Difference between revisions of "Os03g0810100"

From RiceWiki
Jump to: navigation, search
(Created page with "{{JaponicaGene| GeneName = Os03g0810100| Description = Similar to TRNA isopentenyl transferase-like protein (Adenylate isopentenyltransferase) (EC 2.5.1.27)| Version = NM_0...")
 
 
(2 intermediate revisions by 2 users not shown)
Line 1: Line 1:
−
{{JaponicaGene|
+
The rice '''''Os03g0810100''''' was reported as '''''OsIPT4''''' in 2006 <ref name="ref1" /> by researchers from Japan.  
−
GeneName = Os03g0810100|
 
−
Description = Similar to TRNA isopentenyl transferase-like protein (Adenylate isopentenyltransferase) (EC 2.5.1.27)|
 
−
Version = NM_001058197.1 GI:115456122 GeneID:4334529|
 
−
Length = 1671 bp|
 
−
Definition = Oryza sativa Japonica Group Os03g0810100, complete gene.|
 
−
Source = Oryza sativa Japonica Group
 
  
−
  ORGANISM  Oryza sativa Japonica Group
+
==Annotated Information==
−
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
+
===Gene Symbol===
−
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
+
*'''''Os03g0810100''''' '''''<=>''''' '''''OsIPT4''''','''''IPT4'''''
−
            clade; Ehrhartoideae; Oryzeae; Oryza.
+
 
−
|
+
===Function===
−
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
+
* Some phytohormones such as gibberellins (GAs) and cytokinins (CKs) are potential targets of the KNOTTED1-like homeobox (KNOX) protein.
−
AP = Chromosome 3:34756559..34758229|
+
* The rice (Oryza sativa) genes for adenosine phosphate isopentenyltransferase (IPT), can catalyze the rate-limiting step of CK biosynthesis.
−
CDS = 34756681..34757754|
+
* KNOX protein simultaneously decreases GA biosynthesis and increases de novo CK biosynthesis through the induction of OsIPT2 and OsIPT3 expression, and the resulting high-CK and low-GA condition is required for formation and maintenance of the meristem.
−
GCID = <gbrowseImage1>
+
 
−
name=NC_008396:34756559..34758229
+
===Phenotypic analysis===
−
source=RiceChromosome03
+
* Phenotypes of '''''OsIPT''''' overexpressers resembled those of KNOX-overproducing transgenic rice, although '''''OsIPT''''' overexpressers did not form roots or ectopic meristems, both of which are observed in KNOX overproducers.
−
preset=GeneLocation
+
 
−
</gbrowseImage1>|
+
You can also add sub-section(s) at will.
−
GSID = <gbrowseImage2>
+
 
−
name=NC_008396:34756559..34758229
+
==Labs working on this gene==
−
source=RiceChromosome03
+
* Field Production Science Center, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Nishi-Tokyo, Tokyo 188–0002, Japan (T.S.);
−
preset=GeneLocation
+
* Institute of Physical and Chemical Research Plant Science Center, Yokohama, Kanagawa 230–0045, Japan (H.S., M.K.); 
−
</gbrowseImage2>|
+
* Graduate School of Bioagricultural Sciences (H.N., Y.I., Y.S.)
−
CDNA = <cdnaseq>atgcaggcgtacatggcggtcgccgccgctccggcgccaccggcctcgctgacgctgctgccgcgcaccaccaccgtcatcagggacagggagcgcttcgacgcggccgtcccggtggcgccgctcgtgctgaggcatggcgccggcgtcaagcacaaggccgtcgtggtgatgggcgccacgggcaccgggaagtcacgcctcgccgtcgacctcgccctgcggttcggcggcgaggtcatcaactccgataagatgcagatacattccgggttggatgtggtgacgaacaaggtgaccgaggaggagtgcgccggcgtgccgcaccacctgatcagcgtggcgcgccccgacgacgagttcacggccgccgacttccgccgcgaggcggcgcgcgccgcggcgggggcggttgagagggggaggttgcccatcatcgccggggggtccaactcctacgtcgaggagctcgtcgaaggcgacggccgcgcgttccgggagcggtacgagtgctgcttcctctgggtcgacgtagatctcgaggtgctccgcggtttcgtcgcccgccgcgtcgacgagatgtgccggcgaggcctcgtccgggaggtggccgcagcgttcgacccgcgccgcaccgactactccaggggcatctggcgcgccatcggcgtgccggagctcgacgcgtacctccgctcccgcggcgacggcgccgacgaggaggagcgggcgcgcatgctcgccgcggccgtcgcggagatcaagttgaacacgttccggctcgcgtgccgccagcaccgcaagatcgagaggctggaccgcatgtggcgcgcccgccgcgtcgacgccacggaggtgttcaggaggcgcggccacgccgccgacgacgcgtggcagcggctcgtcgccgcgccgtgcatcgacgccgtccggtcattcctcttcgaggaccaagaacgcagcagcatcgccgccggcaaacctcccctcttcgccgccggcaaggccacttcaggcaacatctccgtcttcgcctccgcggccgccgccatggcggcggccgctgcaatctga</cdnaseq>|
+
* Bioscience and Biotechnology Center (Y.Y., M.M.), Nagoya University, Nagoya, Aichi 464–8601, Japan
−
AA = <aaseq>MQAYMAVAAAPAPPASLTLLPRTTTVIRDRERFDAAVPVAPLVL                    RHGAGVKHKAVVVMGATGTGKSRLAVDLALRFGGEVINSDKMQIHSGLDVVTNKVTEE                    ECAGVPHHLISVARPDDEFTAADFRREAARAAAGAVERGRLPIIAGGSNSYVEELVEG                    DGRAFRERYECCFLWVDVDLEVLRGFVARRVDEMCRRGLVREVAAAFDPRRTDYSRGI                    WRAIGVPELDAYLRSRGDGADEEERARMLAAAVAEIKLNTFRLACRQHRKIERLDRMW                    RARRVDATEVFRRRGHAADDAWQRLVAAPCIDAVRSFLFEDQERSSIAAGKPPLFAAG                    KATSGNISVFASAAAAMAAAAAI</aaseq>|
+
 
−
DNA = <dnaseqindica>123..1196#agcatccatcgcaaaatccacctcagctagctacccaagcgcacgcgccaccgcccgcgcgcgagctgagctagcgatcaacaccggtcgaacacctagcgagcatcaccaccatcatcaccatgcaggcgtacatggcggtcgccgccgctccggcgccaccggcctcgctgacgctgctgccgcgcaccaccaccgtcatcagggacagggagcgcttcgacgcggccgtcccggtggcgccgctcgtgctgaggcatggcgccggcgtcaagcacaaggccgtcgtggtgatgggcgccacgggcaccgggaagtcacgcctcgccgtcgacctcgccctgcggttcggcggcgaggtcatcaactccgataagatgcagatacattccgggttggatgtggtgacgaacaaggtgaccgaggaggagtgcgccggcgtgccgcaccacctgatcagcgtggcgcgccccgacgacgagttcacggccgccgacttccgccgcgaggcggcgcgcgccgcggcgggggcggttgagagggggaggttgcccatcatcgccggggggtccaactcctacgtcgaggagctcgtcgaaggcgacggccgcgcgttccgggagcggtacgagtgctgcttcctctgggtcgacgtagatctcgaggtgctccgcggtttcgtcgcccgccgcgtcgacgagatgtgccggcgaggcctcgtccgggaggtggccgcagcgttcgacccgcgccgcaccgactactccaggggcatctggcgcgccatcggcgtgccggagctcgacgcgtacctccgctcccgcggcgacggcgccgacgaggaggagcgggcgcgcatgctcgccgcggccgtcgcggagatcaagttgaacacgttccggctcgcgtgccgccagcaccgcaagatcgagaggctggaccgcatgtggcgcgcccgccgcgtcgacgccacggaggtgttcaggaggcgcggccacgccgccgacgacgcgtggcagcggctcgtcgccgcgccgtgcatcgacgccgtccggtcattcctcttcgaggaccaagaacgcagcagcatcgccgccggcaaacctcccctcttcgccgccggcaaggccacttcaggcaacatctccgtcttcgcctccgcggccgccgccatggcggcggccgctgcaatctgagaagcgcaggcaccaacctacttacatacacatacatgaccaaacacaaaaacgcagagcaccatgccactctcaagacattcaggctgctgccaatcgccattgccgatcaaattcagagctcgtcagtcggatcaaacgatgaaggctgctgcttctgcggtcaacatctcgatgacctgccaattgcaatgcaaagcaagattgttcatatactggtaactggttgactcctttttgtttttgctgtgtttctttgtgatatgaggagattgatgaattgcgcgcgagagtgtaacttatgagttttgagttttttttttctttttggtttctcctctgattttgggtgtgtaacagtaggagtaaaaactaaaaagtattgacttggatgttaattgggggattgatgtaatagcctctccttgtaacatagaaatcatgagctgaaataattaaatcgttgagaccttgc</dnaseqindica>|
+
==References==
−
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001058197.1 RefSeq:Os03g0810100]|
+
<references>
−
}}
+
* <ref name="ref1">
−
[[Category:Genes]]
+
Sakamoto T, Sakakibara H, Kojima M, Yamamoto Y, Nagasaki H, Inukai Y, Sato Y,
−
[[Category:Japonica mRNA]]
+
Matsuoka M. Ectopic expression of KNOTTED1-like homeobox protein induces
−
[[Category:Oryza Sativa Japonica Group]]
+
expression of cytokinin biosynthesis genes in rice. Plant Physiol. 2006
−
[[Category:Japonica Genes]]
+
Sep;142(1):54-62. PubMed PMID: 16861569; PubMed Central PMCID: PMC1557621.
−
[[Category:Japonica Chromosome 3]]
+
 
−
[[Category:Chromosome 3]]
+
</ref>
 +
</references>
 +
 
 +
 
 +
==Structured Information==
 +
    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]]

Latest revision as of 10:50, 2 March 2017

The rice Os03g0810100 was reported as OsIPT4 in 2006 [1] by researchers from Japan.

Annotated Information

Gene Symbol

  • Os03g0810100 <=> OsIPT4,IPT4

Function

  • Some phytohormones such as gibberellins (GAs) and cytokinins (CKs) are potential targets of the KNOTTED1-like homeobox (KNOX) protein.
  • The rice (Oryza sativa) genes for adenosine phosphate isopentenyltransferase (IPT), can catalyze the rate-limiting step of CK biosynthesis.
  • KNOX protein simultaneously decreases GA biosynthesis and increases de novo CK biosynthesis through the induction of OsIPT2 and OsIPT3 expression, and the resulting high-CK and low-GA condition is required for formation and maintenance of the meristem.

Phenotypic analysis

  • Phenotypes of OsIPT overexpressers resembled those of KNOX-overproducing transgenic rice, although OsIPT overexpressers did not form roots or ectopic meristems, both of which are observed in KNOX overproducers.

You can also add sub-section(s) at will.

Labs working on this gene

  • Field Production Science Center, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Nishi-Tokyo, Tokyo 188–0002, Japan (T.S.);
  • Institute of Physical and Chemical Research Plant Science Center, Yokohama, Kanagawa 230–0045, Japan (H.S., M.K.);
  • Graduate School of Bioagricultural Sciences (H.N., Y.I., Y.S.)
  • Bioscience and Biotechnology Center (Y.Y., M.M.), Nagoya University, Nagoya, Aichi 464–8601, Japan

References

  1. ↑ Sakamoto T, Sakakibara H, Kojima M, Yamamoto Y, Nagasaki H, Inukai Y, Sato Y, Matsuoka M. Ectopic expression of KNOTTED1-like homeobox protein induces expression of cytokinin biosynthesis genes in rice. Plant Physiol. 2006 Sep;142(1):54-62. PubMed PMID: 16861569; PubMed Central PMCID: PMC1557621.


Structured Information