Difference between revisions of "Os06g0228500"

From RiceWiki
Jump to: navigation, search
(Created page with "{{JaponicaGene| GeneName = Os06g0228500| Description = Amino acid/polyamine transporter II family protein| Version = NM_001063743.1 GI:115467217 GeneID:4340559| Length = 2...")
 
 
(2 intermediate revisions by 2 users not shown)
Line 1: Line 1:
{{JaponicaGene|
+
The rice '''''Os06g0228500''''' was reported as '''''OsAAT48''''' in 2012 <ref name="ref1" /> by researchers from China.  
GeneName = Os06g0228500|
 
Description = Amino acid/polyamine transporter II family protein|
 
Version = NM_001063743.1 GI:115467217 GeneID:4340559|
 
Length = 2579 bp|
 
Definition = Oryza sativa Japonica Group Os06g0228500, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
+
==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
+
===Gene Symbol===
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
+
*'''''Os06g0228500''''' '''<=>''' '''''OsAAT48,AAT48'''''
            clade; Ehrhartoideae; Oryzeae; Oryza.
+
===Function===
|
+
* Amino acid transporters (AATs) are the integral membrane proteins which mediate the transport of amino acids across cellular membranes in higher plants, and play an indispensable role in various processes of plant growth and development, including long distance amino acid transport, response to pathogen and abiotic stresses <ref name="ref1" /> <ref name="ref2" /> .
Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
+
===Expression===
AP = Chromosome 6:6677246..6679824|
+
* Diverse expression patterns of '''''OsAAT''''' genes indicated diverse biological functions of the amino acid transporters and the important roles of OsAAT genes in N uptake, metabolism and distribution during N starvation.
CDS = 6677275..6677350,6677806..6678419,6679111..6679662|
+
===Evolution===
GCID = <gbrowseImage1>
+
* The increase in the number of OsAAT members reflects that expansion and rearrangement of the genome may be successfully undergone in the '''''OsAAT''''' family, and these transporters increased in rice might play an important role in order to adapt to specific functions.
name=NC_008399:6677246..6679824
+
<br>
source=RiceChromosome06
+
'''''You can also add sub-section(s) at will.'''''
preset=GeneLocation
+
 
</gbrowseImage1>|
+
==Labs working on this gene==
GSID = <gbrowseImage2>
+
* National Key Laboratory of Crop Genetic Improvement,Huazhong Agricultural University, Wuhan 430070, China
name=NC_008399:6677246..6679824
+
 
source=RiceChromosome06
+
==References==
preset=GeneLocation
+
<references>
</gbrowseImage2>|
+
* <ref name="ref1">
CDNA = <cdnaseq>atggaaaccaacactcctccaaagtctgggacaagctttctcaagacttgcttcaatggtgtcaatgccctctcaggtgttgggatactatccatgccttacgcattgtcccagggaggatggctgagcctagcaatcttcataaccatagcagcgatctgcttctacacggggatcctcctgcagcgatgcatcgactccagctccctcgtcaagacctacccggacatcggcgagctggcgttcggccggaagggcaggatcgccgtcgccgccttcatgtatctcgagctctacctcgtcgccatcgacttcctcatcctggagggggacaacctggagaagctgttcccgaacgcgagcttcttctcctccttccacaggatcgccggcgggacgaggcaagggttcgtgctgctgttcgcgctgctcgtgctgcccacgacgtggttccggagcctcgacctcctggcgtacgtctccctgggcggcgtcctggcgtccgccatcctcgtcgcgtccgtgctctgggtcggcgccgccgacggcgtcgggttccgcgagggcggcgtggcggtgaggtggggtggcgtcccgaccgccatgagcctgtacgcgttctgcttcagtggccatgcggttttccccatgatttataccggcatgaggaacaggagaatgtttccacatgtgctgctcatctgcttcatcatctgcaccctcgcctacggcgtgatgggcgtcatcggctacctcatgtacggcggctcgctccggtcgcaggtgacgctcaacctgccggcgaggaagctgagctccagcatcgccatctacacgacgctcatcaaccccttcaccaagttcgccctcctcatcaccccgatcgccgaggccatcgagggcgtcctcggcctcggcaccgccaccaccggcggcaagccggcgcagtacagggccgcggccgtgagcgtgtcggtgaggacggcgctggtggtgagcaccacggcggtggcgctcgccgtgcccttcttcgcctacgtggtggcgctcaccggctcgttcctcagcgccaccgcgacgatgctgctgccgtgcgcgtgctacctccggatcagctccagggcctccgggaagctgggggtgctcgagatcgtggcttgcgtggggatcatcgtgcttgggttaggagtgatcgtgataggcacttacagctcgctgaaacagattgtgcagagcttctga</cdnaseq>|
+
Lu, Y., Song, Z., Lü, K., Lian, X., & Cai, H. (2012). Molecular characterization, expression and functional analysis of the amino acid transporter gene family (OsAATs) in rice. Acta physiologiae plantarum, 34(5), 1943-1962.
AA = <aaseq>METNTPPKSGTSFLKTCFNGVNALSGVGILSMPYALSQGGWLSL                    AIFITIAAICFYTGILLQRCIDSSSLVKTYPDIGELAFGRKGRIAVAAFMYLELYLVA                    IDFLILEGDNLEKLFPNASFFSSFHRIAGGTRQGFVLLFALLVLPTTWFRSLDLLAYV                    SLGGVLASAILVASVLWVGAADGVGFREGGVAVRWGGVPTAMSLYAFCFSGHAVFPMI                    YTGMRNRRMFPHVLLICFIICTLAYGVMGVIGYLMYGGSLRSQVTLNLPARKLSSSIA                    IYTTLINPFTKFALLITPIAEAIEGVLGLGTATTGGKPAQYRAAAVSVSVRTALVVST                    TAVALAVPFFAYVVALTGSFLSATATMLLPCACYLRISSRASGKLGVLEIVACVGIIV                    LGLGVIVIGTYSSLKQIVQSF</aaseq>|
+
</ref>
DNA = <dnaseqindica>30..105#561..1174#1866..2417#aagagcactcaggagttctctgaattctgatggaaaccaacactcctccaaagtctgggacaagctttctcaagacttgcttcaatggtgtcaatgccctctcaggttttatttcttccatcctgcctctcgtgatcttaatcaagctaagacatcaagtactacctgatgttttatgttgttaagaaagatgccatatattttctttatttaacattataacatactaaggtaattttaccatatttgaaaatgaaccggaagataccatatgttctaatataaaacttgttacctttatatactagataccaaattttatttttatctttttacaagtgctgtctcgaaaaccgtaaaattcaccacgtactaaaactaacttaaaatgttgggaaagtgatttcatctgtcgaggggatattctcttgtttcgtacatgtcacctaaatagtcataaaaaaatttgacaaaattaatatgaaatatatcactccacaaatatgcaagttaaaatttaacttctaaaatgtttgtttctgtttttttcttttcttcaggtgttgggatactatccatgccttacgcattgtcccagggaggatggctgagcctagcaatcttcataaccatagcagcgatctgcttctacacggggatcctcctgcagcgatgcatcgactccagctccctcgtcaagacctacccggacatcggcgagctggcgttcggccggaagggcaggatcgccgtcgccgccttcatgtatctcgagctctacctcgtcgccatcgacttcctcatcctggagggggacaacctggagaagctgttcccgaacgcgagcttcttctcctccttccacaggatcgccggcgggacgaggcaagggttcgtgctgctgttcgcgctgctcgtgctgcccacgacgtggttccggagcctcgacctcctggcgtacgtctccctgggcggcgtcctggcgtccgccatcctcgtcgcgtccgtgctctgggtcggcgccgccgacggcgtcgggttccgcgagggcggcgtggcggtgaggtggggtggcgtcccgaccgccatgagcctgtacgcgttctgcttcagtggccatgcggttttccccatgatttataccggcatgaggaacaggagaatgtttccacatgtaagtaaagcagaagtttgtttcttttacagtcttatataaagggtaattttaccatctttgaaaaaaataccgaccacactttctagcgtaaaatttagtacatatagatactaagtacgtcaaggtataaaaaaattaatataaaatttaggtacccgaggtattttttatggaccataaaacttttgtatataaaagcacagtaatcctctccccaccctacacaggaggtcgtccgctccttcgtgtttgcgtaactagtataggatttagtaatttatccttaattcatacacctagctaaatctctaattatatggatgcggcctgttgcaaatcacggatatattactggtaaataatagtagaagtgttagttgtaaagcactacaactatctgctgaaaactagtactactaatgatctcaggtctcagccaggcaaactgtttggataattttgctttacagtcagtagtacaaaatgtttaacctttttgactggtagtgtatgataaaaagttatgttgttgcccatgcaaattttaaccacggtaaccttgtcaaactttccaattgcataaagcattgctatatatgctaattccgtctcaatcgtgtgctttaattgagtttattaacaactaatcaataactttattttttctaccaacttaaccaaatcccaggtgctgctcatctgcttcatcatctgcaccctcgcctacggcgtgatgggcgtcatcggctacctcatgtacggcggctcgctccggtcgcaggtgacgctcaacctgccggcgaggaagctgagctccagcatcgccatctacacgacgctcatcaaccccttcaccaagttcgccctcctcatcaccccgatcgccgaggccatcgagggcgtcctcggcctcggcaccgccaccaccggcggcaagccggcgcagtacagggccgcggccgtgagcgtgtcggtgaggacggcgctggtggtgagcaccacggcggtggcgctcgccgtgcccttcttcgcctacgtggtggcgctcaccggctcgttcctcagcgccaccgcgacgatgctgctgccgtgcgcgtgctacctccggatcagctccagggcctccgggaagctgggggtgctcgagatcgtggcttgcgtggggatcatcgtgcttgggttaggagtgatcgtgataggcacttacagctcgctgaaacagattgtgcagagcttctgatcatttatgggcaaaggtagtaggagatgagcaattgggatcagctactgaaaattgacatatactagtcaattcgataccactgattaggacaggtggtgtcaaccatgatgttatgcataaatcacttgagaaagaaatccatatgccgtgtattcaggt</dnaseqindica>|
+
* <ref name="ref2">
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001063743.1 RefSeq:Os06g0228500]|
+
Zhao H, Ma H, Yu L, Wang X, Zhao J. Genome-wide survey and expression analysis
}}
+
of amino acid transporter gene family in rice (Oryza sativa L.). PLoS One.
[[Category:Genes]]
+
2012;7(11):e49210. doi: 10.1371/journal.pone.0049210. PubMed PMID: 23166615;
[[Category:Japonica mRNA]]
+
PubMed Central PMCID: PMC3499563.
[[Category:Oryza Sativa Japonica Group]]
+
</ref>
[[Category:Japonica Genes]]
+
 
[[Category:Japonica Chromosome 6]]
+
</references>
[[Category:Chromosome 6]]
+
 
 +
==Structured Information==
 +
    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 6]]

Latest revision as of 06:28, 25 February 2017

The rice Os06g0228500 was reported as OsAAT48 in 2012 [1] by researchers from China.

Annotated Information

Gene Symbol

  • Os06g0228500 <=> OsAAT48,AAT48

Function

  • Amino acid transporters (AATs) are the integral membrane proteins which mediate the transport of amino acids across cellular membranes in higher plants, and play an indispensable role in various processes of plant growth and development, including long distance amino acid transport, response to pathogen and abiotic stresses [1] [2] .

Expression

  • Diverse expression patterns of OsAAT genes indicated diverse biological functions of the amino acid transporters and the important roles of OsAAT genes in N uptake, metabolism and distribution during N starvation.

Evolution

  • The increase in the number of OsAAT members reflects that expansion and rearrangement of the genome may be successfully undergone in the OsAAT family, and these transporters increased in rice might play an important role in order to adapt to specific functions.


You can also add sub-section(s) at will.

Labs working on this gene

  • National Key Laboratory of Crop Genetic Improvement,Huazhong Agricultural University, Wuhan 430070, China

References

  1. 1.0 1.1 Lu, Y., Song, Z., Lü, K., Lian, X., & Cai, H. (2012). Molecular characterization, expression and functional analysis of the amino acid transporter gene family (OsAATs) in rice. Acta physiologiae plantarum, 34(5), 1943-1962.
  2. Zhao H, Ma H, Yu L, Wang X, Zhao J. Genome-wide survey and expression analysis of amino acid transporter gene family in rice (Oryza sativa L.). PLoS One. 2012;7(11):e49210. doi: 10.1371/journal.pone.0049210. PubMed PMID: 23166615; PubMed Central PMCID: PMC3499563.

Structured Information