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| − | {{JaponicaGene|
| + | The rice '''''Os04g0470700''''' was reported as '''''OsAAT35''''' in 2012 <ref name="ref1" /> by researchers from China. |
| − | GeneName = Os04g0470700|
| |
| − | Description = Amino acid transporter, transmembrane family protein|
| |
| − | Version = NM_001059588.1 GI:115458905 GeneID:4336122|
| |
| − | Length = 10114 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os04g0470700, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os04g0470700''''' '''<=>''' '''''OsAAT35,AAT35''''' |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | ===Function=== |
| − | |
| + | * Amino acid transporters (AATs) are the integral membrane proteins which mediate the transport of amino acids across cellular membranes in higher plants, and play an indispensable role in various processes of plant growth and development, including long distance amino acid transport, response to pathogen and abiotic stresses <ref name="ref1" /> <ref name="ref2" /> . |
| − | Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|
| + | ===Expression=== |
| − | AP = Chromosome 4:23911400..23921513|
| + | * Diverse expression patterns of '''''OsAAT''''' genes indicated diverse biological functions of the amino acid transporters and the important roles of OsAAT genes in N uptake, metabolism and distribution during N starvation. |
| − | CDS = 23911700..23912101,23912226..23912453,23912558..23912691,23912895..23913109,23918490..23918583<br>,23920968..23921204,23921316..23921406|
| + | ===Evolution=== |
| − | GCID = <gbrowseImage1>
| + | * The increase in the number of OsAAT members reflects that expansion and rearrangement of the genome may be successfully undergone in the '''''OsAAT''''' family, and these transporters increased in rice might play an important role in order to adapt to specific functions. |
| − | name=NC_008397:23911400..23921513
| + | <br> |
| − | source=RiceChromosome04
| + | '''''You can also add sub-section(s) at will.''''' |
| − | preset=GeneLocation
| + | |
| − | </gbrowseImage1>|
| + | ==Labs working on this gene== |
| − | GSID = <gbrowseImage2>
| + | * National Key Laboratory of Crop Genetic Improvement,Huazhong Agricultural University, Wuhan 430070, China |
| − | name=NC_008397:23911400..23921513
| + | |
| − | source=RiceChromosome04
| + | ==References== |
| − | preset=GeneLocation
| + | <references> |
| − | </gbrowseImage2>| | + | * <ref name="ref1"> |
| − | CDNA = <cdnaseq>atggcgctcggcgacggggacgacggcgcggccgccgccgccgttcctctcatctcggatcgccccaagcatgccgccatcgtcagaagcgggacggagtggacggcggcggcgcacgtgatcacggcggtgatcgggtccggggtgctgtcgctggcgtggagcgtggcgcagctggggtggctggcggggccggggatgatgctcgtgttcgcggccgtgacggcgctgcagtcggcgctgttcgccgactgctaccgctcgccggacccggaggtcggcccgcaccgcaaccgcacctacgccaacgccgtcgagcgcaacctaggtagctcgagcgcgtgggtctgcttgttgctgcagcaaacggccttgttcggctacggcatcgcctacaccatcaccgcctccatcagttgcagggcgatcctgaggtccaactgctaccacacgcacggccacgacgcgccctgcaaatacgggggtagctactacatgctcatgttcggcgcggcgcagctgttcctctccttcataccggacttccacgacatggcgtggctgtcggtcctcgccgcggtcatgtcgttctcctactcgttcatcggcctcggcctcggcctcgccaacacaattgctaatggaacgatcaaaggaagcataacaggtgctccaacgagaacccctgtgcagaaggtctggcacgtctcgcaggccatcggcgacatcgcattcgcgtacccgtactcattaatcctcttggaaattcaggacacactgaaggctccaccggccgagaacaagacgatgaagaaggcgtccatcatctcgatcgtcgtcaccaccttcttctacctctgctgcggctgcttcggctacgccgccttcgggagcgacgcccctggcaacctcctcaccggcttcggcttctacgagccctactggctcatcgacttcgccaacgcctgcatcatcctccacctgctcggcggctaccaggtgtacagccagccgatataccagttcgcggacaggttcttcgcggagaggtacccggcgagccggttcgtgaacgacttccacacggtgaagctgccgctgctgccgccgtgtcgggtgaacctcctgcgggtgtgcttccggacggtgtacgtggcgagcaccacggcggtggcgctcgccttcccctacttcaacgaggtgctcgcgctgctcggcgccctcaacttctggccgctcgccatctacttccccgtggagatgtacttcatccagcgccatgtcccgcggtggtcgccccggtgggtcgtgctgcagtcgttcagcgtcctctgcctcctcgtcagcgccttcgcgctcgtcggctccatccagggcctcatcagccagaagctaggctaa</cdnaseq>|
| + | Lu, Y., Song, Z., Lü, K., Lian, X., & Cai, H. (2012). Molecular characterization, expression and functional analysis of the amino acid transporter gene family (OsAATs) in rice. Acta physiologiae plantarum, 34(5), 1943-1962. |
| − | AA = <aaseq>MALGDGDDGAAAAAVPLISDRPKHAAIVRSGTEWTAAAHVITAV IGSGVLSLAWSVAQLGWLAGPGMMLVFAAVTALQSALFADCYRSPDPEVGPHRNRTYA NAVERNLGSSSAWVCLLLQQTALFGYGIAYTITASISCRAILRSNCYHTHGHDAPCKY GGSYYMLMFGAAQLFLSFIPDFHDMAWLSVLAAVMSFSYSFIGLGLGLANTIANGTIK GSITGAPTRTPVQKVWHVSQAIGDIAFAYPYSLILLEIQDTLKAPPAENKTMKKASII SIVVTTFFYLCCGCFGYAAFGSDAPGNLLTGFGFYEPYWLIDFANACIILHLLGGYQV YSQPIYQFADRFFAERYPASRFVNDFHTVKLPLLPPCRVNLLRVCFRTVYVASTTAVA LAFPYFNEVLALLGALNFWPLAIYFPVEMYFIQRHVPRWSPRWVVLQSFSVLCLLVSA FALVGSIQGLISQKLG</aaseq>|
| + | </ref> |
| − | DNA = <dnaseqindica>9413..9814#9061..9288#8823..8956#8405..8619#2931..3024#310..546#108..198#tgagcgacagcgagcctgtctcttaaaaaaaataaaattagtcccctccacgcgccgcgtgttcctcgtcctctggttgccaggacagagcacggggcccggcggcgatggcgctcggcgacggggacgacggcgcggccgccgccgccgttcctctcatctcggatcgccccaagcatgccgccatcgtcagaagcggtgagcgtgcacgagctccctcaattcgttctgttccgattcttttcttgaatcccctcttcttcttattcttcctggaatcttggtcgatgtgtctgaatgttcgagcagggacggagtggacggcggcggcgcacgtgatcacggcggtgatcgggtccggggtgctgtcgctggcgtggagcgtggcgcagctggggtggctggcggggccggggatgatgctcgtgttcgcggccgtgacggcgctgcagtcggcgctgttcgccgactgctaccgctcgccggacccggaggtcggcccgcaccgcaaccgcacctacgccaacgccgtcgagcgcaacctaggtacgcccccactcgtgatttcatctccctctctctctctctttctctcctacattcacaagcatcgcacggtatccgtttgattggtggattgagacattagcatttgacttggggaaaaaaagaaatagtttcttgccaatttcttctctcgttacgttatttcatctgttcttgagaaagtctttctcgcttaactggtcaccacacacacacggggttattaattatgaaaatgccattcgaacgggatgatatagttgagatatcatcctttcctctattaattaacctgcgaggcgcaacgagactatgtgctgattagcgctgtcctaccacgtaaatgtccctgtcaagcaagattggtgaatcgtgggggtaaagcgtaacataaaaaaagaagaaagaaaaaagtgaggcgcgcgcacacggccacggtcacgggcaccactcgaggataggagaaggctcgtgaaatccgcggcccgcacgcccagggtcgccgtccgtccgctgcgcgcagctcacgccggcctcacggcacgcacgcgcctctcgggggggacgtagcgacgctcccccgtcgctcgcgcgcgcgcggggcggcatgcgagttcgcgagtcgaacgcctcaccgagttcgtgggggagttggtgtttgggtttgggctggaacggccgcgtgggagaaggtagcgcgtgtaacacattggaaggcggcgtactgaagaggacaggtgaatacgtgatcgctgctgattcggtaccggtgtccggcgattcggcctgctgttagtggggtcgatatgacaattttttttaagataagaatgaatcatccaatgattgttcagaataaacaacttgttcacgcgatgctcgcgcatggaaggggaaaaaaggggtgagctttacatgccaatgttttattgccatgctggcagaggtctcatgccacgccataggggaggtagcatatttatcttttttaaaagttttgtttaaaaatgtttataccgactttaactatgatacgtaggcacattctcttttcttaagttgaaccagtctacaaagaaaatcttatttaagaatgatgttattgtgttgcaaatataccaaaattgtaagtgtttcggttgtcattgttaaagcaaccaatagataccaaaattctgttttcatacctaatcagattttaagttctgaacagcttcccctttacaagagctattggaaaacaaactctaaacaataagggtatgttcaaagctagagctcggtatggattctcttcgtactacacatcagcgaagaaactcctacctacaaacgactctctttagctgactctccattaatacagggtaataaaatggctaataaattcattgcctataatcaaatgataatttcagcctcacatatatttgtatctcttctctatacaacaactactacattgtatctgccaaatttcttccgcgtgcaatttttacatgggatctggaggcctagctctgctgaaaaccaattctacaatgggggcctctcctcgagtctgcttgttttttgcacgagaggagccaatgcttcagcaatgtcatagatagcattgttgtttctctcttagctatcctctctcttccacgtcatttgatttgcctatgtgccactgaagagatccggctagttaatgcctttgtacgtgctctaagaaatggtttgggcgagtcgttctctcgtcctttcgcgcatgtgcattgggagctggcaagctcccaagcccggtcttgtcaatttagtggcccggagcgaagctagaacgatgggtcctttaatacaactctgataatataatgatgtttttaacaaatgtaatgcataaaaaaacattcttatcaaataagttgtatatcttcctcttctgtgcttactaaatataagttcctatggcctatgggctcctatattcataacatacatatatgtagggttgggccccttgacttcgagggcccaatacggtggtacagctcaacccccacctcaaggccgggcgcctgcacgctccctctccagtggagagtgaaaaggatgggaaagggaattctaggaagctaattaggagaactgttgaagttaagcctaaaattctaagattggaacccataattggtatctattgatgatgttcttatgggggcataaagatatatcatgtttgggatggcatattggtaggacaaatccctatcaacatgaacatctgcactatcttgtgtaggtcgttaaaaaaattgtttagaaaatttggtacgttggttttcgctccgtcgcccatgactgacgatcacagtgcaacacggaatggttttcaacaggtagctcgagcgcgtgggtctgcttgttgctgcagcaaacggccttgttcggctacggcatcgcctacaccatcaccgcctccatcagttgcaggtacgccaccccacctacgcgcccctcctttacatttgccgcactacgcattgtccacttctttttgtgcgcggaagcaagcaagcaagtatgccgaattgccgatgatgtttgatattttcatcgcttaattacctcgagcagcatcgagcgcacactactccgttagtcacacgatttcacgtccccctttcgcggtggcctccatcggctcgcggcgcggagccaccgattccagtttccttcccgtttcacgtctccctttcgcatgcgggccgctgttccgcctcggttgcctgggccctgacgccgcgggctgtggctagaggaataagttcactttaggtcccttaatttgtcgctcagtctgattttcatcctcagtccacaaaaccggatacaatgcttcccccaacttaccaaaaccgtgcagacgaggtcccttggcagtttggaaggcggttttcactgacgtggcgtctatgtggctggtttgactaggtctctgtcctacatggcattgacgtggcgcttacgtggcaattatatttcggaaaaataataaaaatcatggccccacatgttagctccacacaaaatataattttaaaatggtggggcccacgtgggcctcacatgtcagcctcactcttccattctctctcttcttcatcttcactcctctcttcttccctctcccctctccctctctctcttcttcttcccgggcagtggacgggcgggtgggtggcagggcaggcgagcgaggcaggttgtccgagctccgatggcggcggctcggcatgcgccatggggggggatgagggactcggcgacgatgggggcaggggcaggagccttggagttcttcttcttcttcttggccggcgccggcacagggggtgtcggcttggtggggatggtggcgggcgcttcagcgatgagggaaggaggcgaggcggcggcgagcctcgacgggtgccttggtggacttggtggccgccggccatctctctcttgcgcacgctcgccgtccgccgcccttctccctgatggccgcgggccaccgttcttctctttctcgcgcgtgcttcccggcaagccagggagctcggggagggaggaaggatgccaggagggagaagggtgaagggtggcggacggatccacaaccgtcgccgcctagctccttcccgccggtcatcgcccttctccccgatggccgtcgttcccatcggccgccggtcgccgttcttctctctcttcgcgtgcgctcgccggccatccacttccgctaggaggcctcttcgccaccctcgtcggcctccccgcgtcctccctctccgctatctcatctccaactcgtcatctcccggtgggacggcggcgcacggtgctcgtagtcgtcgtcgccgggcaaggagggagagggggccttcttgccaccggcatgctttgaccaccacccgccctacaatgccgaagaagggagaaacgaagaggatatagatgacatgtgtggccacatgggcccaccttttttattattttatgtgcgaaactgacatgtgggccccatggggtttattattatatttggatcaaattgccacgtaagcgccacgcaagtgccacgtcggacgaagacctagtcaaacgatacacgtaggcgccacatcggccaaaaccggggtcaaatactgtcgagggacctcgattgcacggttttaaaagttggaggacgtgttgtacccggttttccggactagggacaaaaatcagactgagcgacaaattgagggacctagagtgaacttattccgtggctagatggatcggcacaccaacggtccaacgcttcaaggcctgactagtgttgcggatgcatggcccaacaggaacaaggcccgactagtgttccttcctgagttcaccgcaatacggccccgatcgtcgatcgaggccccgggaagaccacatgatcacctcaccaccgccaaagccaaaccagaatagttgagtagtagtagctttctgcctagatccggatcctggtcgttttcccccgtgtctcgttgccaagttcaagggaaaagctgagcccaactcgacggcggttgccttcggttttggcatcgtctgtttgatgcctagcgagccagagaatgccacggagaaatctgccccgcagggtagttttctcgagccttgcagaaactcaccccaagtcaacggaacagctaaaaagaaataattttttttcttgttttttcttcccggttacatggaagacacacatgtaccagcacaagctcagacatatactgtgattcgatcccacagtggattatagtgtgttcggcaatgcttgtggctgcagccgccgggctaccacagcctaaaacggctgcagagggcagcagctaaaaatggccgtagccgcagccgcagcagctgtaacaacgagcatttctgatcagcctaggtgtttcttcatattctttgttcctttaaaaaggtcaaacactaaagagaaaaaagagccctctacatcaaatgggcaaattatcaaccacatctaaaaaattaaaatttatacttagttttgaggttttctattgtattttattgtttagcatttatttttaaattacaaataatataggtataaaagtatagccagcattttgcttcgttctcttttccatggctcagcagctaagaaaaattgaaccctaaaattcctacatttttttatcatttttgcaccatttcttattttaaaatcagacacctacatcagtcgaaacccaaatccaaaacagaatagatcaagcgaatgccatcctcctctatttcatttcagctccagcccgctaacaccactccgccaccgcccactataaactgtctggtggtgctcctaagcttgttgaattggcggcgagctgatttcgagtgtgaacctgaactttgctgataaatccattaataatgcatccaagagagaaacgcccagggattttttaggttagctccacagtgtggtgggctaaccggcctaagttcggagcctcacccattttatttatttgatattagatcattccctaatactcacgttctaataatgcatccaaaatggagtggatagcatcaaattagtaccgaatgaccaagacgggttattggctctatgctgcttttttttttttgacaagaaatggaatcctggacggtccaaaattttcccagagggtggcaaaagcctccacggggagtcgactagtcgaggaccatgacagctactgtacaatgccgattgcaaaatgcaaagtcaataaaggattctttctacaaacaatgtcaaaagaggagatatatatgcatcgttgcttggacggggacgcaaaatacttttgaaaagttacatatctgtacaggttaatttcgtacatcatacttactatcagtcatatgctaccaactctggagatgacaatcccttcatttctctaccgtttcctccttcaaattcttatcatctgtgactttgtgtcctggtacctggttacctcatcgagccaacatcaagtaatcacgcttattgccacaattccctagcgtgggactaccttcacatcacggccaccgatccaatcacgtccacgaaccaatcttttttcctttttaaagatcttttcggtggaactcggttttcaacacaatagatatgtgtccctttttttttcgagaacgatatgtgtcctgagcaatgataaagccggtacgtacgatggggacacgaggatgattggtgttgggcagccaccaaattggtgccaaattggcaattaggcttgcgcatgcagtttcgtgcaggaggcagagcaaatctcgtgacaaatgaatgctgaatcgtgcactccgtgcactcgtggacgggggcccgtcggcatgtcggcccatatgccttttcgactcgggacacagttacagcttcctgttccttaaacttgggctacctttccactctttatgagccgttttatcttcgaatccaaatgctactatcaaattctgccaaaacgagaactgggataagcttttgctccataatactggtataatccacatgcaaatgccattcatgattcatctgccaagtccggaagacctgtgtacctcaacccggatatcctggttattaatccattccaaaccttagtaaaacagcgatatactactaataatatgtgtagggtgtcgaggcagccgcgcttttcgccccgaaaaaaggggggtcgcggattcgatccgagtccaagagaatcagacaaagccgtgacagcaacggcctagtgatccaaagctaagtagtcgtagtagtcgtagccatcggcgcggtggtctcatcagaagcggatcgctcgatcgatcgccttatacctccacgtctcgccgtccgtctccaaccccaaccccacccactgatcctgcagctagctagcctcttctcccgtcgcgcggcgaaccaggcgcaatggcggtgcaccactccctcgaggtggccgccgcaggaggcgacggcggcggcggccgatgctacgacgacgacggccacccggcacgcaccggtacggtacacacacgctcgttgtacgtcgtacgtcgttgttccctgaacccagcgcgctgatctgaatccatccatgcgcgcgcggggcgaatggtgtggcgggcgtgcgtgcagggacggtgtggacgtgcgtggcgcacatcatcacggcggtgatcgggtccggggtgctgtcgctggcgtggagcgtggcgaagctggggtgggtggggggaccggcctgcatggcctgcttcgcgctcgtcacctacgtctccgccgcgctgctctccgactgctaccgccgcggcgacgacgacaagggcccccggagccgatcctacatggacgccgtccgcgccttcctcggtaaccaacacacaacacacaaaatcaaaagctagctagcgatttacgacgacgcaaaccaaaccgaacttcgcgttagcgaattcgtggctaaattctgtatactctgtctctgtgtgtgcacatggcgcggcgaattaacgtgctcaggcaagaagcacacctgggcctgcggcttgctccagtacgcgagcctgtacggctgcggcgtcgcgtataccatcaccaccgccactagcatgaggtagtagcagctagcccaagaatcgatgtgcagggagaaacgtgatggatgatgcattatgagttttgcagcgtggtgtttctgtttctgtttctgtttctgtttcttccgttgatttttttcttcgggttttggtgtgttttttgcagggcgatcctgaggtccaactgctaccacacgcacggccacgacgcgccctgcaaatacgggggtagctactacatgctcatgttcggcgcggcgcagctgttcctctccttcataccggacttccacgacatggcgtggctgtcggtcctcgccgcggtcatgtcgttctcctactcgttcatcggcctcggcctcggcctcgccaacacaattggtactctttgctttggtttcagaatccaatctgttcatcctttgaggctttgagctgctcagtcgtagtactagtgcatttacatgttctgtgagactagatggtctgataaattggttctgaacgatgcgcactgcaactaaacatgtagtatgtgaacattgagattatgtaaagttgacaaacctgttgctgttcttcagctaatggaacgatcaaaggaagcataacaggtgctccaacgagaacccctgtgcagaaggtctggcacgtctcgcaggccatcggcgacatcgcattcgcgtacccgtactcattaatcctcttggaaattcaggtgcacacataggagtacatctcatcgatctgaaagtctgaagcctgaagtacaacagtacagtcgctgacgaatttcttccgttacggtctgtgtttgtgcaggacacactgaaggctccaccggccgagaacaagacgatgaagaaggcgtccatcatctcgatcgtcgtcaccaccttcttctacctctgctgcggctgcttcggctacgccgccttcgggagcgacgcccctggcaacctcctcaccggcttcggcttctacgagccctactggctcatcgacttcgccaacgcctgcatcatcctccacctgctcggcggctaccaggtacacagcaccaagaaaccatttcagtgtgcactgatagaactgaaaataatcctgaaacacaatcagtcactgatcgacattgccggatgatgatgaatgaaaaaaaacttggtttgatcaggtgtacagccagccgatataccagttcgcggacaggttcttcgcggagaggtacccggcgagccggttcgtgaacgacttccacacggtgaagctgccgctgctgccgccgtgtcgggtgaacctcctgcgggtgtgcttccggacggtgtacgtggcgagcaccacggcggtggcgctcgccttcccctacttcaacgaggtgctcgcgctgctcggcgccctcaacttctggccgctcgccatctacttccccgtggagatgtacttcatccagcgccatgtcccgcggtggtcgccccggtgggtcgtgctgcagtcgttcagcgtcctctgcctcctcgtcagcgccttcgcgctcgtcggctccatccagggcctcatcagccagaagctaggctaaagatttagcctagcatcctgaatttcggatttgctttttctttgtgtaaccgtaatgggatgagaatgcatttggtggtcgtgtgttgtttgtaacaactggggagcggagctttgtccctggtgaatggcgcgatgaactcatgaacaatagcatagtggtggtggtacattgtgtctgcaggggtcagagggtggtggcactctgtttttcagtgcctttcctcctgtgctgcagagaaactgctcctatatatgtacagaatgtcgtcatattattgccatgatacttggaacggtg</dnaseqindica>|
| + | * <ref name="ref2"> |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001059588.1 RefSeq:Os04g0470700]|
| + | Zhao H, Ma H, Yu L, Wang X, Zhao J. Genome-wide survey and expression analysis |
| − | }}
| + | of amino acid transporter gene family in rice (Oryza sativa L.). PLoS One. |
| − | [[Category:Genes]] | + | 2012;7(11):e49210. doi: 10.1371/journal.pone.0049210. PubMed PMID: 23166615; |
| − | [[Category:Japonica mRNA]]
| + | PubMed Central PMCID: PMC3499563. |
| − | [[Category:Oryza Sativa Japonica Group]] | + | </ref> |
| − | [[Category:Japonica Genes]] | + | |
| − | [[Category:Japonica Chromosome 4]]
| + | </references> |
| − | [[Category:Chromosome 4]]
| + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]] |
