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| − | {{JaponicaGene|
| + | The rice '''''Os11g0152700''''' was reported as '''''OsbZIP79''''' in 2008 <ref name="ref1" /> by researchers from India. |
| − | GeneName = Os11g0152700|
| |
| − | Description = Similar to Transcription factor HBP-1b(C38) (Fragment)|
| |
| − | Version = NM_001072304.1 GI:115484220 GeneID:4349800|
| |
| − | Length = 6272 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os11g0152700, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os11g0152700''''' '''<=>''' '''''OsbZIP79,OsbZIP, bZIP79''''' |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | ===Function=== |
| − | |
| + | * The basic leucine (Leu) zipper (bZIP) proteins compose a family of transcriptional regulators present exclusively in eukaryotes. |
| − | Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
| + | * The '''''OsbZIP''''' proteins characteristically harbor a bZIP domain composed of two structural features: a DNA-binding basic region and the Leu zipper dimerization region. |
| − | AP = Chromosome 11:2444379..2450650|
| + | * bZIP proteins have been shown to regulate diverse plant-specific phenomena, including seed maturation and germination, floral induction and development, and photomorphogenesis, and are also involved in stress and hormone signaling. |
| − | CDS = 2444573..2444654,2445231..2445373,2446167..2446406,2446649..2446920,2447024..2447063<br>,2447164..2447241,2447319..2447378,2447541..2447600,2448727..2448873<br>,2449028..2449125,2449562..2449689,2450042..2450148|
| + | |
| − | GCID = <gbrowseImage1>
| + | ===Expression=== |
| − | name=NC_008404:2444379..2450650
| + | * The researchers from India find specific or coexpression patterns of rice bZIP transcription factors starting from floral transition to various stages of panicle and seed development. |
| − | source=RiceChromosome11
| + | * bZIP transcription factor-encoding genes in rice also displayed differential expression patterns in rice seedlings in response to abiotic stress and light irradiation. |
| − | preset=GeneLocation
| + | |
| − | </gbrowseImage1>| | + | ===Evolution=== |
| − | GSID = <gbrowseImage2>
| + | * The phylogenetic relationship among rice bZIP domains as well as with bZIP domains from other plant bZIP factors suggests that homologous bZIP domains exist in plants. |
| − | name=NC_008404:2444379..2450650
| + | * Similar intron/exon structural patterns were observed in the basic and hinge regions of their bZIP domains. |
| − | source=RiceChromosome11
| + | * Detailed sequence analysis has been done to identify additional conserved motifs outside the bZIP domain and to predict their DNA-binding site specificity as well as dimerization properties, which has helped classify them into different groups and subfamilies, respectively. |
| − | preset=GeneLocation
| + | <br> |
| − | </gbrowseImage2>| | + | '''''You can also add sub-section(s) at will.''''' |
| − | CDNA = <cdnaseq>atgggagaagctagcagtagttcaggacatccaaggcagaatcctcatgttcttggctatggcttccatggagctatgcccaactccttgccttctgcaaacttgttcgagcagcaaggaggtgctaactattttggagaactagaagaggctctgatgcaacaggtggccacactcaggaggactcaacaaactgcaaccaccacctccacccttcatcatggagacaccacccccttctccaccactgctactgctgcggctacagctaggcctcctcctacactggacatcttcccatcctggcctatgaggtctctccacacacccaaggagggttcaaatgtgacagcagacacaacagactcggagagcagcagcaagaacaacagcaaccaaaatgcctcatcagaccagcatgtgctagtaggagacatggcaggccagttcgaccaaattccacagcaggaacaacacaagaagatggcaactaacagtcccactcatagcagcaagactggcaaggcgcttgatccaaagacgatgagaaggctcgcccagaaccgagaagcagcacggaaaagccgactgcgaaagaaggcttacatccagcagcttgaaagcagcaagctgaagcttgctcagatggaacaggatatccacagagctcgttcccagggcttactgcttggagctccaggtggaaacaccagctcaggtgccgcaatgttcgacgtcgactacgcccggtggctggaggaagacagccagcgcatggctgaactgcacggagggctgcacgcacatctgccggacagcgacctcagagccatcgtcgacgacacgctaacccactacgaccacctcttcaacctcaagggcatggcggccaaggccgacgtgttccacctcatcaccgggatgtgggcgaccccagctgagcggtgcttcctctggatgggcggattccggccctccgagctgctcaagacattgacaccccagctggatcccctgactgagcagcaagtggttggtatctgcaatcttcaacagtcatcgcaacaggcagaggaagctctctcccagggcttggatcagctgcatcagtcattagcagaaaccgtggctggagggtccccgttggatgaccccaacgtcgggagtttcatgggtcacatggctattgccctcggccagctatcaaatcttgaaggttttgtcatacaggctgataatttgaggcagcagactatccatcagatgcacaggattctgacagtcaggcaggcagctcgatgtttcttggccattggagagtaccataatcgcctccgtgccctgagctcactttgggcttctcgccctcgagagatactggtggcagatgaaggcaattgtggagagctaagcattgcagcacatccatctgagagccaatattcagccttctga</cdnaseq>|
| + | |
| − | AA = <aaseq>MGEASSSSGHPRQNPHVLGYGFHGAMPNSLPSANLFEQQGGANY FGELEEALMQQVATLRRTQQTATTTSTLHHGDTTPFSTTATAAATARPPPTLDIFPSW PMRSLHTPKEGSNVTADTTDSESSSKNNSNQNASSDQHVLVGDMAGQFDQIPQQEQHK KMATNSPTHSSKTGKALDPKTMRRLAQNREAARKSRLRKKAYIQQLESSKLKLAQMEQ DIHRARSQGLLLGAPGGNTSSGAAMFDVDYARWLEEDSQRMAELHGGLHAHLPDSDLR AIVDDTLTHYDHLFNLKGMAAKADVFHLITGMWATPAERCFLWMGGFRPSELLKTLTP QLDPLTEQQVVGICNLQQSSQQAEEALSQGLDQLHQSLAETVAGGSPLDDPNVGSFMG HMAIALGQLSNLEGFVIQADNLRQQTIHQMHRILTVRQAARCFLAIGEYHNRLRALSS LWASRPREILVADEGNCGELSIAAHPSESQYSAF</aaseq>|
| + | ==Labs working on this gene== |
| − | DNA = <dnaseqindica>5997..6078#5278..5420#4245..4484#3731..4002#3588..3627#3410..3487#3273..3332#3051..3110#1778..1924#1526..1623#962..1089#503..609#tcatgacaaaaaccttcgagtgaagacaagaccctagaccgtctctctctctctctgaccaaggctagctagggaaggaagaacaaaaacagcataggaaggacaacatctttctctgaactgtgggattagtacgcccaagaacgtgaagctattacaccgtcagatatatcaagaagatgcaggcggagcaagagcaactgcgcacagaaacggtcaggcatgcctgctctccctcctgcttgtcataaaagggaagccacaagctggtatgttttcttgactcaaatcttcttcgttcagatgtatgcttgctgagagcctgagataggtgtatttgtgtagtatcgatctttgatgtttttccttctttttttgtgcgttttgagcgcagaagccagattgctagaaggtagttcttgaggactgaagcaaggtagaagaacttgagcttctggttcgtgtggagctactgggataagttggctgctgattgctgaagatgggagaagctagcagtagttcaggacatccaaggcagaatcctcatgttcttggctatggcttccatggagctatgcccaactccttgccttctgcaaacttgttgtaagagctctctctctctctctctctctctctctctctccatgagtcttcttttctctttttgtgattcaatttatgcaggtgcaccaagaaacatgatctgcaccatgcactttctttgcaagttttgcctagctaaccatacatatttactggctaaatcaaatttcttttacttgttttgacgtatgcttgtcaacttgacttcttttttttttactatatactgttcttcatgcttcgtagtacgtacacaagaatctttctgtagaccaattttgcacaattttcccccaataagctgttggtctaatgctaatacaaattaattacccctatgcatccctgacagcgagcagcaaggaggtgctaactattttggagaactagaagaggctctgatgcaacaggtggccacactcaggaggactcaacaaactgcaaccaccacctccacccttcatcatggagacaccacccgtacgtacatctctctctctctcatgtgtgtgtgtgagaccagttgaacaagaccaaaaacacacaaccttgtgaggcactttctggagaggttagggcattgtagtcaaaagcagccatgggagagcagtagaagtggtggcagttgtcctgcttgtgctgtgtgcagtactaccttggcatggccatggcatgagagtgtgactaccttgtgactcctctccatctctctagtctcttgcagtacgagtaccagagagagtgtctaccaactttctggctccctgactgcaagcacagctcaaagagaataaattccactgactttcactgtgacagggaccccacaccttgtgatcccaatgcagccttttcacctctggtgtattgccatgcatttcttgatctccttctcccctatgatatcttcttgcagccttctccaccactgctactgctgcggctacagctaggcctcctcctacactggacatcttcccatcctggcctatgaggtctctccacacacccaaggtatgctttgcatctactgtctactgtactgcctattggttgtatcaacgacatgtggttttacacaagtattagctctggtaaatattcatgctgcatataaagttttttacagctgtggtctgagccctggctttgctttggcatgttgtaggagggttcaaatgtgacagcagacacaacagactcggagagcagcagcaagaacaacagcaaccaaaatgcctcatcagaccagcatgtgctagtaggagacatggcaggccagttcgaccaaattccacagcaggaacaacacaaggtatgcaatgcattgctgtgatctcgtatcactgttgcttgatgcatcggtggtctggtattgtttctgtgcttcccgtttctgtgctttgatttgtcttggtcatccttatcatgcaagcgcaatggtattgttccctagcctggcgtcatgcatgtccctagctccacaacttccaagatgctcatgtagatacatgctcctataggtagaacaaccattgttcaggggcatttaagatctcgctgctcccaagatcgccaatcccaacacgtttggtgaatcatttggccctatagaaagttccaactaatttccctgatgcttcttccatgggaccagtgttttctaccatcagacgctactaatatattactactagatagagaatattagtcagtcatctctttgcattcttaagaaacaaagaagtcatcttcaatttctattgggacgatgcaaatctttatttgactgcacttattatcaggagtatggacaatctcttcagcaagaaacagtcgttctagttgatcttttattgttggaatggataagtttagagggtttggatatgttagattagtgcatgcttgttcatgtggtggctgcatttctgccattggcctgctgcaataagtgacaaatgagctttcttacaatattgtctctatagcttgcaaaccttgtgcgctaataataaaaatgaactaatcgataatacaaatgatactttgggtcagtggtgctttagttgttttctggtcaattgatgaattgccaatatataggatgaataaataatcgcatggactatttaaattcgctcataaccgaaagagagctctacatattaggcctcgacagcaacatataaaaaaaaagcagaaccagtttttgtctgttgttagagtgggtggcttccaccaaatgtacacgactgtttttattattgtgcttgatgtaacgtgctgtagaaaccatactatattgcttacaccataaacgcatacacatagcattgctctaccatttatcccctagttagtgtgtaattacagattaatttgtgcacaggtgtagtaaattccatattctgatttgttcatgtccacttggcatgcagaagatggcaactaacagtcccactcatagcagcaagactggcaaggcgcttgatccaaaggtctcttatcttcttattagtttgatgcttagagtgtgctgacgtgtgctgtgtgcatgcatgcatgccaagcagatgcacagagccatgcagtgcaagctaatgaccatttcgaggcagtatttgagattgagagttttttttttctcttggtgtcatcagacgatgagaaggctcgcccagaaccgagaagcagcacggaaaagccgactgcgaaagaaggtgaatgttgtgaccgatactcggcacgcagcagtaaattttccatgttctaacagtttcgtgtatggatcatacaggcttacatccagcagcttgaaagcagcaagctgaagcttgctcagatggaacaggatatccacagagctcgttcccaggtaactttctttcaacacatccataattttataatcgacaaattgactatgtgtttagcttagttatacagcgtaatctgattttttgagctatgtttagggcttactgcttggagctccaggtggaaacaccagctcaggtgaatatatttgatataaacttatctatgaacttcagctgggatctgcagacgggactatggttcactgaaactgagctgtatgactgacatttatttccaggtgccgcaatgttcgacgtcgactacgcccggtggctggaggaagacagccagcgcatggctgaactgcacggagggctgcacgcacatctgccggacagcgacctcagagccatcgtcgacgacacgctaacccactacgaccacctcttcaacctcaagggcatggcggccaaggccgacgtgttccacctcatcaccgggatgtgggcgaccccagctgagcggtgcttcctctggatgggcggattccggccctccgagctgctcaaggtatggatgaccttatctctgaacaaaacatcagtcatcagattacagcgtctcttgtatttgctgaattgagtctatggctaatttgatcagaaacaagacactcacttcagagttgaaaatgaaaaattttctccaacaaattcttcaggaagatgaaaccaagctaaaatctgagctcatctttcaagtatacatatacaattctccaatctcactgcatattttttatgttgatgcagacattgacaccccagctggatcccctgactgagcagcaagtggttggtatctgcaatcttcaacagtcatcgcaacaggcagaggaagctctctcccagggcttggatcagctgcatcagtcattagcagaaaccgtggctggagggtccccgttggatgaccccaacgtcgggagtttcatgggtcacatggctattgccctcggccagctatcaaatcttgaaggttttgtcatacaggtaaagatttccagttgtatctgctactcttcaatattgatcatcttgtcattttgtcagatcaagataggagttgcactctctctttgtgtgactcaacttcataaatgagctagtaactacgtaaaattgttgagtgtaaaatgttgctgtgttcagtagaatgtttatctgtctagccactgcccagtagccaaagctgtgtcctagtaaaccttaacagtgctgccaaaaaatgtattaaaaataattaactagtccatatgtaagagaatatatcatgttatggctccatcatgtagagatgttactgtatctaacattgtagaaagaaaagactttccaactaaaacaagtagcaaaacaaatatgtactgccggcaacttttagttagattccaggaatgggttttactggaacacacataaaactaaggccgtgtttagttcgtgtgccaaattttttttgaagtatacggacacatatttaaagtattaaacgtagactaataacaaaacaaattacagattccgcctgtaaactgcgagacgaatttattaagcctaattaacccgtcattagcaaatgtttactgtagcatcacattgttaaatcatggcgtaattaggctcaaaagattcgtctcgcaatttacatgtaaactgtgcaattggttttttttcgtccacatttaatgctctatgcatgtatccaaacatttgatgtgatggaatttttggaagtttgaagggaactaaacactgcctaatgtgcaccacattggatttccaggctgataatttgaggcagcagactatccatcagatgcacaggattctgacagtcaggcaggcagctcgatgtttcttggccattggagagtaccataatcgcctccgtgccctgagctcactttgggcttctcgccctcgagagtaaaccccatgcctgtagttgattctttttttcctataaaaaagggatattctcctgctcatagttattgtagttaatattttttacttttactagataattttgaagtatgattgagccatgacttaatataggcgggaatcatctaaataacttatcagagattgagccgtgcactactaatcaggttgaaatggaccttcctcctaacaggaaacaaaagtcagaaagcttattttttagaccatgtcactttctcattcttaaggttaagatgcccctaaaggactgccccaattatattaaatttaaacgagtataatttacactttaacatattcagccttgaaagtatatgattctcttacccttaaaagaacatgacaaaacacagtgcatgtcatggtgtaaaataaggacacggttttctgtggcttctctgtagatttttcaactatttcagccaactaaccaaattctatatgtgaaacaagccacaaagtcagcagctgtgacagtacgtccttttttatgcatttctcatcttatttgctggtgcctttcattgcttgtaggatactggtggcagatgaaggcaattgtggagagctaagcattgcagcacatccatctgagagccaatattcagccttctgaaatcctgtttcaaatgtattttgcaactaaccttcaaagtagggagcaaaagcttgttttttaaatgaaatctagcactctagcagatatgtgagaaactcagaagagagttgggaaacaatggaaggctccagctgcactagcaaaattttcagatggaatgaatgggattgcatgattttcagttactgatc</dnaseqindica>|
| + | * Interdisciplinary Centre for Plant Genomics and Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi 110021, India |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001072304.1 RefSeq:Os11g0152700]|
| + | |
| − | }}
| + | ==References== |
| − | [[Category:Genes]] | + | <references> |
| − | [[Category:Japonica mRNA]]
| + | * <ref name="ref1"> |
| − | [[Category:Oryza Sativa Japonica Group]] | + | Nijhawan A, Jain M, Tyagi AK, Khurana JP. Genomic survey and gene expression |
| − | [[Category:Japonica Genes]]
| + | analysis of the basic leucine zipper transcription factor family in rice. Plant |
| − | [[Category:Japonica Chromosome 11]] | + | Physiol. 2008 Feb;146(2):333-50. PubMed PMID: 18065552; PubMed Central PMCID: |
| − | [[Category:Chromosome 11]]
| + | PMC2245831. |
| | + | </ref> |
| | + | </references> |
| | + | |
| | + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 11]] |
