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| − | {{JaponicaGene|
| + | The rice '''''Os12g0485600''''' was reported as '''''OsAAT78''''' in 2012 <ref name="ref1" /> by researchers from China. |
| − | GeneName = Os12g0485600|
| |
| − | Description = Amino acid/polyamine transporter II family protein|
| |
| − | Version = NM_001073315.1 GI:115488591 GeneID:4352231|
| |
| − | Length = 4143 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os12g0485600, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os12g0485600''''' '''<=>''' '''''OsAAT78,AAT78''''' |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | ===Function=== |
| − | |
| + | * Amino acid transporters (AATs) are the integral membrane proteins which mediate the transport of amino acids across cellular membranes in higher plants, and play an indispensable role in various processes of plant growth and development, including long distance amino acid transport, response to pathogen and abiotic stresses <ref name="ref1" /> <ref name="ref2" /> . |
| − | Chromosome = [[:category:Japonica Chromosome 12|Chromosome 12]]|
| + | ===Expression=== |
| − | AP = Chromosome 12:18123944..18128086|
| + | * Diverse expression patterns of '''''OsAAT''''' genes indicated diverse biological functions of the amino acid transporters and the important roles of OsAAT genes in N uptake, metabolism and distribution during N starvation. |
| − | CDS = 18124098..18124585,18124689..18124821,18124924..18125351,18125908..18126041,18127393..18127736<br>|
| + | ===Evolution=== |
| − | GCID = <gbrowseImage1>
| + | * The increase in the number of OsAAT members reflects that expansion and rearrangement of the genome may be successfully undergone in the '''''OsAAT''''' family, and these transporters increased in rice might play an important role in order to adapt to specific functions. |
| − | name=NC_008405:18123944..18128086
| + | <br> |
| − | source=RiceChromosome12
| + | '''''You can also add sub-section(s) at will.''''' |
| − | preset=GeneLocation
| + | |
| − | </gbrowseImage1>|
| + | ==Labs working on this gene== |
| − | GSID = <gbrowseImage2>
| + | * National Key Laboratory of Crop Genetic Improvement,Huazhong Agricultural University, Wuhan 430070, China |
| − | name=NC_008405:18123944..18128086
| + | |
| − | source=RiceChromosome12
| + | ==References== |
| − | preset=GeneLocation
| + | <references> |
| − | </gbrowseImage2>| | + | * <ref name="ref1"> |
| − | CDNA = <cdnaseq>atggcgatggcggtggagggtgcgggtgcgggggtggtggtgagcgagccggaggtggtgtcgataccgccgacgccgagggggatgtcgacgccggatgggacggcgacgccgccgccggcggcggggaggggcgcggcgacgccggcgaggcgggtggtggaggggctgcggggttacctggaggaggtgggacacctgacgcggctgaacccgcaggacgcgtggctgcccatcaccgagtcccgcagcggcaacgcccgctacgccgccttccacaccctcaacgccggcctcggcttccaggccctcctcctccccctcgccttccccgccctcggatggagctggggaataatatcacttactgttgcttatttctggcaactgtacacactctggattcttgtcaagctccatgaagctgtaccaggaaggaggtacaacagatatgtggagcttgcacaagctgcatttggagaaaaactgggaatgtggctatctcttttcccaactatttatctgtcggcaggcagtgcaactgcgttgatccttgttggaggggagaccatgaagctcttttaccaaatagtttgcggcccaatctgttcaccgagtccgatttcgacgatcgaatggtacttggtgttcacatccttggccatagtcctttcccagcttccgaatctcaactcgatagccggcgtttcactcatcggtggcaccaccgcaataacatactgtaccatgtcctgggttctctcggtcagccaaccgcagcctccaacagtctcttatgaaccacaagcatacacttctcttggttcatctttgttctccaccttgaatgctcttggaataatagcatttgcattcagggggcacaatcttgcacttgaaatacaggcgacaatgccgtcgactttcaaacatccagcacatgtcccgatgtggcgcggggccaaagtcgcatatgccctgattgcaatgtgcctcttccctgtcgcgatcggaggttactgggcctatggaaacatggtgccacagggagggatgctgacggcgctctacgccttccacagccacgacatcccccggggcctccttgctgcgacgttcctccttgtcgtgttcaactgcctgagcagcttccagatatactccatgccggttttcgacagctttgaggctgcctacacgggccggaccaaccggccttgctcggtctgggtgagatcaggcttcagggtgttctacggcttcctctcgctgttcatcagcgtcgcgctgccgttcctctccagcctcgccggcctgcttggggggctgacattgccggtcaccttcgcctacccgtgcttcatgtggatctgcatcaagaagcctgagaggttcagctcaggatggtacctgaactgggggcttgggctgcttggcactgcattcagcctggctctctgtgtgggtggtgtctggagcatcatcagcagtgggatgaagttcaagttcttcaagcccccaagctag</cdnaseq>|
| + | Lu, Y., Song, Z., Lü, K., Lian, X., & Cai, H. (2012). Molecular characterization, expression and functional analysis of the amino acid transporter gene family (OsAATs) in rice. Acta physiologiae plantarum, 34(5), 1943-1962. |
| − | AA = <aaseq>MAMAVEGAGAGVVVSEPEVVSIPPTPRGMSTPDGTATPPPAAGR GAATPARRVVEGLRGYLEEVGHLTRLNPQDAWLPITESRSGNARYAAFHTLNAGLGFQ ALLLPLAFPALGWSWGIISLTVAYFWQLYTLWILVKLHEAVPGRRYNRYVELAQAAFG EKLGMWLSLFPTIYLSAGSATALILVGGETMKLFYQIVCGPICSPSPISTIEWYLVFT SLAIVLSQLPNLNSIAGVSLIGGTTAITYCTMSWVLSVSQPQPPTVSYEPQAYTSLGS SLFSTLNALGIIAFAFRGHNLALEIQATMPSTFKHPAHVPMWRGAKVAYALIAMCLFP VAIGGYWAYGNMVPQGGMLTALYAFHSHDIPRGLLAATFLLVVFNCLSSFQIYSMPVF DSFEAAYTGRTNRPCSVWVRSGFRVFYGFLSLFISVALPFLSSLAGLLGGLTLPVTFA YPCFMWICIKKPERFSSGWYLNWGLGLLGTAFSLALCVGGVWSIISSGMKFKFFKPPS </aaseq>|
| + | </ref> |
| − | DNA = <dnaseqindica>3502..3989#3266..3398#2736..3163#2046..2179#351..694#actctctctcacacaccacgtcccatcccgtcgcgtcgccgcacattcacccccacacccttgccgcgccgccccgcctgccgtgccgtccggcgaacctacctagcctagcgctagcctagctgaagccagcaagcaagtgcaaacagtgcccaggaccaccaccaccgccattgccgccacctctccctacagctgttcgactacgccattgtcgtcactcactccaccgtactacactcgccttcttctctctcctctccgacacgacagcgacttctccctcccgccaccttttccctccaagaaccaccccccaagaaagcccagaccagagagacagtgtgccgatggcgatggcggtggagggtgcgggtgcgggggtggtggtgagcgagccggaggtggtgtcgataccgccgacgccgagggggatgtcgacgccggatgggacggcgacgccgccgccggcggcggggaggggcgcggcgacgccggcgaggcgggtggtggaggggctgcggggttacctggaggaggtgggacacctgacgcggctgaacccgcaggacgcgtggctgcccatcaccgagtcccgcagcggcaacgcccgctacgccgccttccacaccctcaacgccggcctcggcttccaggccctcctcctccccctcgccttccccgccctcggatggtcaggcactttccctctgcttgcttcttcagtttcttcctcctctctgctcctcgcccttgccatttccctttctttctttctttctttcagtttcagatgtgaattaatgcaggttttctgactgtctagtttttttttctttttcacttctgcttttactgatttggtctgaggttatggtttttgttgatttggtgatctgaggatgtaatgtgcatcctgtgttacttcagatgttatgcagtttctctggaagtgttttctttagttctacttttacttctttgatctgagattatggttcttcttgatttggtgacttgagactgaagtgtgcattctgtgttcttcagatgcgatgcggtttctctgaaaaatgtaattcttttacttttgggtttactgctcgaatgtaattcttttacttctgggttcatcttgctctcgaaatctgaagctgtaattttgcattctgtgttcttggtaggaggtaattggattgggcgtgggatatattttgattttactgcatcagtttgagcttgtgattctttgttgcttcagtgatttgagactgtaatatgcattttgttttcttgattggaagatgtaactggattgggtttggaaatcactgaagatttcacatattctccatcactgcagtgcatattctccgtgtccattcaaaaaaaaaatctactgaaagcctcatccaagaacaagacattgttgctttaatcatgctctgggtgtggagctaccccttttgctacactttggactttgttgtccaggattcttcttccttttttaaaaaaaaatcagattctttagatggatattcagtcccaaaagttttaaagcggtggtgaaattgtattgtttatttgtttttcagattgttccagcttgggatttcttacatggttaggaacgaaatgttttgatgataaatatatttaacaaaaaaaaattacaacactttttagcaaatgtagagaaaataactgaaactgaggggtgaaaatacagatctgaaacatcttttttttttttcagtttcaaggatttattcctgaatcttcagtttatatatgagttgattgagttcttttgttagcacgtgcaacggcctcctgtgaaaaagcatgctcagcactgaaagaaaaaactgtactatgattcaatacaatcatttcaaactgaattttttcggtgccaatttgtgccttgcaactggacacagtatcaactagtagtattgatactctgaagtgcattgttttcagctgaactgttgtacagtttgaaaacacatcctaacaaatggttctttgcactgtaggagctggggaataatatcacttactgttgcttatttctggcaactgtacacactctggattcttgtcaagctccatgaagctgtaccaggaaggaggtacaacagatatgtggagcttgcacaagctgcatttggtgagacatgttctctagtctttaactattttgcatgtccattacaattagctttctattccaagctggatatctctgacatgatttctgctaatagtagcactgagttatgagtaatgcaatgtatataatcatggccttaacaagatctgtgtcagaaagatagagagaatctcctaacagtataatgtgctcttccaataggagatttttgtgttttttggtgggacagtggctagtcaaatgtactaacaccctcatgattgggtcacatctggatagcttgaactgtctccattgatggataatagatcaccctcatgttacagtaatgcaaaatgtggaatcttttttgctaccaccattaattactatgtcatcattttaatcaaactgttgcatttgacagctcaagtaattattgcctctggttacaccaaactcagaacatgcaatgttgctaagattctctctgccgatctgatccatttgactggtgaaatgcaaaatcagcaagaatgtctgattgctcttgttttttttttcattcgttcaggagaaaaactgggaatgtggctatctcttttcccaactatttatctgtcggcaggcagtgcaactgcgttgatccttgttggaggggagaccatgaagctcttttaccaaatagtttgcggcccaatctgttcaccgagtccgatttcgacgatcgaatggtacttggtgttcacatccttggccatagtcctttcccagcttccgaatctcaactcgatagccggcgtttcactcatcggtggcaccaccgcaataacatactgtaccatgtcctgggttctctcggtcagccaaccgcagcctccaacagtctcttatgaaccacaagcatacacttctcttggttcatctttgttctccaccttgaatgctcttggaataatagcatttgcattcagggggcacaatcttgcacttgaaatacaggtttgtcctcaagaaaccaattcacaagagactttttgtactctacagttaccatttggtggttcagtgtttgaatgagctggaatctgtaatttttttcaggcgacaatgccgtcgactttcaaacatccagcacatgtcccgatgtggcgcggggccaaagtcgcatatgccctgattgcaatgtgcctcttccctgtcgcgatcggaggttactgggcctatggaaacatggcaagtactacttgatcattagacccaattgttgctgcacttaacactcttaagtcctaacagtccttggaacattctccctgttgttttccaatgcctgcaggtgccacagggagggatgctgacggcgctctacgccttccacagccacgacatcccccggggcctccttgctgcgacgttcctccttgtcgtgttcaactgcctgagcagcttccagatatactccatgccggttttcgacagctttgaggctgcctacacgggccggaccaaccggccttgctcggtctgggtgagatcaggcttcagggtgttctacggcttcctctcgctgttcatcagcgtcgcgctgccgttcctctccagcctcgccggcctgcttggggggctgacattgccggtcaccttcgcctacccgtgcttcatgtggatctgcatcaagaagcctgagaggttcagctcaggatggtacctgaactgggggcttgggctgcttggcactgcattcagcctggctctctgtgtgggtggtgtctggagcatcatcagcagtgggatgaagttcaagttcttcaagcccccaagctagattgaccagcaatttccagtatcaaacttgcaaaatcagtacaaattctggtgtgtttgtgatattttcagacaatggaaaagcatatcccagctggcctccgcattgtgggtgtgcttgtcatatggttatatgaatgatatatgatgatgat</dnaseqindica>|
| + | * <ref name="ref2"> |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001073315.1 RefSeq:Os12g0485600]|
| + | Zhao H, Ma H, Yu L, Wang X, Zhao J. Genome-wide survey and expression analysis |
| − | }}
| + | of amino acid transporter gene family in rice (Oryza sativa L.). PLoS One. |
| − | [[Category:Genes]] | + | 2012;7(11):e49210. doi: 10.1371/journal.pone.0049210. PubMed PMID: 23166615; |
| − | [[Category:Japonica mRNA]]
| + | PubMed Central PMCID: PMC3499563. |
| − | [[Category:Oryza Sativa Japonica Group]] | + | </ref> |
| − | [[Category:Japonica Genes]]
| + | |
| − | [[Category:Japonica Chromosome 12]] | + | </references> |
| − | [[Category:Chromosome 12]]
| + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 12]] |
