Difference between revisions of "Os07g0231400"

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Please input one-sentence summary here.
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The rice '''''Os07g0231400''''' was reported as '''''OsAAT62''''' in 2012 <ref name="ref1" /> by researchers from China.  
  
 
==Annotated Information==
 
==Annotated Information==
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===Gene Symbol===
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*'''''Os07g0231400''''' '''<=>''' '''''OsAAT62,AAT62'''''
 
===Function===
 
===Function===
Please input function information here.
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* Amino acid transporters (AATs) are the integral membrane proteins which mediate the transport of amino acids across cellular membranes in higher plants, and play an indispensable role in various processes of plant growth and development, including long distance amino acid transport, response to pathogen and abiotic stresses <ref name="ref1" /> <ref name="ref2" /> .
 
 
 
===Expression===
 
===Expression===
Please input expression information here.
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* Diverse expression patterns of '''''OsAAT''''' genes indicated diverse biological functions of the amino acid transporters and the important roles of OsAAT genes in N uptake, metabolism and distribution during N starvation.
 
 
 
===Evolution===
 
===Evolution===
Please input evolution information here.
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* The increase in the number of OsAAT members reflects that expansion and rearrangement of the genome may be successfully undergone in the '''''OsAAT''''' family, and these transporters increased in rice might play an important role in order to adapt to specific functions.
 
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<br>
You can also add sub-section(s) at will.
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'''''You can also add sub-section(s) at will.'''''
  
 
==Labs working on this gene==
 
==Labs working on this gene==
Please input related labs here.
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* National Key Laboratory of Crop Genetic Improvement,Huazhong Agricultural University, Wuhan 430070, China
  
 
==References==
 
==References==
Please input cited references here.
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<references>
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* <ref name="ref1">
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Lu, Y., Song, Z., Lü, K., Lian, X., & Cai, H. (2012). Molecular characterization, expression and functional analysis of the amino acid transporter gene family (OsAATs) in rice. Acta physiologiae plantarum, 34(5), 1943-1962.
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</ref>
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* <ref name="ref2">
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Zhao H, Ma H, Yu L, Wang X, Zhao J. Genome-wide survey and expression analysis
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of amino acid transporter gene family in rice (Oryza sativa L.). PLoS One.
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2012;7(11):e49210. doi: 10.1371/journal.pone.0049210. PubMed PMID: 23166615;
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PubMed Central PMCID: PMC3499563.
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</ref>
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</references>
  
 
==Structured Information==
 
==Structured Information==
{{JaponicaGene|
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[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 7]]
GeneName = Os07g0231400|
 
Description = Amino acid/polyamine transporter II family protein|
 
Version = NM_001065768.1 GI:115471268 GeneID:4342775|
 
Length = 2366 bp|
 
Definition = Oryza sativa Japonica Group Os07g0231400, complete gene.|
 
Source = Oryza sativa Japonica Group
 
 
 
  ORGANISM  Oryza sativa Japonica Group
 
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
 
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
 
            clade; Ehrhartoideae; Oryzeae; Oryza.
 
|
 
Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|
 
AP = Chromosome 7:7342793..7345158|
 
CDS = 7342831..7342842,7343601..7344245,7344515..7344907|
 
GCID = <gbrowseImage1>
 
name=NC_008400:7342793..7345158
 
source=RiceChromosome07
 
preset=GeneLocation
 
</gbrowseImage1>|
 
GSID = <gbrowseImage2>
 
name=NC_008400:7342793..7345158
 
source=RiceChromosome07
 
preset=GeneLocation
 
</gbrowseImage2>|
 
CDNA = <cdnaseq>atgctcctcctcgttgactgcagagataaattggaagagaaagaatctgaagaaacctaccatggtcactatacatatggtgatttgggtgaaaagtgttttggcactataggtcgatgcttgacagaaatcctcatccttgtttcccaagcaggtggatctgtagcttatctaatattcattggccaaaatcttcattctgtcttcagccagttgatgtcaccagctgccttcatctttgccattctcctgcctatgcaaatcgctctatcattcatccgttcactatcttctctctccccattcagcatatttgcagacgtctgcaatgttcttgctatggcaattgttatcaaagaggatcttcagctttttgatcacccatttgcgaatagaagtgctttcaatggactttgggcgataccattcacttttggagttgcggtcttctgcttcgaaggattcagtatgactttggcactagaatcatcaatggcagaacggagaaaattccgctgggtactttctcaagcagttgtcggtatcataattgtctatgcatgttttggagtttgtggttacttagcctatggggaggccactaaagacatcataacacttaatcttcccaatagttggtcttctgctgccgttaaggttggtctttgcatagcactggtattcacatttccagtcatgatgcacccaatccacgagattgtcgaggaaagattccaatcaagtggatgtttcccgaagctctcgcacaaggttcgcggggctgaatgggtgggcctgcactcaagccgcatcgtcatggtaactatcctgtctgtggtggcatccttcatacctgcgttcgggtccttcatctcctttgtcgggagcacggtttgcgcgctgctctccttcgtgctgcctacgatcttccatctgagcattgtgggttcctcgatgagtccgtggcgacgctggggggactacggtttccttctcttcggccttggttttgcgggctacgggctcattagggctctcttctcacattga</cdnaseq>|
 
AA = <aaseq>MLLLVDCRDKLEEKESEETYHGHYTYGDLGEKCFGTIGRCLTEI                    LILVSQAGGSVAYLIFIGQNLHSVFSQLMSPAAFIFAILLPMQIALSFIRSLSSLSPF                    SIFADVCNVLAMAIVIKEDLQLFDHPFANRSAFNGLWAIPFTFGVAVFCFEGFSMTLA                    LESSMAERRKFRWVLSQAVVGIIIVYACFGVCGYLAYGEATKDIITLNLPNSWSSAAV                    KVGLCIALVFTFPVMMHPIHEIVEERFQSSGCFPKLSHKVRGAEWVGLHSSRIVMVTI                    LSVVASFIPAFGSFISFVGSTVCALLSFVLPTIFHLSIVGSSMSPWRRWGDYGFLLFG                    LGFAGYGLIRALFSH</aaseq>|
 
DNA = <dnaseqindica>39..50#809..1453#1723..2115#tcggcgtcgccgccgccggatgcgccacgctctactgcatgctcctcctcgtgagttgcctcaccaccaccaccaccaccaccactactactacttcagtagacttcttcccctttttgcttgattctgtttgtctctgtttgttaatcgaatctctctctctgtttttttttgggtgggggagggaaatggtgttgtgctgtaatcaatcaaaaactctggaactgaaagtataataattgttggttgttgcaattatagtgctagctgtcgcagtcaatcagcgcgtactctggttttggattagcatgcatttttagatgaggttactatgcccaatttttgtttcatttgacatcgcaaatttggttccaataaacacagaagtatctcctattcatagtgattcagtagaaattggaggacctcaaaaccaaagtaaggggcgccagtatatgtatgtcttatcatcatgattcttctctctccatattctattatacttatgtattatttgattttcgtttagcatgttgatctagttcaactgggttttttaatgtgaaatcaaagtgtctataatgttcctttcagtcttgcttaacattgcctggtagaattttgattgtaacatcaataaattataaacaggatgcgtaagtctacaatgttctttctaccttgtgttgaatttggtttaacataagtgaattaaacaggatctgtaattgtaaacgctagtttcataactttattacctgcttcatcttcttacgaaaattacttgcttttctttttcaacatgaaggttgactgcagagataaattggaagagaaagaatctgaagaaacctaccatggtcactatacatatggtgatttgggtgaaaagtgttttggcactataggtcgatgcttgacagaaatcctcatccttgtttcccaagcaggtggatctgtagcttatctaatattcattggccaaaatcttcattctgtcttcagccagttgatgtcaccagctgccttcatctttgccattctcctgcctatgcaaatcgctctatcattcatccgttcactatcttctctctccccattcagcatatttgcagacgtctgcaatgttcttgctatggcaattgttatcaaagaggatcttcagctttttgatcacccatttgcgaatagaagtgctttcaatggactttgggcgataccattcacttttggagttgcggtcttctgcttcgaaggattcagtatgactttggcactagaatcatcaatggcagaacggagaaaattccgctgggtactttctcaagcagttgtcggtatcataattgtctatgcatgttttggagtttgtggttacttagcctatggggaggccactaaagacatcataacacttaatcttcccaatagttggtcttctgctgccgttaaggttagtgcactagtcataatttatttgatgttgtttcttttgaagtaaatgtcagcatgtactttgtgcggttgcaacttgagacttcattattttatatttggagatatgaatataagatcatgaactacctgacagattttgcctgagatctgctgtttggaaattaaaatatttgggtcactttcatcaaattggacttaaaaaatagcaattagcactgatttaggtatgtaatggatcctgacagtttgaaaatctgctgacaggttggtctttgcatagcactggtattcacatttccagtcatgatgcacccaatccacgagattgtcgaggaaagattccaatcaagtggatgtttcccgaagctctcgcacaaggttcgcggggctgaatgggtgggcctgcactcaagccgcatcgtcatggtaactatcctgtctgtggtggcatccttcatacctgcgttcgggtccttcatctcctttgtcgggagcacggtttgcgcgctgctctccttcgtgctgcctacgatcttccatctgagcattgtgggttcctcgatgagtccgtggcgacgctggggggactacggtttccttctcttcggccttggttttgcgggctacgggctcattagggctctcttctcacattgactgatgatccaaatggcaaagaaccacaatgcaggattcaactgcagaatatgtccaatctgggaagtgggaacgaaggcattgagatgagatgtatttactgcctttgttgttcagggtgtaatatatgtgatgccaagatctaggattatgtgataatgatcttttgttggtgtaagttatatgtatattaccagtgtcacgcagtgacgcaatggatcatgctatccaatcaattttcatatgttctt</dnaseqindica>|
 
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001065768.1 RefSeq:Os07g0231400]|
 
}}
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Oryza Sativa Japonica Group]]
 
[[Category:Japonica Genes]]
 
[[Category:Japonica Chromosome 7]]
 
[[Category:Chromosome 7]]
 

Latest revision as of 06:37, 25 February 2017

The rice Os07g0231400 was reported as OsAAT62 in 2012 [1] by researchers from China.

Annotated Information

Gene Symbol

  • Os07g0231400 <=> OsAAT62,AAT62

Function

  • Amino acid transporters (AATs) are the integral membrane proteins which mediate the transport of amino acids across cellular membranes in higher plants, and play an indispensable role in various processes of plant growth and development, including long distance amino acid transport, response to pathogen and abiotic stresses [1] [2] .

Expression

  • Diverse expression patterns of OsAAT genes indicated diverse biological functions of the amino acid transporters and the important roles of OsAAT genes in N uptake, metabolism and distribution during N starvation.

Evolution

  • The increase in the number of OsAAT members reflects that expansion and rearrangement of the genome may be successfully undergone in the OsAAT family, and these transporters increased in rice might play an important role in order to adapt to specific functions.


You can also add sub-section(s) at will.

Labs working on this gene

  • National Key Laboratory of Crop Genetic Improvement,Huazhong Agricultural University, Wuhan 430070, China

References

  1. 1.0 1.1 Lu, Y., Song, Z., Lü, K., Lian, X., & Cai, H. (2012). Molecular characterization, expression and functional analysis of the amino acid transporter gene family (OsAATs) in rice. Acta physiologiae plantarum, 34(5), 1943-1962.
  2. Zhao H, Ma H, Yu L, Wang X, Zhao J. Genome-wide survey and expression analysis of amino acid transporter gene family in rice (Oryza sativa L.). PLoS One. 2012;7(11):e49210. doi: 10.1371/journal.pone.0049210. PubMed PMID: 23166615; PubMed Central PMCID: PMC3499563.

Structured Information