|
|
| (2 intermediate revisions by 2 users not shown) |
| Line 1: |
Line 1: |
| − | {{JaponicaGene|
| + | The rice '''''Os06g0193400''''' was reported as '''''OsPTF1''''' in 2005 <ref name="ref1" /> by researchers from China. |
| − | GeneName = Os06g0193400|
| |
| − | Description = Similar to Helix-loop-helix protein homolog|
| |
| − | Version = NM_001063578.1 GI:115466887 GeneID:4340382|
| |
| − | Length = 5787 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os06g0193400, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os06g0193400''''' '''''<=>''''' '''''OsPTF1''''','''''PTF1''''' |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | |
| − | |
| + | ===Phenotypic analysis=== |
| − | Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
| + | * Overexpression of '''''OsPTF1''''' enhanced tolerance to Pi starvation in transgenic rice. |
| − | AP = Chromosome 6:4708767..4714553|
| + | * Tillering ability, root and shoot biomass, and phosphorus content of transgenic rice plants were about 30% higher than those of the wild-type plants in Pi-deficient conditions in hydroponic experiments. |
| − | CDS = 4709097..4709336,4710082..4710150,4710243..4710308,4710998..4711063,4711185..4711346<br>,4711439..4711531,4711633..4711725,4711810..4712457|
| + | * In soil pot and field experiments, more than 20% increase in tiller number, panicle weight, and phosphorus content was observed in transgenic plants compared to wild-type plants at low-Pi levels. |
| − | GCID = <gbrowseImage1>
| + | * In Pi-deficient conditions, transgenic rice plants showed significantly higher total root length and root surface area, which results in a higher instantaneous Pi uptake rate over their wild-type counterparts. |
| − | name=NC_008399:4708767..4714553
| + | |
| − | source=RiceChromosome06
| + | ===Function=== |
| − | preset=GeneLocation
| + | * '''''OsPTF1''''' is a Novel Transcription Factor Involved in Tolerance to Phosphate Starvation in Rice |
| − | </gbrowseImage1>| | + | |
| − | GSID = <gbrowseImage2>
| + | ===Expression=== |
| − | name=NC_008399:4708767..4714553
| + | * The expression of '''''OsPTF1''''' is Pi starvation induced in roots while constitutively expressed in shoots, as shown by northern-blot analysis. |
| − | source=RiceChromosome06
| + | |
| − | preset=GeneLocation
| + | You can also add sub-section(s) at will. |
| − | </gbrowseImage2>| | + | |
| − | CDNA = <cdnaseq>atggactactctgctggttcctacatgtggcctggcaattcaggttctgagaactataattttgttgacggttcgtcggaatcatatgcagaagaaggaagcctaccaccttcaggctatttcatgggagctggatcagatcgcagtttaaagatcacggagaatgaaaggaaccccactatgcttgcaaatggatgcttgccatacaacacccaggctcatccattatctggccagattctacctaagggtgagctccctaacaatcttctggatcttcaacagctacagaacagcagcaatctgcgaagcaattcaattcccccaggggttcttcagtgcaattcaacatctggaacatttgatgcgaaattggatacacctggtcttgcagaactgcctcatgctttgtccagttcaattgatagcaatggtagtgacatttctgcttttcttgctgatgtgcatgccgtttcttcagccccgacgttgtgttcagcattccaaaacgtttcctccttcatggaaccagtaaatctagatgctttcggtttccaaggggcacaaaatgttgctatgttgaacaaaacaagtcttccaaatgggaatccctcgctgtttgataatgctgccatagcatcactacatgatagcaaagagtttctcaatggtggttccatcccttcgtttggtactgtcctgcaggcactaggagcgggtggtttgaaggctgctcaacaggagcaaaatatccggaatatacctctccctacattcacatctggtagtcatttggcagttactgatgcacaagggccaccacttccttcaaagataccaccattgatccatgaccataatagtgagtaccctattaaccattcttctgatgtggaaccccaagcaaattcagctcctggaaatagtgccaatgcgaagccacgtacaagggctcgccgtggacaggcaactgatcctcacagtattgctgaacggcttcgccgagagaaaatttcagaaaggatgaaaaatctccaagtccttgtcccaaactccaataaggcagataaggcatcaatgcttgatgaaataattgattatgtgaaatttcttcagcttcaggtcaaggtattgagcatgagcaggctaggagctcctggagcagttcttccccttcttagggaatctcaaaccgagtgccatagtaatccatctctatcagcttcaaccatttcacaagggccaccagacatgccagactcagaagacagctctgcctttgagcaagaggtagtgaagctgatggaaacgagcatcatcagcgcgatgcagtatcttcagaacaagggtctctgcctgatgcccattgctctcgcttcggccatatccaaccagaaaggcatggctgctgctgctgcaatccctcctgaaaaatga</cdnaseq>|
| + | ==Labs working on this gene== |
| − | AA = <aaseq>MDYSAGSYMWPGNSGSENYNFVDGSSESYAEEGSLPPSGYFMGA GSDRSLKITENERNPTMLANGCLPYNTQAHPLSGQILPKGELPNNLLDLQQLQNSSNL RSNSIPPGVLQCNSTSGTFDAKLDTPGLAELPHALSSSIDSNGSDISAFLADVHAVSS APTLCSAFQNVSSFMEPVNLDAFGFQGAQNVAMLNKTSLPNGNPSLFDNAAIASLHDS KEFLNGGSIPSFGTVLQALGAGGLKAAQQEQNIRNIPLPTFTSGSHLAVTDAQGPPLP SKIPPLIHDHNSEYPINHSSDVEPQANSAPGNSANAKPRTRARRGQATDPHSIAERLR REKISERMKNLQVLVPNSNKADKASMLDEIIDYVKFLQLQVKVLSMSRLGAPGAVLPL LRESQTECHSNPSLSASTISQGPPDMPDSEDSSAFEQEVVKLMETSIISAMQYLQNKG LCLMPIALASAISNQKGMAAAAAIPPEK</aaseq>|
| + | * State Key Laboratory of Plant Physiology and Biochemistry, College of Life Science, Zhejiang University, Hangzhou 310029, People’s Republic of China (K.Y., Z.W., J.Z., L.D., Y.W., P.W.) |
| − | DNA = <dnaseqindica>5218..5457#4404..4472#4246..4311#3491..3556#3208..3369#3023..3115#2829..2921#2097..2744#agaaggggtgtactagtaaacaaaacaaaaagaataggttgagactttcctgctatcgtcagcattttcagcccccctcccctgggctggctctgcatcatcattcatcatcagcagcagtcagtccatccaacgcgtcttcagtcctcacccgcagcaagaaagccacacttttcctcctcctcctcctcctcctcctccgcctcttcctcttcctcccccttcgttctccacacccactctcgggctgcggcttctccggcttccgcgcctcttcctctgtcggtgagtgctgcgaaattttgtggttcttcagttaaggccgtgtttggctgcatggtgggtgggtgtgtctatctgttcttggggaggtttggggattttgggaggttagcggcggggtttcttcttcagctatgattttttcaggtcgcgggtgtggtggttagcggcgtttcttggtggggttttggttttgtgaggggagaagggaagaagggcaatgtcaaagatgggcgatcgtgtgagtttgatggtttggttggtgtgcatgtaatgttttctggttcttgattgtttctcctttatgaaatcgcggaagataagaattttctcgattgtatagttgggtaaaaattggctctttcttgttatcgaatttctaacttgtttttgtttcatggaaatcctattggtggaaaaggataaggataaggcacttgcctggttttcaaagaaggtttttgtgatgatattacgattgtataggtcaagcatgtgtgaattcatgggaatgatattacgattgtagagctcgtatgatcaagaagctcttttttttttgcatgtaatgatttatccactggcaccatttttagtttttgcaatcagcagtctcaaactgtgaaaattgtgtgctttcagcctttccctttggttttattgctcattgatagcctgttacttcttttttttacgataatagatttaggaattttgacaaatctttgcagtgctgatagatacatagtactatacattttcttttttttagataagtatacattttcttgttactgcctagacaagaacagtccaaactgactacaagcatggtatgcagcagaatgtgaactagcatttgaacagttggaggatgcatgtcggttttattacattcatagcctagctttaaagagaggatggtattgaatattgaatgtgtgtaattataatcgacaatagttacatgataaagttaagaggtcaggtttcttctactgaaaggtggaagaatatttgcttgttacaaattgattgtatggaactatgaattggttgcttccatttcccaaagaaaatgagttgccgctgtagaacaaaacagaaaataagtcctaatgatctgcaatcaatcgaattagaatcattccatttgtacaaatggtggcttaggacagcagctgtggtttcaatgttcatgtacgttctgttttgtgtataacaaacaatggcgcagattggaagcttgtcttgtatctaagttttcataatgcactaccatccatgctatatttgctgtccttatgttcttttagttagttcatcacaaatattagatataatttcaactatgcttggtttagctgtttgtgacatctctgcagtttgttaaggaaaataaatgcggaccatggaaaaattcaaaatcccttatttaaataatttgtgtattaaactgacatgaatatgacacgagtgtgttttagctgaggatcttttgtcaactgtatgcatcaagcaagaattgtcctactaatattttaatacttgtttattgatgtggttaacgcgtgctataagataaccaactttataagtagtagctattatagtattgtatatataccatcttctcatttgacaatatcttttaaatattgtgcacagggttaacaaagttactttcagcgtcagagggtatttcgtacaaaaaggaactgctgttggtacaggattatcagctgtgaacactttctgtttctagaggccattctctgtaacactttggagcatcaattttgtagcgtgctatcatggactactctgctggttcctacatgtggcctggcaattcaggttctgagaactataattttgttgacggttcgtcggaatcatatgcagaagaaggaagcctaccaccttcaggctatttcatgggagctggatcagatcgcagtttaaagatcacggagaatgaaaggaaccccactatgcttgcaaatggatgcttgccatacaacacccaggctcatccattatctggccagattctacctaagggtgagctccctaacaatcttctggatcttcaacagctacagaacagcagcaatctgcgaagcaattcaattcccccaggggttcttcagtgcaattcaacatctggaacatttgatgcgaaattggatacacctggtcttgcagaactgcctcatgctttgtccagttcaattgatagcaatggtagtgacatttctgcttttcttgctgatgtgcatgccgtttcttcagccccgacgttgtgttcagcattccaaaacgtttcctccttcatggaaccagtaaatctagatgctttcggtttccaaggggcacaaaatgttgctatgttgaacaaaacaagtcttccaaatgggaatccctcgctgtttgataatgctgccatagcatcactacatgtaatgatcaccaattcaccacatatacataattgccatattatctgcttcattgaattattttttgctcttttggcaatccaggatagcaaagagtttctcaatggtggttccatcccttcgtttggtactgtcctgcaggcactaggagcgggtggtttgaaggctgctcaacaggtttcaatttcaagctttaccactaaacagcaattcccacatccgcagctcactatccactcaattctaactgtactgatgaatcaattttcatattgcaggagcaaaatatccggaatatacctctccctacattcacatctggtagtcatttggcagttactgatgcacaagggccaccacttccttcaaaggttctatttgcatttctcattgacagtgtttcactttctttctcttcaattttatacctcaacagttgaattttgtgtatgaaaatgttcagataccaccattgatccatgaccataatagtgagtaccctattaaccattcttctgatgtggaaccccaagcaaattcagctcctggaaatagtgccaatgcgaagccacgtacaagggctcgccgtggacaggcaactgatcctcacagtattgctgaacgggtgagttcttttataagatcagttcactttgaaacaaatcaaactgttgcataataatcgattattttttttaatttgtgtgcacccatggtcttaaatataatttctcattgtgctgcagcttcgccgagagaaaatttcagaaaggatgaaaaatctccaagtccttgtcccaaactccaataaggtgctttttttgttctgagtcaccacaaaaatgcaatccgcttctccccctgttgttattgctgtcatattcataactgttgattgataacaactaagagtatactaggggaggatacatacttaagtatgttgggaaattgaccaaatgggacaaacagaagcaagcatttttttggattatcaaatagatcagatccaagtattgatcttttggtgcagccaacacatgggcgttagatgtaccgttgtctttgtttcaggtggatgggatttataatgttgctgatacatatattctgccttcaatgcaattatttttttattggcatctatctatactccttttcaaagaaaacaatggtggtggcagtgaatctgccaccccacctctattatatagagtattgtttatgcttttactaaataccccttcatgtgttttacaaaatagttttctacatatgattctattttatttcatctctaaaatacaaatttattatgcaaagacatctacagggaataaattgtcccaaaaacatcacaataatttttccaagcaatattagcacatgtataatttattttaatccgtagcaaagcaagtgtatttagctagtatagaataaaatgtatacaaattttggtttagaactcctgacaattaacccttctttgtatgagcaggcagataaggcatcaatgcttgatgaaataattgattatgtgaaatttcttcagcttcaggtcaaggtacatctgcagtcaggtttatttggtgtgtgggatgaggtgggggcgttagctccttttctgatggctgacagtcttcttgaattctgtaggtattgagcatgagcaggctaggagctcctggagcagttcttccccttcttagggaatctcaaaccgaggtgtgcagctttcctatttctttatgtttccaaacagaatccttgttagaaagactagttgaatgtaggctgtgctatgttaaaagattgtagagctatggaaacaagtcaatttattttaacctcagttttttccccttaaattacatttagatacataacaaataacatcagtccaaatattcatgaccattccatgatttcatatgaacattggcttgcctttattaatttatttgctctgtgagattagttttgaattgcccattattgcgaccattggcatcaagataggacaaacgaagatatacctttgcacttgtgtacgaggggaacaaaaccttctgtgatcaaaactgcttatgcattgtgccattatgcttcaataatcaatactgcttaacttttttttgtgtgttctgattaaattaataagataactaaccaaaacttgtgctttcttgggttggcatcttaattggctacattataaataatatattatttatatgtagtgcaacatatgcatatccagtttcaagttttcgacatcctagatcagttctaccataatattgtagcctactggaagaatctttctgtgcattgtagtcccaatttatatccgagatttgctcctctggttttcattgagtttacttaaatatgtaataactgatggggccacaattcacctggatctcactatgtctgaaataaccatctactcattgaacttctgcagtgccatagtaatccatctctatcagcttcaaccatttcacaagggccaccagacatgccagactcagaagacagctctgcctttgagcaagaggtagtgaagctgatggaaacgagcatcatcagcgcgatgcagtatcttcagaacaagggtctctgcctgatgcccattgctctcgcttcggccatatccaaccagaaaggcatggctgctgctgctgcaatccctcctgaaaaatgaaaaaaaaaatgaaatcggaaaaatatggggggaacaactgcagaagacataataactcaacggctgcagaaatgtgctggacactgcaggttttgtgaatgaagtgaaatccaatccagggggtcataaaacataggaagttatctgactaattcaggcttatgacacaatctactctatagtctatagctattgtgtgcctgttgcacatcagttgatgtgtattcttttgttttttttgtattgcatccggatgctaattaggtagtagtgtttcctttgatgtacatgagtattatctatgcggttttatctaatgtgcatataaag</dnaseqindica>|
| + | * China National Rice Research Institute, Hangzhou 310006, People’s Republic of China (L.G.) |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001063578.1 RefSeq:Os06g0193400]|
| + | |
| − | }}
| + | ==References== |
| − | [[Category:Genes]] | + | <references> |
| − | [[Category:Japonica mRNA]]
| + | * <ref name="ref1"> |
| − | [[Category:Oryza Sativa Japonica Group]] | + | Yi K, Wu Z, Zhou J, Du L, Guo L, Wu Y, Wu P. OsPTF1, a novel transcription |
| − | [[Category:Japonica Genes]] | + | factor involved in tolerance to phosphate starvation in rice. Plant Physiol. 2005 |
| − | [[Category:Japonica Chromosome 6]]
| + | Aug;138(4):2087-96. PubMed PMID: 16006597; PubMed Central PMCID: PMC1183397. |
| − | [[Category:Chromosome 6]]
| + | </ref> |
| | + | </references> |
| | + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 6]] |
