Difference between revisions of "Os09g0280500"

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The rice '''''Os09g0280500''''' was reported as '''''OsbZIP70''''' in 2008 <ref name="ref1" /> by researchers from India.  
  
 
==Annotated Information==
 
==Annotated Information==
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===Gene Symbol===
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*'''''Os09g0280500''''' '''<=>''' '''''OsbZIP70,OsbZIP, bZIP70'''''
 
===Function===
 
===Function===
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* The basic leucine (Leu) zipper (bZIP) proteins compose a family of transcriptional regulators present exclusively in eukaryotes.
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* The '''''OsbZIP''''' proteins characteristically harbor a bZIP domain composed of two structural features: a DNA-binding basic region and the Leu zipper dimerization region.
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* bZIP proteins have been shown to regulate diverse plant-specific phenomena, including seed maturation and germination, floral induction and development, and photomorphogenesis, and are also involved in stress and hormone signaling.
  
 
===Expression===
 
===Expression===
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* The researchers from India find specific or coexpression patterns of rice bZIP transcription factors starting from floral transition to various stages of panicle and seed development.
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* bZIP transcription factor-encoding genes in rice also displayed differential expression patterns in rice seedlings in response to abiotic stress and light irradiation.
  
 
===Evolution===
 
===Evolution===
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* The phylogenetic relationship among rice bZIP domains as well as with bZIP domains from other plant bZIP factors suggests that homologous bZIP domains exist in plants.  
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* Similar intron/exon structural patterns were observed in the basic and hinge regions of their bZIP domains.
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You can also add sub-section(s) at will.
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* Detailed sequence analysis has been done to identify additional conserved motifs outside the bZIP domain and to predict their DNA-binding site specificity as well as dimerization properties, which has helped classify them into different groups and subfamilies, respectively.
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<br>
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'''''You can also add sub-section(s) at will.'''''
  
 
==Labs working on this gene==
 
==Labs working on this gene==
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* Interdisciplinary Centre for Plant Genomics and Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi 110021, India
  
 
==References==
 
==References==
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Please input cited references here.
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<references>
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* <ref name="ref1">
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Nijhawan A, Jain M, Tyagi AK, Khurana JP. Genomic survey and gene expression
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analysis of the basic leucine zipper transcription factor family in rice. Plant
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Physiol. 2008 Feb;146(2):333-50. PubMed PMID: 18065552; PubMed Central PMCID:
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PMC2245831.
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</ref>
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</references>
  
 
==Structured Information==
 
==Structured Information==
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{{JaponicaGene|
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[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 9]]
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GeneName = Os09g0280500|
 
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Description = Similar to Transcription factor HBP-1b(C38) (Fragment)|
 
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Version = NM_001069300.1 GI:115478339 GeneID:4346610|
 
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Length = 11697 bp|
 
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Definition = Oryza sativa Japonica Group Os09g0280500, complete gene.|
 
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Source = Oryza sativa Japonica Group
 
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  ORGANISM  Oryza sativa Japonica Group
 
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            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
 
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            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
 
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            clade; Ehrhartoideae; Oryzeae; Oryza.
 
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|
 
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Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|
 
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AP = Chromosome 9:6483789..6495485|
 
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CDS = 6484027..6484136,6484862..6484962,6485885..6485946,6486063..6486251,6486411..6486491<br>,6486708..6486767,6487536..6487613,6487781..6487838,6488186..6488454<br>,6492143..6492373,6494896..6495060|
 
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GCID = <gbrowseImage1>
 
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name=NC_008402:6483789..6495485
 
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source=RiceChromosome09
 
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preset=GeneLocation
 
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</gbrowseImage1>|
 
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GSID = <gbrowseImage2>
 
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name=NC_008402:6483789..6495485
 
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source=RiceChromosome09
 
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preset=GeneLocation
 
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</gbrowseImage2>|
 
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CDNA = <cdnaseq>atggggggctccagagaggaagatcgtcagcaccacaatcacctcccttctgagctccccctcggcttccggagctcctcaccgacgacgatgatcgcctcttcctccatgagcaaggaatcgagcaactacgacatggccgatttcgatcaagcttcgctttttctctacctagacagtcatgatcaacaatccatccaagaacaacgacaaactctgaacatcttcccttcccagccgatgcatgtagccgacccagctcatgaagcaaagagtgctggggtagccatggccatgcttcccaatggcaaccagctgcaggttcttccttctcatcccagcaagaagcctgatcagcaaggtggtcaaaagattaattccagtgtccctactaatccacctggccctaatcttcccttgcctaactctgccaaggataacaagaatagtagcctcattaagaaggaaggaagcagcagtgggaagggtgcaacaacatccaatgatccagaaagagaaggaaggaggacactagaccctaagacactgaggaggcttgcacagaatagagaggcagcaaggaaaagtaggcttaggaagaaggcttacattcagcagttggagtcaagtaggattaggctaagccagcttgaacaacaagttcacgtggcaagagtacagggtgctatgctgggtgctggagatcagcaccagggccttccttctggcccttcagctgcatcgttgtttgacctggagtatgggagatgggtggaggagcacagcaagctgatattccagctgagggcagccctgaacgagcagatggcggacagccagctgcaggtgttcgtcaacggcgcgatggcgcagcacgacgagctgctgagcctcaagggcgccattgccagggctgacatcttccatctcctctgtggcgtctgggctacccccgccgaacgctgcttcctttggctcggtggatttagaccctctgaggccatcaaggtgatgcttaagcaggtggagccgttgtcggaggggcagctgatgagcatctacgagctccagcaagcggcgaaggggacggaggacgccctcagccacgccatggacggcctccagcagtcgctctccgacaccgtcgccgcccctgacgtcgccgccgccggcggcttcatggggcacatgtccctcgccatgaacaagatctccgctatggaggacatcgtcaggcaggcagatggcctgaggcagcagaccctgcacaagctgcagcatatgctgaccatccggcaagccgcccggtgcttcgtggcaatctccgactacttccaccgcctacgcgcactcagcacactatgggttgcgaggccaaggccggaggaggggccggcaatgtag</cdnaseq>|
 
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AA = <aaseq>MGGSREEDRQHHNHLPSELPLGFRSSSPTTMIASSSMSKESSNY                    DMADFDQASLFLYLDSHDQQSIQEQRQTLNIFPSQPMHVADPAHEAKSAGVAMAMLPN                    GNQLQVLPSHPSKKPDQQGGQKINSSVPTNPPGPNLPLPNSAKDNKNSSLIKKEGSSS                    GKGATTSNDPEREGRRTLDPKTLRRLAQNREAARKSRLRKKAYIQQLESSRIRLSQLE                    QQVHVARVQGAMLGAGDQHQGLPSGPSAASLFDLEYGRWVEEHSKLIFQLRAALNEQM                    ADSQLQVFVNGAMAQHDELLSLKGAIARADIFHLLCGVWATPAERCFLWLGGFRPSEA                    IKVMLKQVEPLSEGQLMSIYELQQAAKGTEDALSHAMDGLQQSLSDTVAAPDVAAAGG                    FMGHMSLAMNKISAMEDIVRQADGLRQQTLHKLQHMLTIRQAARCFVAISDYFHRLRA                    LSTLWVARPRPEEGPAM</aaseq>|
 
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DNA = <dnaseqindica>239..348#1074..1174#2097..2158#2275..2463#2623..2703#2920..2979#3748..3825#3993..4050#4398..4666#8355..8585#11108..11272#aggtgacatccaaacgaaaagcttcagcccccttctttatagccttttgttacaagtataaaaacaagggtgcaaacagaagtcagttttgccattaatgtctgattttgtatcttttgctagcaagaggggatgtgcatagtgtgaggagagagaggtacaacaagaagagagaaattaagagagcagtagtagaggtgtgctgcaggaggatggtcagggccttcataagggcttcatggggggctccagagaggaagatcgtcagcaccacaatcacctcccttctgagctccccctcggcttccggagctcctcaccgacgacgatgatcgcctcttcctccatgtaagacaagatgtttgtttgtttgttgctgaattatgctactagccatgaagctaattcagagtgttcctcgtttaatttgcaccttcttcagagccctgctggtgttttatccatcttcagttggtttcttgtttctttagaataggaatttgaaaattccaagctgatttatggttttcttcttacccttttggtttcttgacatgcatctttgctgattttctctgctacttcaaagagattgaatcattcttctgctattggggtttaattttccattgattcttcttctgccgtagaggttttctcatcatgtatcttgcatctcgcgtcaagtttgaatttttaattaattgttttccaaaattcaaccatggacatatggggataattagagaaagacacgcacaagccccatcagggatcaccatataagatagtttattggttagttagggatcatggaaattgtttagccatgggctaagataaggagagaagctagacaacaaatcaccaaatactaggatatatttcttttctttgtatctttcaacaagcaacaagtagctagatcagagatggtttttaatggtcttcacataccgactcttctatctgctccattaaacaaaaagttgtactcctcctacttgctttctaatgtgtatgcaatatacctactgattcttgcttgtttcaccttctaatttcctttctaggagcaaggaatcgagcaactacgacatggccgatttcgatcaagcttcgctttttctctacctagacagtcatgatcaacaatccatccaagaacaacgacgtacgttaccgcgaaaaacctgatacttacccagcttctttttcctcccaaaatacactgatgatgatgtgtatatatgtgttagtaattcccttttcctttttccatttcgtacaccataatgttttgtcccctgccttttcctaggatatacgtgcgtgtgtgtacatatatatgtatggatgtatctctgattctttttcttctgattcatgtgtttttcttgtgttaatttttgttctctttttcttcggatttggtatttctttccggtgtgaggagtgtgacatgtaacagactctctgacgatgaccctctctctctctgcaaagaacttgatcttaaagaagctataaatattccttctttccatttctcccccattcctttccatttccaagcttctcatgtactctactgaatcatagccccagaagcatcccttccaactgttgttataccaccagtactacctgttgtgtcctttctctcaccgtgcatatatgccagacatggagtgagaaacatatctagagagagagattttgtaaacatgtactccctccatttcgaaatatttgacaccattaactttttagcatatgtttgaccgttcgtcttatttaaaaacttttgtgaaatatgtaaaattatatatttaacaatgaatcaaatgataggaaaaaattaataattacttaaattttttgaataagacgaacgatcaaacatgtgctaaaaagtcaacggcgtcaaacattttgaaacggagggagtaattaataagcagttttactgaagcaagagtagcttagcctgaactactttccagaagcttcctaaaagtactgaaccaaatagcctttctgaatgcttacatatgcacattagttgcttgctaattgcatggtttaatttgcagaaactctgaacatcttcccttcccagccgatgcatgtagccgacccagctcatgaagcaaaggtacgtgtgtgtgcatgcatgcatgcagatcgattaattcttggaccacatgtggagtactagtttttagtactagttactgtcttctgaattttgacatgtatatatatgttcagagtgctggggtagccatggccatgcttcccaatggcaaccagctgcaggttcttccttctcatcccagcaagaagcctgatcagcaaggtggtcaaaagattaattccagtgtccctactaatccacctggccctaatcttcccttgcctaactctgccaaggataacaagaatagtagcctcattaaggtattcatctctctctctctctctctctctctctctctcatatcatattttttagacaatggatagaaatatggctatatatatgctgcatatatatatgtatatcctttttttttctctgtgtgtcttctgaaggggccaaaaaaatgtggcttgcagaaggaaggaagcagcagtgggaagggtgcaacaacatccaatgatccagaaagagaaggaaggaggacactagaccctaaggttagtgagtcaatcattcatccatccatcctttgatacatttcatgatctctctctctctgcaggacttcaacagcacacaaaagtgcataagaaagtaattaggaggttgaacagtcactgtctgcaggaaataacctgcatattttatgactttttttgagcctgacaacttaattgtgtgaatatgtgtgtatgtatatgcacatgctgcagacactgaggaggcttgcacagaatagagaggcagcaaggaaaagtaggcttaggaagaaggtgagtgggtcaaccaagaaactcaacagcttattaattcaagctagaaaggaatctctcctacatgtactgtttgtgtgtgtttttgtatatatttgtgtttgcagaaacgtacaatactctaggaaaagtacaaacatatctcttaacaataatgttaatatagatgacatgtatatgttgttcacgcaagtgttcccaatatgtatttttgttatcaactttattttgtttgctacatgcatgcatggagtgctagctcgcgattaaatgtactgaccgactttgtgatgtagttgtttttggctctttctttgggacttatgtgctgaaggatatacttatttttactagctttaatgtgaatttgaccgcccaaccaatgcaagaaacattatcacttttcatatgtacatttccaatttctttatggtctcaggtgtgaattattatgatggtactggctatttgaaacatgcatgagtcttatattaagaataatgcccatgatttttttatgtaccatcctttaataattagttatcatctaaaaaaatccattaattggccagaaaaaaaaccatcaattaacgtgtcagtagaatttaagttagtagcagtttcttttaaaaaaatcgtctccgatatttcatatattcgttttatgggcacgtacaataacaaatccatggtttctgctaaaattggatgtggatttatgctatttatattgatgagtatatatatatacattgctttattcttcaggcttacattcagcagttggagtcaagtaggattaggctaagccagcttgaacaacaagttcacgtggcaagagtacaggtaaaaagctaggcttgaaaatgtctaattattaacgaattaattatatctcccagtatattttttggaaacttacttctttattttcttctgaaaaatatttaatttctggcctctacatatattatgcaagtcctgacaaataactactatatatgatatttcagggtgctatgctgggtgctggagatcagcaccagggccttccttctggcccttcagctggtaatgagacactccaacctatctctctctctttttttttatcagttacttcctccattccaaaagattgcaacttttagatacctgaacaagtatttttataattaaaagttactatattttggaacagatagagtactcaattttattacaattaaggatatgcctctataatttaattaaacagcattaattttagtaacaacacaaatcccgtattcgattgttttccttcgtaaagtttttctcctgctttattaatataattggcagtttttcggctggttcgtttcgaaaaagaacacaaataattaataactatctcattgtgatgagcatatatgcagcatcgttgtttgacctggagtatgggagatgggtggaggagcacagcaagctgatattccagctgagggcagccctgaacgagcagatggcggacagccagctgcaggtgttcgtcaacggcgcgatggcgcagcacgacgagctgctgagcctcaagggcgccattgccagggctgacatcttccatctcctctgtggcgtctgggctacccccgccgaacgctgcttcctttggctcggtggatttagaccctctgaggccatcaaggtatatatatatatatatggttgtcaaacattaaattattatattgctgctgaaccaattaaaacgtattcccttcgttttttaatacagtacatatttgataattcatcgtatctaaaatatttttgtgcaaatgcataatatatataaatcaggcttaacgtacttttactggttaaacaactaacaaaaaaataaa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Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069300.1 RefSeq:Os09g0280500]|
 
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}}
 
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[[Category:Genes]]
 
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[[Category:Japonica mRNA]]
 
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[[Category:Oryza Sativa Japonica Group]]
 
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[[Category:Japonica Genes]]
 
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[[Category:Japonica Chromosome 9]]
 
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[[Category:Chromosome 9]]
 

Latest revision as of 05:10, 25 February 2017

The rice Os09g0280500 was reported as OsbZIP70 in 2008 [1] by researchers from India.

Annotated Information

Gene Symbol

  • Os09g0280500 <=> OsbZIP70,OsbZIP, bZIP70

Function

  • The basic leucine (Leu) zipper (bZIP) proteins compose a family of transcriptional regulators present exclusively in eukaryotes.
  • The OsbZIP proteins characteristically harbor a bZIP domain composed of two structural features: a DNA-binding basic region and the Leu zipper dimerization region.
  • bZIP proteins have been shown to regulate diverse plant-specific phenomena, including seed maturation and germination, floral induction and development, and photomorphogenesis, and are also involved in stress and hormone signaling.

Expression

  • The researchers from India find specific or coexpression patterns of rice bZIP transcription factors starting from floral transition to various stages of panicle and seed development.
  • bZIP transcription factor-encoding genes in rice also displayed differential expression patterns in rice seedlings in response to abiotic stress and light irradiation.

Evolution

  • The phylogenetic relationship among rice bZIP domains as well as with bZIP domains from other plant bZIP factors suggests that homologous bZIP domains exist in plants.
  • Similar intron/exon structural patterns were observed in the basic and hinge regions of their bZIP domains.
  • Detailed sequence analysis has been done to identify additional conserved motifs outside the bZIP domain and to predict their DNA-binding site specificity as well as dimerization properties, which has helped classify them into different groups and subfamilies, respectively.


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Labs working on this gene

  • Interdisciplinary Centre for Plant Genomics and Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi 110021, India

References

  1. ↑ Nijhawan A, Jain M, Tyagi AK, Khurana JP. Genomic survey and gene expression analysis of the basic leucine zipper transcription factor family in rice. Plant Physiol. 2008 Feb;146(2):333-50. PubMed PMID: 18065552; PubMed Central PMCID: PMC2245831.

Structured Information