattttcagaacttaggtgttaaaaggaatagagtaatctagggaggaataaagcatgggaaaaggagaggtagccactaggtccaaatctcaaaaatcatcggcgacacaggtatgtacaacaatctgaaactacaagactaattactaattagtgaaattctcttaccttgttttgcttgttttagaatgaacagagtacacccactaatcctcctactgcatatccggactggtctcaatttcaggttcataaaatgagttcatcttgcatccatttaactttttccactatattgtttactgtactggttagtatcaatctgtaggcatactataatcctgctgggacagctccaatgaccccaccgggctttttccatccaaatgtggctccaagtcctcaggggcacccatatatgtggggtccacaggtacattcacattaatttcttgctatagatgcagtgttctggtcataccactaccatttctgctgttttatcagaattatgtctagataagtctaagcatgagtgataataagcaaatggtagcatggacctttccgctgcattcatttgagttacccagtccttttaacctttggccttagggttttggtagtttttcttttgtatgaaggatgctgttagctactctgaagctatggaaaatcagttttaacatgtgatgtgaattgctcgtgtcagatgatgcctccctatggaacaccgccgccatatgcggcgatgtatgcgcaagggacaccatatcagcaggcacctatgctaccggtactcactcttacattttacttaatgaaatagtttttgtcatgttatgtgaatagctcttaccaaagaatttcattctaattgtctctataccagggttcacacccatacaatccttatcccgggcaatcaccaaatgggacagttcaaactcctgtaagttcttgggcatcttttatctgctctgtagttgtagaaggcaagaagaatttcatctaatcttttttttttgcttccctgggtcttttagttgtgtccgtttattccagtttcagtgatcttgctgtcaaaattgttgcttatgctatcataatttagctacattttcatgtaaaaattaattggtttgatttgcacctttatttcattacctgtctacttagattagatatgattgtggttgaaaatcatgttgttagacatctgctggcggaacagagacagataagtcaggcaaaagtaagcggaagactcccctgaagagatcgaaaggaagcttaggtaatcttgatgtagttgcaacaaaaaataaaaaggcgcccgcaaaaccttcagcatcctcatccaatgaaggttcttcacacaggtagctccttttcttctgtctctgtgattataatggataaacgctgacttttttttaacatatgatatgcagtgagagcggaagtggaagttcttctgaaggaagcagtacaaattcaaaaagtgtatgtcactctatcataccgctttgttatgttacttcagttacttcatttttctcaccagtacaaattccaaaggcagcatgccttttgttttaccactctggcatcccccccccctactgaaggtcttgtttgtcatgcgcaatatctagagtctaagcctttgtattattgcttacggcacctgtactgaactggtacactatttagaggtgcaagttagttgggtactagggttgcacactggctctgcatattggccatcagaaacccacctagactagttgggttgtacttctcttcaaggttctggatgtttgcaaaataaagatctgcaaagtgcaaatcttgtaataagaggatcccaactgataatgaaacagtctgatttttggtgatactaaaaaaaaatcgaatggtgagcccttctattaaagttcttgaccattcgcatagtcgttagttattagactcgagttgattattctttgctctcgccacatgtgttgtaccctttaataattagtgttgatcgattgttctgaaacccttaggaacttgttttccccaccaaatacttatagtatgtggatcttttttttttttgaaagaatggatcttttttttttgttgcatgcatgtttggtacctttttgtgctgggtgtatccatggttgccactactttcaaaatgcactatagccttctagcctgtgaacaaagtatatggatgcactcaatcctctatgtttttttttttttcctttttgctccttttgcttcatacgatcattttcttgctaacctaagacaaatatgtacaaacaatttgcttgcagggttcaaggacaaaggatggttctgagcatggccagggtaatggtaggattaagaacctctcttttttttatataaaacagtagaattttcaaggaaaatctgtagctcataaaagattctgcaaaaactcatgaatattatagtggtgcaggaggcatgcctgaaaaacattttccgtgttgaaaacacatatggcaaaaatcactgtttagacacaaggtttttaagaaagcaagggcgaggaagtaccatatgcaatcatcatccgttggcatattgggtgtgggtttagatttggattcaaagtggcatatttggtacaagcaaaattttgatgacatattaggaaccgacgaaatttccagtggtatattaggggtttactcctagtatagtactgaacatattctacaacctgccattggtagctttattgaagaataaaattgtgaaactatgcttgtttttgttataagcaattaataaatatattagttaagacaataagaaatttttctcatgtagtaaggattgactgcaatctaattacctttttgtccagatgctagcaacaaaggagctactgctcagagttctgcggttgagcccgtacaagcatctactgggccagttgtgcttaaccctatgatgccatactggcctgtccctcctcccatggctggcccagcaactggtgtaaacatgggaatggattactggggtactcctacttcagtacccatgcataataaagttattgcagcaccagcatcagctccttcatcaaactctcgtgatgttgttctcagtgatccagccatacaggtttattgctgtgcaggatttgtttcttgtttttgctgtgttacaggaaccaaccttgcaatttccttagggctgtattttatttttaatgcaggatgagcgagaactgaagagacaaaagcggaagcaatcaaatagggaatcagctcgacgttcaagattacgcaagcaggtctgtagtttctgcaccagtctgcatggatttggctgtcgtttgctgttcttattatctttgggtagtctgtgtttctgtaaacaactaatccataagaggccaacttggattcaacctaatcagcagtgaattttgataaggttgaacctatttgaattgaccgcagacgggaataatacttaaatatacatagcctgtatggcatgcatgcgcgcatgcacgctatgctagagcccaggatattgatggtgctttaaatgaattttcttttatggatggtttgaccagaatctgaactgaacaatatgtttgaagatattagcttggcagtccattggatcataattcaaagctgattttgaattgtagaggattttcattactcattacccagctctcttttcatgattgctaaagacaagtaaaaaattacccaaattattcttaaaacatcaaactttgaaattcaaactgcttaggattacaacccaattgttgttgaaccagtaccttattagtcgagtgagtataatttaccgcacttcaatgacaatccagtgagtcgcaaaattggcaactacatttttgactggtgtagagagatgttttctaacttcttgagatacatctttaaaatacacactatatttgttttaaaagtcatggatatataagcaagcatgggaaacaacctcccaatacaatattaggttgactgcagatattcttgatcaattctcttttggtgatataagggtggattggttctttttcttcttttttttttttggttctcggcttctcgcatacatatcattgtccatttgttaacttaagaatgtatggttcgtcttagggttctcagcttgttgtatcactagtatactccctccgttttcctatatgatgttgtttcgttcatttttgaactaaccaacagcatataaaaaaaaatggggggagtattttttttgaggagtccattactagtgtactattttatcaaccgtatctccttttactgctatgggtagtcaaactgttgcaggtgctggttacacctagttattccaatgctggatgtatatgaccagggttaaataagcaatgcaatgttatttttgcggtatttttttttataaatttactattaaccttccttttgatgatatatatgttgtaacaaatgaaatactacaggctgaatgggaggaagtagccaatcgagctgatttgctaaagcaggaaaacagctcacttaaggaagaattgaaacaacttcaggagaagtgcaatagcttgacctcagaaaatacaactttacatgtaagatttgtgttcttctgttgtcctacacttcccataatgtgcagtagacaatagttactatttttagtttgctgcaaataagaaagtggatcaagggcaaaacatactaggggattacccaatcctcacaggctgttacttccaacgcattggttcactgataactacccctgaagtcctgaacccatcttcttttagacgtttggagttaacatttcattctttactttgaaatttatttgaggcatttttaatgattgtaggaaaagcttaaagagcttgaaggcgagaaatcaaatggaaactggtataaagagtgaaaagctgtaacttatcactttctgacttctgatgtaaggaataattacttggagctaccattgctattacagagtacatattcttaaaattttgttgtaactttcttgaattttcagataaattggaggcgacatggtaggtccgataattaggaggtattcatgtatgctattagatttttggccgagaggtagaattgtatcataggatttgacatgatggctacagattcttcttccagttgccgcggctgctgtactctatgcttttttttttctgcacttgtgtaagattctacgaagtaccatgtaaaagtccccaagtgatgtttgaaactctgggggttagcttctgagatagttgatgtagagctgctcattgagcgtctttacctgaattgatgtgtgtcacagttatagtttgtgacttatcattcagataattagaggcacaaatttgtataatgtactaacgggtcgtgataaggaaattttgttgcattttgct</dnaseqindica>|
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* Interdisciplinary Centre for Plant Genomics and Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi 110021, India
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Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001056041.1 RefSeq:Os03g0239400]|
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}}
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==References==
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[[Category:Genes]]
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<references>
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[[Category:Japonica mRNA]]
+
* <ref name="ref1">
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[[Category:Oryza Sativa Japonica Group]]
+
Nijhawan A, Jain M, Tyagi AK, Khurana JP. Genomic survey and gene expression
−
[[Category:Japonica Genes]]
+
analysis of the basic leucine zipper transcription factor family in rice. Plant
−
[[Category:Japonica Chromosome 3]]
+
Physiol. 2008 Feb;146(2):333-50. PubMed PMID: 18065552; PubMed Central PMCID:
−
[[Category:Chromosome 3]]
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PMC2245831.
 +
</ref>
 +
</references>
 +
 
 +
 
 +
==Structured Information==
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]]

Latest revision as of 06:55, 24 February 2017

The rice Os03g0239400 was reported as OsbZIP26 in 2008 [1] by researchers from India.

Annotated Information

Gene Symbol

  • Os03g0239400 <=> OsbZIP26,OsbZIP, bZIP26

Function

  • The basic leucine (Leu) zipper (bZIP) proteins compose a family of transcriptional regulators present exclusively in eukaryotes.
  • The OsbZIP proteins characteristically harbor a bZIP domain composed of two structural features: a DNA-binding basic region and the Leu zipper dimerization region.
  • bZIP proteins have been shown to regulate diverse plant-specific phenomena, including seed maturation and germination, floral induction and development, and photomorphogenesis, and are also involved in stress and hormone signaling.

Expression

  • The researchers from India find specific or coexpression patterns of rice bZIP transcription factors starting from floral transition to various stages of panicle and seed development.
  • bZIP transcription factor-encoding genes in rice also displayed differential expression patterns in rice seedlings in response to abiotic stress and light irradiation.

Evolution

  • The phylogenetic relationship among rice bZIP domains as well as with bZIP domains from other plant bZIP factors suggests that homologous bZIP domains exist in plants.
  • Similar intron/exon structural patterns were observed in the basic and hinge regions of their bZIP domains.
  • Detailed sequence analysis has been done to identify additional conserved motifs outside the bZIP domain and to predict their DNA-binding site specificity as well as dimerization properties, which has helped classify them into different groups and subfamilies, respectively.


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Labs working on this gene

  • Interdisciplinary Centre for Plant Genomics and Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi 110021, India

References

  1. ↑ Nijhawan A, Jain M, Tyagi AK, Khurana JP. Genomic survey and gene expression analysis of the basic leucine zipper transcription factor family in rice. Plant Physiol. 2008 Feb;146(2):333-50. PubMed PMID: 18065552; PubMed Central PMCID: PMC2245831.


Structured Information