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| − | Please input one-sentence summary here.
| + | The rice '''''Os06g0229300''''' was reported as '''''HOX1a''''' in 2011 <ref name="ref1" /> by researchers from China. |
| | | | |
| | ==Annotated Information== | | ==Annotated Information== |
| | ===Function=== | | ===Function=== |
| − | Please input function information here.
| + | * Homeobox transcription factors are involved in various aspects of plant development, including maintenance of the biosynthesis and signaling pathways of different hormones. |
| | + | * '''''HOX1a''''' suppresses the transcription of early flowering1 (EL1), a negative regulator of GA signaling, and further electrophoretic mobility shift assay and chromatin immunoprecipitation analysis revealed that HOX1a directly bound to the promoter region of EL1 to suppress its expression and stimulate GA signaling. |
| | + | * '''''HOX1a''''' functions as a positive regulator of GA signaling by suppressing EL1, providing informative hints on the study of GA signaling. |
| | + | |
| | + | ===Gene Symbol=== |
| | + | * '''''Os06g0229300''''' '''''<=>''''' '''''HAZ1,HOX1a,OsHOX1a,OsHAZ1''''' |
| | + | |
| | + | ===Phenotypic analysis=== |
| | + | * Overexpression of rice homeobox gene '''''HOX1a''''' resulted in enhanced gibberellin (GA) response, indicating a positive effect of HOX1a in GA signaling. |
| | | | |
| | ===Expression=== | | ===Expression=== |
| − | Please input expression information here.
| + | * '''''HOX1a''''' is induced by GA and encodes a homeobox transcription factor with transcription repression activity. |
| − | | |
| − | ===Evolution===
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| − | Please input evolution information here.
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| | | | |
| | You can also add sub-section(s) at will. | | You can also add sub-section(s) at will. |
| | | | |
| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | Please input related labs here.
| + | * National Key Laboratory of Plant Molecular Genetics, Institute of Plant Physiology and Ecology, Shanghai Institute for Biological Sciences, the Chinese Academy of Sciences, Shanghai 200032, China |
| | | | |
| | ==References== | | ==References== |
| − | Please input cited references here.
| + | <references> |
| | + | * <ref name="ref1"> |
| | + | Wen BQ, Xing MQ, Zhang H, Dai C, Xue HW. Rice homeobox transcription factor |
| | + | HOX1a positively regulates gibberellin responses by directly suppressing EL1. J |
| | + | Integr Plant Biol. 2011 Nov;53(11):869-78. doi: 10.1111/j.1744-7909.2011.01075.x. |
| | + | PubMed PMID: 21951842. |
| | + | </ref> |
| | + | </references> |
| | + | |
| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 6]] |
| − | GeneName = Os06g0229300|
| |
| − | Description = Similar to Hox2b protein|
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| − | Version = NM_001063749.1 GI:115467229 GeneID:4340565|
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| − | Length = 9038 bp|
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| − | Definition = Oryza sativa Japonica Group Os06g0229300, complete gene.|
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| − | Source = Oryza sativa Japonica Group
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| − | | |
| − | ORGANISM Oryza sativa Japonica Group
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| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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| − | clade; Ehrhartoideae; Oryzeae; Oryza.
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| − | |
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| − | Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
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| − | AP = Chromosome 6:6724347..6733384|
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| − | CDS = 6726928..6727493,6727606..6727771,6727850..6727973,6728058..6728170,6728269..6728877<br>,6731279..6731569,6732283..6732372,6732465..6732884|
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| − | GCID = <gbrowseImage1>
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| − | name=NC_008399:6724347..6733384
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| − | source=RiceChromosome06
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| − | preset=GeneLocation
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| − | </gbrowseImage1>|
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| − | GSID = <gbrowseImage2>
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| − | name=NC_008399:6724347..6733384
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| − | source=RiceChromosome06
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| − | preset=GeneLocation
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| − | </gbrowseImage2>|
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| − | CDNA = <cdnaseq>atggataagacaactacttctgatcttgttttggacaacgacaacattgggagtaatgctggttctgcacaggagcctcttactaccaatggtaagactagtggggtcagaaatagatacaaacaaactgttaaaaggggaaggaaaggctcccaaatatcaccaagtaaaacatatcccctgagatcttcacatagtaatgtcagggtgcttcgctctgcctcaaaaaagaagaatgagacacctattgtgcccacaaatgataatactgctgttcaacgagttgcgaagaaaaggaaaagaagcaaacccttgagacctgcacctagcagggtgcttcgctctacctcggaaaagaagaataaggcacataatgagcttctaaatgatggtgctggtgttcaaccagccgaaaagaaaagaaaggtaggcagacccccaaaaggaggaactcccaaggacgattacctcatgatccgaaagcgagttagatatgttttgaatcgaatgaactatgaacaaagtttaattcaagcctatgccagtgaaggttggaaaggtcaaagcttggaaaaaataagacctgagaaggagcttgaacgagccaaggtggaaattctgcgatgcaagtcaagaatacgggaagcttttcggaatttggattccctcctatctgagggaaagctggatgaatctatgtttgattctgctggagaaatatctagtgaagatattttctgtgctgcatgtggttcaaaggatgttacattaaaaaatgacataattctttgtgatggaatctgcgacagagggttccaccagtattgtttaaaccctcctttgcttgctgaagatattccacagggggatgaaggatggctttgccctgcatgtgattgcaaaattgactgcatagatgtattaaatgaactccaaggggtcaaactctctatccatgactcttgggagaaagtttttcctgaggcagcatcctttttgaatggttctaagcaaattgatgcgtccgatcttccatcagatgattcagcagacaatgattatgaccctactttggctcaagggcacaaggtggatgaagaaaaatcttctggagaagatggtggtgaaggattagattctgatgactcatcttctgaggattctgaatcttctgagaaggaaaagtctaaaacttcacagaatggaaggacagttgatgatcttggtttgccttctgaggattcagaggatggtgactttgatccagcaggtccagattccgacaaagaacaaaatgatgaatcaaactcagatcagtcagatgaatcagattttacatctgactctgatgatttttgtgctgagattgctaaatcctgtggtcaggatgaaatctcaggcccttcatcatcacaaatcagaacagtcgatcgcaccgatggaagtggttttgatggtgagcctaatgcagaaaattcgaatcttgcatttatggagacagagctagagcaagacatggtgctaccaatttctagtaaacgacaagttgaacgtttggattacaaaaaactgtataatgaggcttatggtaaagcatcatctgattcaagtgacgatgaagagtggtatggaaatagtacacccgaaaaaggtaatttagaagacagtgaaacagattcgcttgctgaatcacctcagggtggaaaaggattctctagaagagcaccagttaggtaccataataatgaacatactccacagaatgtaaggcccggtggttcagtaagcgaccagcaaactgaagtactttgctccaatagcaatggtagcacagccaaaaacagacattttggtcctgcaattaatcagaaactgaaggcacatttcaaggaagatccataccctagtcgtgcaacaaaagaaaatctggcacaagagttaggcctcacatttaatcaggtcactaaatggttttccagtactcgtcattacgcaagagtggcagccacaaaaaaggagaacaacattgaaaatcatacggctgagaataataacaataccaacactgttgatagcatacaactgagaggatccaatgatattgttagtgtagatagaaatgatatggtctccgaggaaaggacaggacaaagtaatctcaatgaaggtactccattaagatcagataccagctgtgggcagagtgtggctgtgactcctatggtacacccagaaaaccagggcaatgattcctcaagtaatgttagaacaccaaatgctaagtctgcggagaaattgatccctggactggaaaattcagatgaggctaggcgaaaggcggtacaacgggaactgagaaagatgaagactggcaggtga</cdnaseq>|
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| − | AA = <aaseq>MDKTTTSDLVLDNDNIGSNAGSAQEPLTTNGKTSGVRNRYKQTV KRGRKGSQISPSKTYPLRSSHSNVRVLRSASKKKNETPIVPTNDNTAVQRVAKKRKRS KPLRPAPSRVLRSTSEKKNKAHNELLNDGAGVQPAEKKRKVGRPPKGGTPKDDYLMIR KRVRYVLNRMNYEQSLIQAYASEGWKGQSLEKIRPEKELERAKVEILRCKSRIREAFR NLDSLLSEGKLDESMFDSAGEISSEDIFCAACGSKDVTLKNDIILCDGICDRGFHQYC LNPPLLAEDIPQGDEGWLCPACDCKIDCIDVLNELQGVKLSIHDSWEKVFPEAASFLN GSKQIDASDLPSDDSADNDYDPTLAQGHKVDEEKSSGEDGGEGLDSDDSSSEDSESSE KEKSKTSQNGRTVDDLGLPSEDSEDGDFDPAGPDSDKEQNDESNSDQSDESDFTSDSD DFCAEIAKSCGQDEISGPSSSQIRTVDRTDGSGFDGEPNAENSNLAFMETELEQDMVL PISSKRQVERLDYKKLYNEAYGKASSDSSDDEEWYGNSTPEKGNLEDSETDSLAESPQ GGKGFSRRAPVRYHNNEHTPQNVRPGGSVSDQQTEVLCSNSNGSTAKNRHFGPAINQK LKAHFKEDPYPSRATKENLAQELGLTFNQVTKWFSSTRHYARVAATKKENNIENHTAE NNNNTNTVDSIQLRGSNDIVSVDRNDMVSEERTGQSNLNEGTPLRSDTSCGQSVAVTP MVHPENQGNDSSSNVRTPNAKSAEKLIPGLENSDEARRKAVQRELRKMKTGR</aaseq>|
| |
| − | DNA = <dnaseqindica>2582..3147#3260..3425#3504..3627#3712..3824#3923..4531#6933..7223#7937..8026#8119..8538#gttggcacttagcaggcggcggctgctgctgcggcggcgcagggcggcggcggtgcagagcggcggcgcacggctgaggcggcggcgtagtcggcgctctccttccctgcttcttccctcctttttcctcccaaccccgactcccggcgaccgagggctgcagctgagggcggcgcgcggaggcggaggcggcgggcgcacggctgcggaggctgctgaggacgagcgcgacaacggaggctgcgcgcggcggaggctgacggcggtgaaaggttggttttcccgaatccctaatgtatagtgtgtatatatattttacagaaaccaaaccctaaatattccctcatatgttgagttctattccggttcatttatgtacggatgattgtatattttggttgattgcttggtattaagcaatggaaacttgggtaactttcagatctgaaatttaccccttaggtgtgtcaaatttcagatttaagcactagggacgttgagcattttgtttcactggccaagtccgatgtccataatttcagttcgcattttagaagtcattgagaaattccagatttaagcactgcgaccatgagctattttagtttgcatttgaggagccgttgagcaatctgtatcatctgagaactagtgcctatctctagtaatttttttcatgaatttagagaacttttaggtccggttttcatgggttttcacttatttgttggttttcatgggatatttcccctatttagaatgtatcatctattttagccatgtagagaacatgccaaattgcattgagtcttatctcagttgttcaacctatgatttatgttagtattgagaaaagatttgtgtgagtgagtggattaaaggcatggatcaaaatgtgccatcaaagggtgttaaaatgcccatggcctcagcttattggaatgactacaacacaagagttgtgtgagatttttggtgatcaagtagttgcggctgattgttcaaatacccatttatccaatccttggtacggccaagtcattgagcaatttgccgcaagaacatgttttgaggactaggtttcaaattaagaacaaatgggataaacttaggacttaatacaacagttggaagtagttgaaatcacaaataggtttgggatgggatgacacaaagcagacagtcaaggctactgcagaactatcattgagagagatccttcggtgtatggaagatgaagtggcgggttctcctcaagatgcttagctttccaatgtggaaacaaaagatagttgtggcggcaacaatggcattgcacaatttctggatctagggtttgttatgcacaacattgcattgtagctgctttaaagccttctttcctatggtgtgaatttaaagaaagtagtatgatgttgtcatgatacttgatgttatgtggtcattaagttttgtgaaaggtggtggctttaggcctattgagatccagagcggtggttgaagaggtgtggagtaacaggatctcagtaacctttgtgtgtatgagggtatcagaggcattagtttactagctgtctccaattgcgcctccatctctctgtttttttcttcttactagaaaaaatacctgtgcgttgcaacgggtgaaggttcttttaattattattatacggtttagctaaggtgaacgaccttaaaaacgaacgaccttaaaaaccgactcaaacacatatatgtatttccaaaagcgagtgaatttaaaaaccgactcaaacatggatgacgtaccaaaatgccgggaaaaacatcttcaatttttataatagtagagatataaataatgtgcaaaaagcaatgatgccgagatttgttacgttacctattaacatgttccattctaattgattattacagcaaacatataatgttggttcattgaaccaacttcttaggcaaaacaactcataggtacatgaagagtccgataggatgacactctattcattaattactgaggtgaatgtgtatatgctacatcaaattgatttgaatataacttgtatgtagatcccacacaatgaaaagatgttggttccatggccatttccccataattacacaaccttgtatgcttagtatgatggagtattatttaaactgtgttttgaaccatcaataagaaatgtccatgcaaagcttgatttataagataggctactgttttttagagcactggtacatgtagtaaacaattctactaaactcctacaaacaaaattctcaactgtttgatttaactagatgtgagttacaggagatctagatttactcacagcatgccacatcattgtttgtaagagttttgtaagataaaatttggatgtatagccttttccttttttattttgtgctgctaataatccttttttgtgttttatttgctacaggcacatgctcatttatctagactgtatcttggttataaccccttcctcaaagcatttatccaggacttccctaagcttatcaagactgatctatctgttcctacagaggaggtccatttgcagctatcatttgtatggataagacaactacttctgatcttgttttggacaacgacaacattgggagtaatgctggttctgcacaggagcctcttactaccaatggtaagactagtggggtcagaaatagatacaaacaaactgttaaaaggggaaggaaaggctcccaaatatcaccaagtaaaacatatcccctgagatcttcacatagtaatgtcagggtgcttcgctctgcctcaaaaaagaagaatgagacacctattgtgcccacaaatgataatactgctgttcaacgagttgcgaagaaaaggaaaagaagcaaacccttgagacctgcacctagcagggtgcttcgctctacctcggaaaagaagaataaggcacataatgagcttctaaatgatggtgctggtgttcaaccagccgaaaagaaaagaaaggtaggcagacccccaaaaggaggaactcccaaggacgattacctcatgatccgaaagcgagttagatatgttttgaatcgaatgaactatgaacaaagtttaattcaagcctatgccagtgaaggttggaaaggtcaaaggtttgtgatcgttaaacaattaatttttcttcacatactcttaccattttttatcatattggttaactgcagccatcttcttacactggtttttaatcctataaatatttagcttggaaaaaataagacctgagaaggagcttgaacgagccaaggtggaaattctgcgatgcaagtcaagaatacgggaagcttttcggaatttggattccctcctatctgagggaaagctggatgaatctatgtttgattctgctggagaaatatctagtgaagatgtaagccatcccattttgttcttgaaatctcctcacttcatgtattgtcaccttaattcagattcatcttggttgcagattttctgtgctgcatgtggttcaaaggatgttacattaaaaaatgacataattctttgtgatggaatctgcgacagagggttccaccagtattgtttaaaccctcctttgcttgctgaagatagtaatacccattacattttcctttatatattgaaagctttattagcttgtgttgttatttacctgatcaaatgtgtttttttagttccacagggggatgaaggatggctttgccctgcatgtgattgcaaaattgactgcatagatgtattaaatgaactccaaggggtcaaactctctatccatgactcttgggaggtaaaacctataaactatcctgttagtagtaatgcactatcaatcttatgttgtcttcaacataaatgagagcacataacttcatctattctttgcagaaagtttttcctgaggcagcatcctttttgaatggttctaagcaaattgatgcgtccgatcttccatcagatgattcagcagacaatgattatgaccctactttggctcaagggcacaaggtggatgaagaaaaatcttctggagaagatggtggtgaaggattagattctgatgactcatcttctgaggattctgaatcttctgagaaggaaaagtctaaaacttcacagaatggaaggacagttgatgatcttggtttgccttctgaggattcagaggatggtgactttgatccagcaggtccagattccgacaaagaacaaaatgatgaatcaaactcagatcagtcagatgaatcagattttacatctgactctgatgatttttgtgctgagattgctaaatcctgtggtcaggatgaaatctcaggcccttcatcatcacaaatcagaacagtcgatcgcaccgatggaagtggttttgatggtgagcctaatgcagaaaattcgaatcttgcatttatggagacagagctagagcaagacatggtgctaccaatttctagtaaacgacaagttgaacgtttggattacaaaaaactgtataatgtatgtatcctcatcctgtttcttctatactgtgaattggttttctcttaccaatgtttgattagttactactttcaaatctttctttctgctgtttaatgaaaaacaatctcctagtataggaaataaatgtaattgaataagaaaagacataccaagcaaacaattagggggacaaatatatggctcataagtcataatactacatgtacgctcttgtaaaaagagcactacatgtaccacctcacataggttaggtcataaactgtgcagcatcttttagtatggttgcttcctttttgtgaaccatgctttgctaccaaagtggtttttaagttatgctatgctaacatgctgataaaatactttggtgcattaatggtgttaacctggtgcatctttgatgtatatctaaacaagacattatgtgcatgcctggatgtgtatttacccatttgtgcatcttcggaattagatatattactcgcttcgctctctttaaaggggcaattgcttatttgacctcgttttgaattgtaattgccgatttgaccctactttttgaactttgcttatttgaccctcattttcgagtacgaagctctggtctgaccctattccgtttgtgtgaggtgacggtgttaattttggggtaaatagtccattttgcccttgcttatttggccctgttatatcttgtttgtttgcttgtttgacctaaagtttggataatataaaaaaaaatctctttccccggcggcggcggcggcggcgcacccgcggaggaagacggaggccggcgcgcgctgggggggagagagcggcgccctgtgctcttcgccacagcgtcgtcgtcgtcgttgccgaccggtggcggcgcgcgcagaagaagattgaggccgatgcgcgcggggagggagggagcggctccctgtgatcttcgccgtggcgtcgtcgttgtcgttgttgctgacccggcggcggtgcgcgcgcggaggaagacagaagccggcacgcagacggagggaggaaggcgctggagctcgccggcgtgcggagggcgggcggcggcatcacgcgcgcggagaaaggaggaggctggcgcgcgtggagtggtgacggcgcggcgccgaagctcaccagcttgcgggagagaggcgccgccgccgccggatctgcggctcgtacactcaacagccgccggatccaccgcttgcacaccaccacggcctgagctccaccaccgttgctcctcttcctcgtcatcgagctcaccgtcgccgccacgacagctcggcgccaccgcccccacagctcggcgtcgccgcccccacagatcggcgccgccccgcgccccatcagaccgccgccgccctccacctccacagcgggcgccggcggggctgtacatcacgccgctgccgccgcctcctcagctcgccgccgccgcccccacagatcgttgccgccgccccctcagatcggcgccgactcggaccccctcaaagcgccgccgctgccgccctccaccacaacgagtgggcgccggcggggcagtgcttgacgccgccgccgccgccccctcagctcgccgccaccgccgcccccttagctagccgccgccgctgcacgcacgagtgagagagtgagagagaggtgagaccgtgagagtcacgcacgattgagagagagagagagtcaaaatagggtttggagggtattttcgtcattaggaactcttgaaacattttctttttaaaaaaaaatcgaaccctaacggagtcatcaaaagagggtcagacggaagcttcgtactcgaaaaagagggtcaaataagcaaagttcaaaaagtagggccaaatcggcaattacagttcaaaacagggtcaaataagcaattgtccctttaaaatattaatgtaacacctgtgccttgctaatttgctattgacttagtacccagcacatcaatgtgcctttgctgcagtcgcgctggttcctttcgagttgagatctgccttagcgcattccgagcttcactgcaggccagttggcaccaataccaacattctcggcctacatcataccctaactgagaatagtgataggcctaaatctcacaccaggcattgatgaaccaaatcctattttatttcttctccagtgtttcttttctagttgtagccagagcacaagccaacatttccaacggaagcatatttgttgatgctgttttgtactaccgtttgccaatgtttattggctttacgcatgtagccctttaatgggatttacaattacaattagtgatattcaaactgatgcattcttgattaagaaaacaatcagaatctaatgcttggacattactcacttcacattttcatgtggggatctacaggaggcttatggtaaagcatcatctgattcaagtgacgatgaagagtggtatggaaatagtacacccgaaaaaggtaatttagaagacagtgaaacagattcgcttgctgaatcacctcagggtggaaaaggattctctagaagagcaccagttaggtaccataataatgaacatactccacagaatgtaaggcccggtggttcagtaagcgaccagcaaactgaagtactttgctccaatagcaatggtagcacagccaaaaacagacattttggtcctgcaattaatcaggtataaatatcaaataatcaaatgtctcattatgttagacaatctccagtcaacaaataagtgatgctttgggagctgcatggtcaaactttatgattctaactattgttatctctagggatattagatcatgcataatctaaagtgtaggtttgtctcaaaagtacttttgtaatattatacttttatcattctttataaacatatcgtacaacaaaaactagctgaattcgtcatgcaattacgtaggactaaattaaagtttactttgaagtattgttaggtagacaatctacttcagaatttgcatgggaatcaaattgcttgtttattttgttttattctgcattccagttattcttgtattgtatttggtgtgaactcttctaatatatttcaatccaagtttcagatatttattagttgtatttgacatgaattatttgttataatctatagaattttgtaatctggaccctcaggattgtcaatattgtagattcttttttccttttctccgatgatctggtaatatttaggccttgagaaataagaatgaacatggactccttcccaacttgttttaataaaatatgtagtagattggagaagtgaaagttaagttttgaacactgtcaatgcctaaaccaacctttatttgtcactggagagtatattgcttacattactaaattgatcattttttcatgcagaaactgaaggcacatttcaaggaagatccataccctagtcgtgcaacaaaagaaaatctggcacaagagttaggcctcacatttaatcaggttttaaaacagtgatctttgttcttcctcccatgagcacttcgcagggctgtcactgtatctctcctccttaatagagtttctgttgacaggtcactaaatggttttccagtactcgtcattacgcaagagtggcagccacaaaaaaggagaacaacattgaaaatcatacggctgagaataataacaataccaacactgttgatagcatacaactgagaggatccaatgatattgttagtgtagatagaaatgatatggtctccgaggaaaggacaggacaaagtaatctcaatgaaggtactccattaagatcagataccagctgtgggcagagtgtggctgtgactcctatggtacacccagaaaaccagggcaatgattcctcaagtaatgttagaacaccaaatgctaagtctgcggagaaattgatccctggactggaaaattcagatgaggctaggcgaaaggcggtacaacgggaactgagaaagatgaagactggcaggtgaaactccctagtgttcgagttatttgaccagatgtgcagagaagcaagtttttgtatgctgcctagattgcttttaatcagatgtgcagagaagcaaagattttttttccttcttgtttgtggtcgcaaaaaagcctgattgttgtagctgctatgtttgttccctttggctgtccatccagaatttctgataagatgacacttggaagcacatcctgcagcactccagttacaggaatgggttcagttgactgtaacagtttagcatagtccgtagtggacagtagctgtgttgtttgtcgtgccctgtagtcctgtactaccttgaattaggactgctaagtgaaccgatacaagtacttgtgactgaaatctatacctctttttttctttccaccttgggaatttgtagaacaaaaccgatgtctgatgatatgctatctaggaatagcaactgttgtatttttgttcctgtttagggagatttagattctgatgagc</dnaseqindica>|
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| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001063749.1 RefSeq:Os06g0229300]|
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| − | }}
| |
| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 6]]
| |
| − | [[Category:Chromosome 6]]
| |
