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| − | {{JaponicaGene|
| + | The rice '''''Os06g0583400''''' was reported as '''''OsHDAC1''''' in 2002 <ref name="ref1" /> by researchers from Korea. |
| − | GeneName = Os06g0583400|
| + | |
| − | Description = Similar to Histone deacetylase (Fragment)|
| + | ==Annotated Information== |
| − | Version = NM_001064478.1 GI:115468687 GeneID:4341387|
| + | ===Gene Symbol=== |
| − | Length = 5838 bp|
| + | *'''''Os06g0583400''''' '''''<=>''''' '''''OsHDAC1''''','''''HDAC1, HDA702''''' |
| − | Definition = Oryza sativa Japonica Group Os06g0583400, complete gene.|
| + | |
| − | Source = Oryza sativa Japonica Group
| + | ===Function=== |
| | + | * Histone deacetylases (HDACs) modulate chromatin structure and transcription. |
| | + | * HDACs have been studied as negative regulators in eukaryotic transcription. |
| | + | * The '''''OsHDAC1''''' gene encoded a protein of approximately 57 kDa that shared 73.5%, 72.7%, 79.9%, and 57.1% amino acid sequence identity with the '''''OsHDAC2, OsHDAC3''''', maize '''''RPD3''''', and human '''''HDAC1''''' proteins, respectively. |
| | + | * '''''OsHDAC1''''' functions in the genome-wide programming of gene expression. |
| | + | |
| | + | ===Expression=== |
| | + | * '''''OsHDAC1''''' was expressed at similar levels in the leaves, roots, and callus cells, whereas '''''OsHDAC2''''' and '''''OsHDAC3''''' were expressed in the roots and callus cells, but not in the leaves, exhibiting distinct tissue specificity. |
| | + | |
| | + | ===Evolution=== |
| | + | * Genomic structures and Southern blot analyses revealed that '''''OsHDAC1''''', '''''OsHDAC2''''', '''''OsHDAC3''''' contained seven, six, and seven exons, respectively, and constituted a class I-type family in the rice genome. |
| | + | |
| | + | ==Labs working on this gene== |
| | + | * Department of Biological Science, Myongji University, Yongin 449-728, Korea, and |
| | + | * Department of Bioscience and Biotechnology, Sejong University, Seoul 143-747, Korea |
| | + | |
| | + | ==References== |
| | + | <references> |
| | + | * <ref name="ref1"> |
| | + | Jang IC, Pahk YM, Song SI, Kwon HJ, Nahm BH, Kim JK. Structure and expression |
| | + | of the rice class-I type histone deacetylase genes OsHDAC1-3: OsHDAC1 |
| | + | overexpression in transgenic plants leads to increased growth rate and altered |
| | + | architecture. Plant J. 2003 Feb;33(3):531-41. PubMed PMID: 12581311.</ref> |
| | + | </references> |
| | + | |
| | + | ==Structured Information== |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
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| − | |
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| − | Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
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| − | AP = Chromosome 6:23671362..23677199|
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| − | CDS = 23671839..23671946,23672074..23672154,23674571..23674634,23674728..23674819,23675373..23675603<br>,23676061..23676501,23676577..23677116|
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| − | GCID = <gbrowseImage1>
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| − | name=NC_008399:23671362..23677199
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| − | source=RiceChromosome06
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| − | preset=GeneLocation
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| − | </gbrowseImage1>|
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| − | GSID = <gbrowseImage2>
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| − | name=NC_008399:23671362..23677199
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| − | source=RiceChromosome06
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage2>|
| |
| − | CDNA = <cdnaseq>atggacgcctccgccggaggcggggggaactcgctgccgacggcgggggccgacggggccaagcggcgggtgtgctacttctacgacgcggaggtggggaactactactacgggcaggggcacccgatgaagccgcaccgcatccggatgacccacgcgctgctcgcccactacggcctcctcgaccagatgcaggtgctcaagccccacccggcgcgcgaccgcgacctctgccgcttccacgccgacgactacgtcgccttcctccgctccgtcacgccggagacccagcaggaccagatccgggcgctcaagcgcttcaacgtcggcgaggactgccccgtcttcgacggcctctacagcttctgccagacctacgccgggggatccgtcggcggcgccgtcaagctcaaccacggccacgacatcgccatcaactgggccggcggcctccaccacgccaagaagtgcgaggcctcgggattctgctacgtcaacgacatcgtcctcgccatcctcgagctcctcaaataccaccagcgtgttctctatgtggatatcgatatccaccatggggatggtgtggaggaggcgttctacacgacggacagggtgatgacggtctcgttccacaagtttggggattatttcccggggaccggggacattcgcgatattgggcactcaaaggggaagtattactctctgaatgtcccgttggacgacggtatcgacgacgagagctaccagtcgttgttcaagccgatcatggggaaggtgatggaggtttttcgccctggcgcggtggtgctccagtgcggtgcggactctctgtcgggtgataggttgggttgcttcaacctgtcaatcaggggccacgcggaatgcgtgagattcatgaggtccttcaatgtcccgctgttgctgcttggtggtggtgggtataccataagaaatgttgcgcggtgttggtgctatgagacaggagttgcacttggtcatgagctcactgacaagatgcctccaaatgagtattttgagtactttggtccagattatacacttcatgttgcaccaagtaacatggagaacaaaaacacacgccagcagttggatgatataagatcaagacttcttgataatctttcaaaacttcgacatgctcctagcgtccaatttcaagagcgaccccctgaggctgagctacctgagcaagatgaagaccaagaggatcctgatgaaaggcaccatgctgattctgatgtggaaatggatgatgtcaaacctttggatgactcaggaaggaggagcagtattcagaatgtgagagttaagagagagtctgctgaaacagatgccgcagatcaggatggtaatagggtcgctgcagagaacaccaagggcacagaacctgcggctgatggagttggttcctcgaaacaaactgttcctaccgatgcaagtgcgatggccatagacgaaccaggctccctgaaagtcgagccagataactcaaacaaattgcaagatcaaccatcggtgcaccagaagacataa</cdnaseq>|
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| − | AA = <aaseq>MDASAGGGGNSLPTAGADGAKRRVCYFYDAEVGNYYYGQGHPMK PHRIRMTHALLAHYGLLDQMQVLKPHPARDRDLCRFHADDYVAFLRSVTPETQQDQIR ALKRFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHGHDIAINWAGGLHHAKKCEAS GFCYVNDIVLAILELLKYHQRVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFP GTGDIRDIGHSKGKYYSLNVPLDDGIDDESYQSLFKPIMGKVMEVFRPGAVVLQCGAD SLSGDRLGCFNLSIRGHAECVRFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGH ELTDKMPPNEYFEYFGPDYTLHVAPSNMENKNTRQQLDDIRSRLLDNLSKLRHAPSVQ FQERPPEAELPEQDEDQEDPDERHHADSDVEMDDVKPLDDSGRRSSIQNVRVKRESAE TDAADQDGNRVAAENTKGTEPAADGVGSSKQTVPTDASAMAIDEPGSLKVEPDNSNKL QDQPSVHQKT</aaseq>|
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| − | DNA = <dnaseqindica>5254..5361#5046..5126#2566..2629#2381..2472#1597..1827#699..1139#84..623#aggagagggcaaagaggggaaaagaaaaaaaaaagagataaaaaaaaaatctcctcctcctcgccgccgccgccgccgccgccatggacgcctccgccggaggcggggggaactcgctgccgacggcgggggccgacggggccaagcggcgggtgtgctacttctacgacgcggaggtggggaactactactacgggcaggggcacccgatgaagccgcaccgcatccggatgacccacgcgctgctcgcccactacggcctcctcgaccagatgcaggtgctcaagccccacccggcgcgcgaccgcgacctctgccgcttccacgccgacgactacgtcgccttcctccgctccgtcacgccggagacccagcaggaccagatccgggcgctcaagcgcttcaacgtcggcgaggactgccccgtcttcgacggcctctacagcttctgccagacctacgccgggggatccgtcggcggcgccgtcaagctcaaccacggccacgacatcgccatcaactgggccggcggcctccaccacgccaagaagtgcgaggcctcgggattctgctacgtcaacgacatcgtcctcgccatcctcgagctcctcaaataccaccaggttctctcgcgctggagagcctaataatcttgcggaattagggttttgggtgtgctaattgtttttgtattgcagcgtgttctctatgtggatatcgatatccaccatggggatggtgtggaggaggcgttctacacgacggacagggtgatgacggtctcgttccacaagtttggggattatttcccggggaccggggacattcgcgatattgggcactcaaaggggaagtattactctctgaatgtcccgttggacgacggtatcgacgacgagagctaccagtcgttgttcaagccgatcatggggaaggtgatggaggtttttcgccctggcgcggtggtgctccagtgcggtgcggactctctgtcgggtgataggttgggttgcttcaacctgtcaatcaggggccacgcggaatgcgtgagattcatgaggtccttcaatgtcccgctgttgctgcttggtggtggtgggtataccataagaaatgttgcgcggtgttggtgctatgaggtatgtatcaggggcatttcctggacatacatttctctgttgtttttgtttgaagagccttcactaatttattaactttaaagatgtatgaaatggcatagttcttctagcatccattttagcgccggcactatgcctgacatgtgtatgtagcaccttggacaactgttttgactaagcgactcacatctataagtacttatgtaaaaaaacctctgttaatcatttcaaactgttatagctattctaataagcacaactcactctgtgatgaactactatggattgtttgataattattgtacttttaatcactgaaatctaacagtatataaccaatgattgtctgagaattttatgaaatactttgagcttctaatgcttttagacgcatgtttcttttattgtaatcattattttcccgtatggtcttatttttctccttatgtttatgcagacaggagttgcacttggtcatgagctcactgacaagatgcctccaaatgagtattttgagtactttggtccagattatacacttcatgttgcaccaagtaacatggagaacaaaaacacacgccagcagttggatgatataagatcaagacttcttgataatctttcaaaacttcgacatgctcctagcgtccaatttcaagagcgaccccctgaggctgagctacctgaggtgagtgagaaattattggcattatggttcttttttgtcctgtagaattcctcagcttcaaggataaaggagtataaggcgtctttctagtagttgctgtaaataataatatttcacaatttgtatgaattgtaaatgtcagctccggaaatatcaggaatgccaaattgacaggtggttagttatttttacatgattgaattttgaaaagttcgttttttttgttttatggtcaaaagctttatattatggtatggattatctatgcagattttttcatgcttgaagtaatctgtcatgtgtgctctaatgctggcacttcacattctgttaataatgttcaaatcgactttgaattttcaagctgaatgcatataatttaaattactaattcctagcataaggaccagttgtctgatgtgtctcagtttatagctttgaaactttacaagtgttgtaagatgcccagtggcatgcccatattgattatggatgtagtttcgaaagtgagaggaaggattttcgcttagttacatctatgtgtctcgtgcagcaagatgaagaccaagaggatcctgatgaaaggcaccatgctgattctgatgtggaaatggatgatgtcaaacctttggatgactcaggaaggtatttgtttctattcagttctgtaaccgttcaggggattctagcagttagaatcatatgacatggtctgatgtatatccttttgtcttttaggaggagcagtattcagaatgtgagagttaagagagagtctgctgaaacagatgccgcagatcaggtatttttctattaaaactcattgaagtaatgttatgtgctggtggtgacagttgttatggttaatgtgtgctcaaaggtgtgtaagcagctatactttctttcatgaatagtgtattctgctgtttgttcctttctgaatggttgttgcatcttcagagagcatattgatattaaatagccgtggactgcgaaagacatcaattgtgagttgatgtgttgtgatgttgaatattttgaattttaatccttgctgtagcgacagttctgaaatttatatactcaacttttcaaattaaacactaaggattggaagagctgaatcatcatagcgaagtaaaggacaactattatgatgtgactatacaacatgaaaatctaatttcatttttctggataatgcatcagtaccatattcgtttgtctgtatcatggtttcttttatggtcctcgggtgttggtattagtttttcaaccttagcccttaattttagttaaggttgtaagatgaatgaagctatataggatccagcattgtttgattcttgagagtcagatatttaattcagatttctcaaatgttctgatgcacatttgcacccggttgggacttatttctaatagtaattctatttgataagtgatttgcataggcttcaaaagtataatttgacagtttgaccattaacttctcttacaatatattgttagtggcaacaaaaccaattcatgtggaagcacttccgaatatgaatccactggtacaacttttgtacagtaaacttgcaaatataatttgactcattgttggttagagcttacaaaatttgacttttcaagtacatggacgagttagggcaaagggaataccttttctttgcaagtgcaaatctaatttatcaattcactgtggttatgtatatcaaataatttcctcggacttgtgaaagtttgatgctcccatgttctaccgttggtcttttgctgttggtgcagttctagtaaaagaattgttgcattgatcatttaacgtcttatagtgaatcctttattggcaccaaaaagtgttattccctcgtatggaatcaaataaaaaaattatccatctcgtcaatggtcttgtttggtagaacaccgcagcagctacagtggctgcagcgggacacgcttacagttctgcttgatgaccatccactgcggtgctgccgctgttctgctcgggctgtgctgtacagtaaaaagcgctgcatgttggcctacctagcaggcccaatgtgtgctcttccgggtgctacacaagcaccgaacaggatcattgcatctaggcaacaactgcctactgcctccacagagcaatgctgtctcggtggcaatgccaatatagaaaaaaaatgcatgacaaaataggaaaaaaaatattaccacacagcttaagtttttcaaacaccagagaaaaaaaaaagagtggtgtaatttcgaaatgtagttggacctgcaagatatggacaagctgtgaggaagtggttagctcagctcacacattggagaccgcaaagagggcatgtatccaaagattcggagattcatatcctgttcttccatgagccccaaatcagtgaagtttgtcatttcaggcctaccaggaggagctacacccagggtcgggcagcacaagtgccggcacacaaccctgctgcaacatgctctgcacaacttcatcgcccttaccatggttgacctcatctggaggaaggggcaccagagttgagtcacaatccaccatggcatggcgagcaggaggtggagtgtagcatgacggatgttaagtgcggtggcagctcaatacggtatccaaggctggtgggaggagcgagatttgtagagatgaggaaaaataatagataagagatgatgctgacaagtgggctcaggggcattttaccatttgcttacactactgacaaactctgctaatggcaatttttaacggtggcgtccgtagtggcttatgagggatgtgaaaaattgctcggtaatataagggaagcatctaatttagatgtcgaataaggaaacttgttaatttcagatgtcaaataaggaattttctcttcagatgtccttgttcttttctgattaagattcagattttaccttggtttctgttaggacgcttttcaaactactaaacggtgtgttcctgtgaaaactttctatatataagttgctttaaaatatcaaatatatccatttgtcaagtttgtaataattaaaatttaattaatcatgtgctaatggttttctcgttttacgtacgtcaacttaatcctcatcttcatcttcatcagtgaaaacttaatcttcaacttaatcattctctgttggtaatagtttgccttgttatttgtatgttgcaggatggtaatagggtcgctgcagagaacaccaagggcacagaacctgcggctgatggagttggttcctcgaaacaaactgttgtaagtgctcttttatttgtgcaaacttgtaatcttgcaaaaggtagacttgcacgtaagtgaactgtcatggatctctgtggtaacaacggctgccttttcatgttttgctctttgacaactgcagcctaccgatgcaagtgcgatggccatagacgaaccaggctccctgaaagtcgagccagataactcaaacaaattgcaagatcaaccatcggtgcaccagaagacataatagttctctctaccttaaaacttagtaactgatgccatctatcatccattgattatattggagaaactcccaactttgaagcagagagttcatgccataccaaaagttatataccaaatttcgaatggtatgtacacctttcgaactggtggtgttttgtgcaatacatttatgccaggctgactattatgtggtatctattattagctttagtttaaccctgtctgctgtcgagcaatcggtatagtcgtgcaatatattctggatctatcaagcaatgtgagacggatgtcaaaccattggttgtgacttcagcaatgtatgtatatgtaagtatagggacaggcagcaggcgttactttggtggaagctacaagctttgtctctcttctcatccctaatacctacgtggggtgcgtctcgttgttgtttaggtattactgcattcttaaaagtgctcatttagggtgaaattct</dnaseqindica>|
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| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064478.1 RefSeq:Os06g0583400]|
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| − | }}
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| | [[Category:Genes]] | | [[Category:Genes]] |
| | [[Category:Japonica mRNA]] | | [[Category:Japonica mRNA]] |
