Difference between revisions of "Os06g0729800"

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Please input one-sentence summary here.
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The rice '''''Os06g0729800''''' was reported as '''''OsIPT10''''' in 2006 <ref name="ref1" /> by researchers from Japan.  
  
 
==Annotated Information==
 
==Annotated Information==
 +
===Gene Symbol===
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*'''''Os06g0729800''''' '''''<=>''''' '''''OsIPT10''''','''''IPT10'''''
 
===Function===
 
===Function===
Please input function information here.
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* Some phytohormones such as gibberellins (GAs) and cytokinins (CKs) are potential targets of the KNOTTED1-like homeobox (KNOX) protein.
 +
* The rice (Oryza sativa) genes for adenosine phosphate isopentenyltransferase (IPT), can catalyze the rate-limiting step of CK biosynthesis.
 +
* KNOX protein simultaneously decreases GA biosynthesis and increases de novo CK biosynthesis through the induction of OsIPT2 and OsIPT3 expression, and the resulting high-CK and low-GA condition is required for formation and maintenance of the meristem.
  
===Expression===
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===Phenotypic analysis===
Please input expression information here.
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* Phenotypes of '''''OsIPT''''' overexpressers resembled those of KNOX-overproducing transgenic rice, although '''''OsIPT''''' overexpressers did not form roots or ectopic meristems, both of which are observed in KNOX overproducers.
 
 
===Evolution===
 
Please input evolution information here.
 
  
 
You can also add sub-section(s) at will.
 
You can also add sub-section(s) at will.
  
 
==Labs working on this gene==
 
==Labs working on this gene==
Please input related labs here.
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* Field Production Science Center, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Nishi-Tokyo, Tokyo 188–0002, Japan (T.S.);
 +
* Institute of Physical and Chemical Research Plant Science Center, Yokohama, Kanagawa 230–0045, Japan (H.S., M.K.); 
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* Graduate School of Bioagricultural Sciences (H.N., Y.I., Y.S.)
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* Bioscience and Biotechnology Center (Y.Y., M.M.), Nagoya University, Nagoya, Aichi 464–8601, Japan
  
 
==References==
 
==References==
Please input cited references here.
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<references>
 +
* <ref name="ref1">
 +
Sakamoto T, Sakakibara H, Kojima M, Yamamoto Y, Nagasaki H, Inukai Y, Sato Y,
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Matsuoka M. Ectopic expression of KNOTTED1-like homeobox protein induces
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expression of cytokinin biosynthesis genes in rice. Plant Physiol. 2006
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Sep;142(1):54-62. PubMed PMID: 16861569; PubMed Central PMCID: PMC1557621.
 +
 
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</ref>
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</references>
  
 
==Structured Information==
 
==Structured Information==
{{JaponicaGene|
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 6]]
GeneName = Os06g0729800|
 
Description = contains InterPro domain(s): IPR002627, IPR011593|
 
Version = NM_001065186.2 GI:297606556 GeneID:4342142|
 
Length = 1539 bp|
 
Definition = Oryza sativa Japonica Group Os06g0729800, complete gene.|
 
Source = Oryza sativa Japonica Group
 
 
 
  ORGANISM  Oryza sativa Japonica Group
 
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
 
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
 
            clade; Ehrhartoideae; Oryzeae; Oryza.
 
|
 
Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
 
AP = Chromosome 6:31977871..31979409|
 
CDS = 31977977..31979230|
 
GCID = <gbrowseImage1>
 
name=NC_008399:31977871..31979409
 
source=RiceChromosome06
 
preset=GeneLocation
 
</gbrowseImage1>|
 
GSID = <gbrowseImage2>
 
name=NC_008399:31977871..31979409
 
source=RiceChromosome06
 
preset=GeneLocation
 
</gbrowseImage2>|
 
CDNA = <cdnaseq>atgcagtatggatgcaggcgccccgccgtgtggaagagaagttggtccccggctgccgccgccgccaccaagaacaaggtcatcgtcatctcaggccccaccggcgccggcaagaccaggctcgccttggacctcgccaagaggctctccggggagatcatcagcgccgactccgtccaggtctaccggggcctcgacgtcggctccgccaagccctcctcttccgacagggccgccgtgccgcaccacctcatcgacatcctccacgcctccgacgactactccgccggggacttcttccacgacgcccgcgcagcaaccgaccacctcctcgcccgagcccgcgtccccattgtcgccggagggactggcctctacctccgctggtacatctatggcaagcccagtgtcccgcagtcttccatggacgtcacctccgccgtctggtccgagctctcccgcttccgggacaccggccgctgggaagaagccgtcgacctggttgccaacgccggcgaccccaaagctcgggacctgtcagtcaacaactggtcaaggttaaggagaagccttgagatcatcaggtcttcaggctcacctccctctgccttctccttgccctacaatgcttacaatctcaatcaccaccgtcgtctcagtctcaccaaccaagccgatcaacccacggagctggagctggactacgacttcctctgcatcttcctcgcgtgcccacgcgttgagctctacagatcaatcgatctgaggtgcgaagagatgctggccgacacaggtggcctactctctgaagcctcctggctcctcgacatcggcttgagtcctggcatgaactcggctacctgcgcaatcggctacaggcaagccatggagtacttgcttcagtgtaggcacaacggaggcagcagctccccacaagagttcttggagttcctgaccaagtttcagactgcctccaggaacttctcaaagaggcagatgacatggttccgcaacgagaagatttaccagtgggttgatgcctcgcagcctttcgacgccattgcgcagtttatctgtgatgcttaccatgaccgtgctgcaaggctggttcctgattcactggaaatgaagagggagagttgcaggcacgagagccgtgatctcaagacctaccgttctgagaacagggtgttccgtggggatgatgattgttgccacgttttggattggatcacaaggacacagaggaagtga</cdnaseq>|
 
AA = <aaseq>MQYGCRRPAVWKRSWSPAAAAATKNKVIVISGPTGAGKTRLALD                    LAKRLSGEIISADSVQVYRGLDVGSAKPSSSDRAAVPHHLIDILHASDDYSAGDFFHD                    ARAATDHLLARARVPIVAGGTGLYLRWYIYGKPSVPQSSMDVTSAVWSELSRFRDTGR                    WEEAVDLVANAGDPKARDLSVNNWSRLRRSLEIIRSSGSPPSAFSLPYNAYNLNHHRR                    LSLTNQADQPTELELDYDFLCIFLACPRVELYRSIDLRCEEMLADTGGLLSEASWLLD                    IGLSPGMNSATCAIGYRQAMEYLLQCRHNGGSSSPQEFLEFLTKFQTASRNFSKRQMT                    WFRNEKIYQWVDASQPFDAIAQFICDAYHDRAARLVPDSLEMKRESCRHESRDLKTYR                    SENRVFRGDDDCCHVLDWITRTQRK</aaseq>|
 
DNA = <dnaseqindica>107..1360#tcttcccttcccttccacacgaagccgccgcccgccggccggccgcccagaaccagaaagctcctcctcctcctcctccgcgcgccatcagatctcccagtgcggtatgcagtatggatgcaggcgccccgccgtgtggaagagaagttggtccccggctgccgccgccgccaccaagaacaaggtcatcgtcatctcaggccccaccggcgccggcaagaccaggctcgccttggacctcgccaagaggctctccggggagatcatcagcgccgactccgtccaggtctaccggggcctcgacgtcggctccgccaagccctcctcttccgacagggccgccgtgccgcaccacctcatcgacatcctccacgcctccgacgactactccgccggggacttcttccacgacgcccgcgcagcaaccgaccacctcctcgcccgagcccgcgtccccattgtcgccggagggactggcctctacctccgctggtacatctatggcaagcccagtgtcccgcagtcttccatggacgtcacctccgccgtctggtccgagctctcccgcttccgggacaccggccgctgggaagaagccgtcgacctggttgccaacgccggcgaccccaaagctcgggacctgtcagtcaacaactggtcaaggttaaggagaagccttgagatcatcaggtcttcaggctcacctccctctgccttctccttgccctacaatgcttacaatctcaatcaccaccgtcgtctcagtctcaccaaccaagccgatcaacccacggagctggagctggactacgacttcctctgcatcttcctcgcgtgcccacgcgttgagctctacagatcaatcgatctgaggtgcgaagagatgctggccgacacaggtggcctactctctgaagcctcctggctcctcgacatcggcttgagtcctggcatgaactcggctacctgcgcaatcggctacaggcaagccatggagtacttgcttcagtgtaggcacaacggaggcagcagctccccacaagagttcttggagttcctgaccaagtttcagactgcctccaggaacttctcaaagaggcagatgacatggttccgcaacgagaagatttaccagtgggttgatgcctcgcagcctttcgacgccattgcgcagtttatctgtgatgcttaccatgaccgtgctgcaaggctggttcctgattcactggaaatgaagagggagagttgcaggcacgagagccgtgatctcaagacctaccgttctgagaacagggtgttccgtggggatgatgattgttgccacgttttggattggatcacaaggacacagaggaagtgacctctactgctctctcttgttatctcttttttttcttccccctcttttcccgccaggaaactatcctgctgctgtgtttggagatgttacaataggaaatttcagcctttttttgtcagaaaaatacagatacttgttttgcaaatgttataccaaaagtgttttcaactttggaattc</dnaseqindica>|
 
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001065186.2 RefSeq:Os06g0729800]|
 
}}
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Oryza Sativa Japonica Group]]
 
[[Category:Japonica Genes]]
 
[[Category:Japonica Chromosome 6]]
 
[[Category:Chromosome 6]]
 

Latest revision as of 10:57, 2 March 2017

The rice Os06g0729800 was reported as OsIPT10 in 2006 [1] by researchers from Japan.

Annotated Information

Gene Symbol

  • Os06g0729800 <=> OsIPT10,IPT10

Function

  • Some phytohormones such as gibberellins (GAs) and cytokinins (CKs) are potential targets of the KNOTTED1-like homeobox (KNOX) protein.
  • The rice (Oryza sativa) genes for adenosine phosphate isopentenyltransferase (IPT), can catalyze the rate-limiting step of CK biosynthesis.
  • KNOX protein simultaneously decreases GA biosynthesis and increases de novo CK biosynthesis through the induction of OsIPT2 and OsIPT3 expression, and the resulting high-CK and low-GA condition is required for formation and maintenance of the meristem.

Phenotypic analysis

  • Phenotypes of OsIPT overexpressers resembled those of KNOX-overproducing transgenic rice, although OsIPT overexpressers did not form roots or ectopic meristems, both of which are observed in KNOX overproducers.

You can also add sub-section(s) at will.

Labs working on this gene

  • Field Production Science Center, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Nishi-Tokyo, Tokyo 188–0002, Japan (T.S.);
  • Institute of Physical and Chemical Research Plant Science Center, Yokohama, Kanagawa 230–0045, Japan (H.S., M.K.);
  • Graduate School of Bioagricultural Sciences (H.N., Y.I., Y.S.)
  • Bioscience and Biotechnology Center (Y.Y., M.M.), Nagoya University, Nagoya, Aichi 464–8601, Japan

References

  1. Sakamoto T, Sakakibara H, Kojima M, Yamamoto Y, Nagasaki H, Inukai Y, Sato Y, Matsuoka M. Ectopic expression of KNOTTED1-like homeobox protein induces expression of cytokinin biosynthesis genes in rice. Plant Physiol. 2006 Sep;142(1):54-62. PubMed PMID: 16861569; PubMed Central PMCID: PMC1557621.

Structured Information