Difference between revisions of "Os01g0178600"

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(Created page with "{{JaponicaGene| GeneName = Os01g0178600| Description = Peptidase A1, pepsin family protein| Version = NM_001048728.1 GI:115434869 GeneID:4323872| Length = 1365 bp| Defini...")
 
 
(2 intermediate revisions by 2 users not shown)
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{{JaponicaGene|
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The rice '''''Os01g0178600''''' was reported as '''''OsCDR1''''' in 2009 <ref name="ref1" /> by researchers from India.  
GeneName = Os01g0178600|
 
Description = Peptidase A1, pepsin family protein|
 
Version = NM_001048728.1 GI:115434869 GeneID:4323872|
 
Length = 1365 bp|
 
Definition = Oryza sativa Japonica Group Os01g0178600, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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===Gene Symbol===
            clade; Ehrhartoideae; Oryzeae; Oryza.
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*'''''Os01g0178600''''' '''<=>''' '''''OsCDR1'''''
|
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Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|
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===Function===
AP = Chromosome 1:4080316..4081680|
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* Plant aspartic proteases (AP) play key roles in the regulation of biological processes, such as the recognition of pathogens and pests and the induction of effective defense responses.
CDS = 4080316..4081680|
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* The rice '''''OsCDR1''''' from encodes a predicted aspartate protease.
GCID = <gbrowseImage1>
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* The rice '''''OsCDR1''''' plays an important role during the disease resistance response.
name=NC_008394:4080316..4081680
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source=RiceChromosome01
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===Phenotypic analysis===
preset=GeneLocation
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* Ectopic expression of '''''OsCDR1''''' in Arabidopsis and rice conferred enhanced resistance against bacterial and fungal pathogens.
</gbrowseImage1>|
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* The enhanced disease resistance observed in transgenic plants was correlated with induction of patho-genesis-related gene expression and was shown by mutational analysis to be dependent on AP activity of the trans-gene-encoded product.
GSID = <gbrowseImage2>
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* OsCDR1 accumulates in intercellular fluids (IF) in transgenic plants.
name=NC_008394:4080316..4081680
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* Infiltration of IF from trans-genic Arabidopsis plants into leaves of wild-type (WT) Arabidopsis induced the systemic defense response.
source=RiceChromosome01
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preset=GeneLocation
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===Expression===
</gbrowseImage2>|
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* Expression of OsCDR1 was activated upon treatments with benzothiadiazole and salicylic acid, which are signal molecules in plant disease resistance responses.
CDNA = <cdnaseq>atggcggccatggcgccttcctccgtgctcgtgctcctcggcgtcgtcctcctcgtcgccggcgggaggctgtgcgagtgcgcggcgagcggcggcggattcagcgtggagttcatccaccgtgactcacccaggtcgccgttccatgacccggcgttcaccgcccacggccgcgcgctcgcggcggcgcggcggtccgtggcgcgcgccgccgcgatcgcgggctccgcctcctcctccgcctccggcggcggcgcggcggacgacgtcgtgtcgaaggtcgtgtcccggtcgttcgagtacctcatgacggtcaacctcggctcgccgccgcgctcgatgctggccatcgccgacacgggcagcgacctcgtgtgggtgaagtgcaagaaggggaacaacgacacctcatcggcggcggcgccgacgacgcagttcgacccgtcccggtcgtcgacgtacggccgcgtgagctgccaaaccgacgcctgcgaggcgctcggccgcgccacctgcgacgacgggtcgaactgcgcctacctctacgcctacggcgacgggtcgaacaccaccggcgtcctctccaccgaaaccttcaccttcgacgacggcggctcggggaggagcccccgccaggtgcgcgtcggcggcgtcaagttcggctgctccaccgcgacggccggctcgttcccggccgacggtctggtcggcctcggcggcggcgcggtctccctcgtgacgcagctcggcggcgcgacgtcgctcgggcggagattctcctactgcctcgtcccgcactccgtcaacgcctcgtcggcgctcaacttcggcgccctcgccgacgtcaccgagcccggcgcggcgagcacgccgctcgtcgccggcgacgtggacacgtactacaccgtggtcctcgactccgtcaaggtcgggaacaagacggtggcgtcggcggcgagctcccgcatcatcgtggactccggcacgacgctgacgttcctcgacccgtcgctgctggggccgatcgtcgacgagctctcccgccggatcacgctgccgccggtgcagtcgccggacgggctgctgcagctgtgctacaacgttgccgggcgggaggtggaggccggcgagagcatcccggacttgacgctggagttcggcggcggcgcggcggtggcgctgaagccggagaacgcgttcgtggcggtgcaggaggggacgctgtgcctggcaatcgtggcgacgacggagcagcagccggtgtccatcctcgggaacctcgcgcagcagaacatccacgtcggctacgacctcgacgccggcacggtcaccttcgccggcgccgactgcgccggctcatcctag</cdnaseq>|
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AA = <aaseq>MAAMAPSSVLVLLGVVLLVAGGRLCECAASGGGFSVEFIHRDSP                    RSPFHDPAFTAHGRALAAARRSVARAAAIAGSASSSASGGGAADDVVSKVVSRSFEYL                    MTVNLGSPPRSMLAIADTGSDLVWVKCKKGNNDTSSAAAPTTQFDPSRSSTYGRVSCQ                    TDACEALGRATCDDGSNCAYLYAYGDGSNTTGVLSTETFTFDDGGSGRSPRQVRVGGV                    KFGCSTATAGSFPADGLVGLGGGAVSLVTQLGGATSLGRRFSYCLVPHSVNASSALNF                    GALADVTEPGAASTPLVAGDVDTYYTVVLDSVKVGNKTVASAASSRIIVDSGTTLTFL                    DPSLLGPIVDELSRRITLPPVQSPDGLLQLCYNVAGREVEAGESIPDLTLEFGGGAAV                    ALKPENAFVAVQEGTLCLAIVATTEQQPVSILGNLAQQNIHVGYDLDAGTVTFAGADC                    AGSS</aaseq>|
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You can also add sub-section(s) at will.
DNA = <dnaseqindica>1..1365#atggcggccatggcgccttcctccgtgctcgtgctcctcggcgtcgtcctcctcgtcgccggcgggaggctgtgcgagtgcgcggcgagcggcggcggattcagcgtggagttcatccaccgtgactcacccaggtcgccgttccatgacccggcgttcaccgcccacggccgcgcgctcgcggcggcgcggcggtccgtggcgcgcgccgccgcgatcgcgggctccgcctcctcctccgcctccggcggcggcgcggcggacgacgtcgtgtcgaaggtcgtgtcccggtcgttcgagtacctcatgacggtcaacctcggctcgccgccgcgctcgatgctggccatcgccgacacgggcagcgacctcgtgtgggtgaagtgcaagaaggggaacaacgacacctcatcggcggcggcgccgacgacgcagttcgacccgtcccggtcgtcgacgtacggccgcgtgagctgccaaaccgacgcctgcgaggcgctcggccgcgccacctgcgacgacgggtcgaactgcgcctacctctacgcctacggcgacgggtcgaacaccaccggcgtcctctccaccgaaaccttcaccttcgacgacggcggctcggggaggagcccccgccaggtgcgcgtcggcggcgtcaagttcggctgctccaccgcgacggccggctcgttcccggccgacggtctggtcggcctcggcggcggcgcggtctccctcgtgacgcagctcggcggcgcgacgtcgctcgggcggagattctcctactgcctcgtcccgcactccgtcaacgcctcgtcggcgctcaacttcggcgccctcgccgacgtcaccgagcccggcgcggcgagcacgccgctcgtcgccggcgacgtggacacgtactacaccgtggtcctcgactccgtcaaggtcgggaacaagacggtggcgtcggcggcgagctcccgcatcatcgtggactccggcacgacgctgacgttcctcgacccgtcgctgctggggccgatcgtcgacgagctctcccgccggatcacgctgccgccggtgcagtcgccggacgggctgctgcagctgtgctacaacgttgccgggcgggaggtggaggccggcgagagcatcccggacttgacgctggagttcggcggcggcgcggcggtggcgctgaagccggagaacgcgttcgtggcggtgcaggaggggacgctgtgcctggcaatcgtggcgacgacggagcagcagccggtgtccatcctcgggaacctcgcgcagcagaacatccacgtcggctacgacctcgacgccggcacggtcaccttcgccggcgccgactgcgccggctcatcctag</dnaseqindica>|
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Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001048728.1 RefSeq:Os01g0178600]|
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==Labs working on this gene==
}}
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* Genome Research Centre, Department of Microbiology and Biotechnology Centre, Faculty of Science, The M. S. University of Baroda, Vadodara, Gujarat-390002, India;
[[Category:Genes]]
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* John Innes Centre, Norwich Research Park, Colney, Norwich NR4 7UH, U.K.
[[Category:Japonica mRNA]]
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==References==
[[Category:Oryza Sativa Japonica Group]]
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<references>
[[Category:Japonica Genes]]
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* <ref name="ref1">
[[Category:Japonica Chromosome 1]]
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Prasad BD, Creissen G, Lamb C, Chattoo BB. Overexpression of rice (Oryza
[[Category:Chromosome 1]]
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sativa L.) OsCDR1 leads to constitutive activation of defense responses in rice
 +
and Arabidopsis. Mol Plant Microbe Interact. 2009 Dec;22(12):1635-44. doi:
 +
10.1094/MPMI-22-12-1635. PubMed PMID: 19888828.
 +
</ref>
 +
</references>
 +
 
 +
==Structured Information==
 +
    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 1]]

Latest revision as of 06:19, 6 March 2017

The rice Os01g0178600 was reported as OsCDR1 in 2009 [1] by researchers from India.

Annotated Information

Gene Symbol

  • Os01g0178600 <=> OsCDR1

Function

  • Plant aspartic proteases (AP) play key roles in the regulation of biological processes, such as the recognition of pathogens and pests and the induction of effective defense responses.
  • The rice OsCDR1 from encodes a predicted aspartate protease.
  • The rice OsCDR1 plays an important role during the disease resistance response.

Phenotypic analysis

  • Ectopic expression of OsCDR1 in Arabidopsis and rice conferred enhanced resistance against bacterial and fungal pathogens.
  • The enhanced disease resistance observed in transgenic plants was correlated with induction of patho-genesis-related gene expression and was shown by mutational analysis to be dependent on AP activity of the trans-gene-encoded product.
  • OsCDR1 accumulates in intercellular fluids (IF) in transgenic plants.
  • Infiltration of IF from trans-genic Arabidopsis plants into leaves of wild-type (WT) Arabidopsis induced the systemic defense response.

Expression

  • Expression of OsCDR1 was activated upon treatments with benzothiadiazole and salicylic acid, which are signal molecules in plant disease resistance responses.

You can also add sub-section(s) at will.

Labs working on this gene

  • Genome Research Centre, Department of Microbiology and Biotechnology Centre, Faculty of Science, The M. S. University of Baroda, Vadodara, Gujarat-390002, India;
  • John Innes Centre, Norwich Research Park, Colney, Norwich NR4 7UH, U.K.

References

  1. Prasad BD, Creissen G, Lamb C, Chattoo BB. Overexpression of rice (Oryza sativa L.) OsCDR1 leads to constitutive activation of defense responses in rice and Arabidopsis. Mol Plant Microbe Interact. 2009 Dec;22(12):1635-44. doi: 10.1094/MPMI-22-12-1635. PubMed PMID: 19888828.

Structured Information