Difference between revisions of "Os12g0181500"

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(Created page with "{{JaponicaGene| GeneName = Os12g0181500| Description = Similar to Amino acid carrier (Fragment)| Version = NM_001072848.1 GI:115487657 GeneID:4351675| Length = 1927 bp| D...")
 
 
(One intermediate revision by one other user not shown)
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{{JaponicaGene|
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The rice '''''Os12g0181500''''' was reported as '''''OsAAT70''''' in 2012 <ref name="ref1" /> by researchers from China.  
GeneName = Os12g0181500|
 
Description = Similar to Amino acid carrier (Fragment)|
 
Version = NM_001072848.1 GI:115487657 GeneID:4351675|
 
Length = 1927 bp|
 
Definition = Oryza sativa Japonica Group Os12g0181500, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Gene Symbol===
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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*'''''Os12g0181500''''' '''<=>''' '''''OsAAT70,AAT70'''''
            clade; Ehrhartoideae; Oryzeae; Oryza.
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===Function===
|
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* Amino acid transporters (AATs) are the integral membrane proteins which mediate the transport of amino acids across cellular membranes in higher plants, and play an indispensable role in various processes of plant growth and development, including long distance amino acid transport, response to pathogen and abiotic stresses <ref name="ref1" /> <ref name="ref2" /> .
Chromosome = [[:category:Japonica Chromosome 12|Chromosome 12]]|
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===Expression===
AP = Chromosome 12:4119982..4121908|
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* Diverse expression patterns of '''''OsAAT''''' genes indicated diverse biological functions of the amino acid transporters and the important roles of OsAAT genes in N uptake, metabolism and distribution during N starvation.
CDS = 4120077..4120725,4120830..4120972,4121072..4121707|
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===Evolution===
GCID = <gbrowseImage1>
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* The increase in the number of OsAAT members reflects that expansion and rearrangement of the genome may be successfully undergone in the '''''OsAAT''''' family, and these transporters increased in rice might play an important role in order to adapt to specific functions.
name=NC_008405:4119982..4121908
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<br>
source=RiceChromosome12
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'''''You can also add sub-section(s) at will.'''''
preset=GeneLocation
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</gbrowseImage1>|
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==Labs working on this gene==
GSID = <gbrowseImage2>
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* National Key Laboratory of Crop Genetic Improvement,Huazhong Agricultural University, Wuhan 430070, China
name=NC_008405:4119982..4121908
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source=RiceChromosome12
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==References==
preset=GeneLocation
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<references>
</gbrowseImage2>|
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* <ref name="ref1">
CDNA = <cdnaseq>atggcgtcggggcagaaggtggtgaagccgatggaggtgtcggtggaggccgggaacgccggggaggcggcgtggctggacgacgacgggcgggcgcggcggacgggcacgttctggacggcgagcgcgcacatcatcaccgccgtcatcggctccggcgtgctgtcgctggcgtgggcgatcgcgcagctgggctgggtggccggtcccgccgtgatgctcctcttcgccttcgtcatctactacacctccaccctcctcgccgagtgctaccgcaccggcgacccggccaccggcaagcgaaactacacctacatggacgccgtgcgcgccaacctcggcggcgccaaggtcaccttctgcggcgtcatccagtacgccaacctcgtcggcgtcgccatcggctacaccatcgcgtcgtccatcagcatgcgcgccatcaggagggccggctgcttccaccacaacggccatggtgacccgtgccgcagctccagcaacccttacatgatcctcttcggcgtcgtgcagatcgtcttctcgcagatcccggacttcgaccagatttggtggctgtccatcgtcgccgccgtcatgtccttcacctactccggcatcggcctctccctcggcatcgtccagacaatctccaatggcgggatccagggcagcctcaccggaatcagcatcggcgtcggcgtcagctcaacgcagaaggtgtggcgcagcctgcaggcattcggcgacatcgccttcgcatactccttctccaacatcctcatcgagatccaagacacgatcaaggcgccgccgccgtcggaggcgaaggtgatgaagagcgcgacgaggctgagcgtggcgacgaccacggtgttctacatgctgtgcgggtgcatgggctacgcggcgttcggcgacgcggcgcccgacaacctcctcacgggcttcggcttctacgagcccttctggctgctcgacgtcgccaacgtcgccatcgtcgtgcacctcgtcggcgcctaccaggtgttcgtccagccaatcttcgccttcgtcgagcgctgggcctcccgccggtggccggacagcgcgttcatcgccaaggagctccgcgtggggcccttcgcgctcagcctcttccgcctgacgtggcgctcggcgttcgtctgcctcaccacagtcgtcgccatgctcctccccttcttcggcaacgtggtgggtctcctcggcgccgtctccttctggccgctcaccgtctacttccccgtcgagatgtacatcgcgcagcgcggcgtgccacgtggcagcgcgaggtgggtctcgctcaagacgctcagcgcgtgctgcctcgtcgtctccatcgccgccgctgcgggctccattgctgacgtcatcgacgctctcaaggtgtacagaccgttcagcggatga</cdnaseq>|
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Lu, Y., Song, Z., Lü, K., Lian, X., & Cai, H. (2012). Molecular characterization, expression and functional analysis of the amino acid transporter gene family (OsAATs) in rice. Acta physiologiae plantarum, 34(5), 1943-1962.
AA = <aaseq>MASGQKVVKPMEVSVEAGNAGEAAWLDDDGRARRTGTFWTASAH                    IITAVIGSGVLSLAWAIAQLGWVAGPAVMLLFAFVIYYTSTLLAECYRTGDPATGKRN                    YTYMDAVRANLGGAKVTFCGVIQYANLVGVAIGYTIASSISMRAIRRAGCFHHNGHGD                    PCRSSSNPYMILFGVVQIVFSQIPDFDQIWWLSIVAAVMSFTYSGIGLSLGIVQTISN                    GGIQGSLTGISIGVGVSSTQKVWRSLQAFGDIAFAYSFSNILIEIQDTIKAPPPSEAK                    VMKSATRLSVATTTVFYMLCGCMGYAAFGDAAPDNLLTGFGFYEPFWLLDVANVAIVV                    HLVGAYQVFVQPIFAFVERWASRRWPDSAFIAKELRVGPFALSLFRLTWRSAFVCLTT                    VVAMLLPFFGNVVGLLGAVSFWPLTVYFPVEMYIAQRGVPRGSARWVSLKTLSACCLV                    VSIAAAAGSIADVIDALKVYRPFSG</aaseq>|
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</ref>
DNA = <dnaseqindica>96..744#849..991#1091..1726#aaacactcgagctcacacctgctcgatcaaaatcctccaacaactcgatccattcgcagtagctgcgagctctgagcggcggcgaggtgtccgacatggcgtcggggcagaaggtggtgaagccgatggaggtgtcggtggaggccgggaacgccggggaggcggcgtggctggacgacgacgggcgggcgcggcggacgggcacgttctggacggcgagcgcgcacatcatcaccgccgtcatcggctccggcgtgctgtcgctggcgtgggcgatcgcgcagctgggctgggtggccggtcccgccgtgatgctcctcttcgccttcgtcatctactacacctccaccctcctcgccgagtgctaccgcaccggcgacccggccaccggcaagcgaaactacacctacatggacgccgtgcgcgccaacctcggcggcgccaaggtcaccttctgcggcgtcatccagtacgccaacctcgtcggcgtcgccatcggctacaccatcgcgtcgtccatcagcatgcgcgccatcaggagggccggctgcttccaccacaacggccatggtgacccgtgccgcagctccagcaacccttacatgatcctcttcggcgtcgtgcagatcgtcttctcgcagatcccggacttcgaccagatttggtggctgtccatcgtcgccgccgtcatgtccttcacctactccggcatcggcctctccctcggcatcgtccagacaatctgtacgtccattaattcttctgtcacatacagataatctagttctttaatttgtctttgctgctcgagatgcatatgctgaccgtgatgagctgtgaatttgcagccaatggcgggatccagggcagcctcaccggaatcagcatcggcgtcggcgtcagctcaacgcagaaggtgtggcgcagcctgcaggcattcggcgacatcgccttcgcatactccttctccaacatcctcatcgagatccaagtgagtgagactcactacaaagttaatttgctctgtttgaacgaacaaggttaatttgctcatcgatcgctgcttgctctgttttgttttgttgttcaggacacgatcaaggcgccgccgccgtcggaggcgaaggtgatgaagagcgcgacgaggctgagcgtggcgacgaccacggtgttctacatgctgtgcgggtgcatgggctacgcggcgttcggcgacgcggcgcccgacaacctcctcacgggcttcggcttctacgagcccttctggctgctcgacgtcgccaacgtcgccatcgtcgtgcacctcgtcggcgcctaccaggtgttcgtccagccaatcttcgccttcgtcgagcgctgggcctcccgccggtggccggacagcgcgttcatcgccaaggagctccgcgtggggcccttcgcgctcagcctcttccgcctgacgtggcgctcggcgttcgtctgcctcaccacagtcgtcgccatgctcctccccttcttcggcaacgtggtgggtctcctcggcgccgtctccttctggccgctcaccgtctacttccccgtcgagatgtacatcgcgcagcgcggcgtgccacgtggcagcgcgaggtgggtctcgctcaagacgctcagcgcgtgctgcctcgtcgtctccatcgccgccgctgcgggctccattgctgacgtcatcgacgctctcaaggtgtacagaccgttcagcggatgattggaacgtgaggggcacgtgtgctcgttaaattatttcttactatctctgtaccaaaatatagcaaactagtataaataggacgaaattcgggtagttctcaggtacgaattcatcgtactaggaaatatctcacattgtattaagttgctatattttgggtcagcattagtacaatattacacaaagaggaaaaaaaag</dnaseqindica>|
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* <ref name="ref2">
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001072848.1 RefSeq:Os12g0181500]|
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Zhao H, Ma H, Yu L, Wang X, Zhao J. Genome-wide survey and expression analysis
}}
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of amino acid transporter gene family in rice (Oryza sativa L.). PLoS One.
[[Category:Genes]]
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2012;7(11):e49210. doi: 10.1371/journal.pone.0049210. PubMed PMID: 23166615;
[[Category:Japonica mRNA]]
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PubMed Central PMCID: PMC3499563.
[[Category:Oryza Sativa Japonica Group]]
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</ref>
[[Category:Japonica Genes]]
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[[Category:Japonica Chromosome 12]]
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</references>
[[Category:Chromosome 12]]
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 +
==Structured Information==
 +
    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 12]]

Latest revision as of 06:44, 25 February 2017

The rice Os12g0181500 was reported as OsAAT70 in 2012 [1] by researchers from China.

Annotated Information

Gene Symbol

  • Os12g0181500 <=> OsAAT70,AAT70

Function

  • Amino acid transporters (AATs) are the integral membrane proteins which mediate the transport of amino acids across cellular membranes in higher plants, and play an indispensable role in various processes of plant growth and development, including long distance amino acid transport, response to pathogen and abiotic stresses [1] [2] .

Expression

  • Diverse expression patterns of OsAAT genes indicated diverse biological functions of the amino acid transporters and the important roles of OsAAT genes in N uptake, metabolism and distribution during N starvation.

Evolution

  • The increase in the number of OsAAT members reflects that expansion and rearrangement of the genome may be successfully undergone in the OsAAT family, and these transporters increased in rice might play an important role in order to adapt to specific functions.


You can also add sub-section(s) at will.

Labs working on this gene

  • National Key Laboratory of Crop Genetic Improvement,Huazhong Agricultural University, Wuhan 430070, China

References

  1. 1.0 1.1 Lu, Y., Song, Z., Lü, K., Lian, X., & Cai, H. (2012). Molecular characterization, expression and functional analysis of the amino acid transporter gene family (OsAATs) in rice. Acta physiologiae plantarum, 34(5), 1943-1962.
  2. Zhao H, Ma H, Yu L, Wang X, Zhao J. Genome-wide survey and expression analysis of amino acid transporter gene family in rice (Oryza sativa L.). PLoS One. 2012;7(11):e49210. doi: 10.1371/journal.pone.0049210. PubMed PMID: 23166615; PubMed Central PMCID: PMC3499563.

Structured Information