Difference between revisions of "Os02g0198300"

From RiceWiki
Jump to: navigation, search
 
(One intermediate revision by one other user not shown)
Line 1: Line 1:
Please input one-sentence summary here.
+
The rice '''''Os02g0198300''''' was reported as '''''OsAGAP,''''' in 206 <ref name="ref1" /> by researchers from China.  
  
 
==Annotated Information==
 
==Annotated Information==
 
===Function===
 
===Function===
Please input function information here.
+
* Development and organogenesis in both dicot and monocot plants are highly dependent on polar auxin transport (PAT), which requires the proper asymmetric localization of both auxin influx and efflux carriers.
 +
* The rice '''''OsAGAP''''' is an ARF-GTPase-activating protein (ARF-GAP) in rice, impaired PAT and interfered with both primary and lateral root development.
 +
* '''''OsAGAP''''' has a specific role in regulating vesicle trafficking pathways such as the auxin influx pathway, which in turn controls auxin-dependent root growth in plants.
  
===Expression===
+
===Phenotypic analysis===
Please input expression information here.
+
* The lateral root phenotype could be rescued by the membrane-permeable auxin 1-naphthyl acetic acid, but not by indole 3-acetic acid (IAA) or by 2,4-dichloro-phenoxyacetic acid, which require influx facilitators to enter the cells.
 +
* OsAGAP-over-expressing plants had alterations in vesicle trafficking and localization of the presumptive A. thaliana auxin-influx carrier AUX1, but not in the localization of the auxin efflux facilitators.
  
===Evolution===
 
Please input evolution information here.
 
  
 
You can also add sub-section(s) at will.
 
You can also add sub-section(s) at will.
  
 
==Labs working on this gene==
 
==Labs working on this gene==
Please input related labs here.
+
* Key Laboratory of Photosynthesis and Molecular Environmental Physiology, Institute of Botany, Chinese Academy of Sciences,
 
+
Beijing 100093, China,
 +
* Graduate School of the Chinese Academy of Sciences, Beijing 100093, China,
 +
* Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of
 +
Sciences, Beijing 100086, China, and
 +
* National Plant Gene Research Center, Beijing 100093, China
 
==References==
 
==References==
Please input cited references here.
+
<references>
 +
* <ref name="ref1">
 +
Zhuang X, Jiang J, Li J, Ma Q, Xu Y, Xue Y, Xu Z, Chong K. Over-expression of
 +
OsAGAP, an ARF-GAP, interferes with auxin influx, vesicle trafficking and root
 +
development. Plant J. 2006 Nov;48(4):581-91. PubMed PMID: 17059407.
  
 +
</ref>
 +
</references>
 
==Structured Information==
 
==Structured Information==
{{JaponicaGene|
+
    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]
GeneName = Os02g0198300|
 
Description = Arf GTPase activating protein family protein|
 
Version = NM_001052741.2 GI:297598777 GeneID:4328629|
 
Length = 3339 bp|
 
Definition = Oryza sativa Japonica Group Os02g0198300, complete gene.|
 
Source = Oryza sativa Japonica Group
 
 
 
  ORGANISM  Oryza sativa Japonica Group
 
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
 
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
 
            clade; Ehrhartoideae; Oryzeae; Oryza.
 
|
 
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
 
AP = Chromosome 2:5505087..5508425|
 
CDS = 5505630..5505654,5505965..5506049,5506444..5506519,5506694..5506857,5507059..5507176<br>,5507283..5507399,5507543..5507638,5507905..5508186|
 
GCID = <gbrowseImage1>
 
name=NC_008395:5505087..5508425
 
source=RiceChromosome02
 
preset=GeneLocation
 
</gbrowseImage1>|
 
GSID = <gbrowseImage2>
 
name=NC_008395:5505087..5508425
 
source=RiceChromosome02
 
preset=GeneLocation
 
</gbrowseImage2>|
 
CDNA = <cdnaseq>atgagtggaagacgtgatgattcagctaagatggcaaaactgaaggagctattgcacagaagtgaaaaccgtatctgtgctgactgcagcgcgcctgaccccaaatgggcatcagctaatataggagtattcatatgcctcaagtgttccggtgttcacagaagtcttggcacacacatttcaaaggttctgtcagtcacactagatcagtggagtgacaatgaaattgataacgtgatcgaagtcggtggaaattctcacgccaatgctatatatgaaaccttcctgccgcagaaccacagcaagccacatccagattctacccaggaagagcgagaaaaattcatcaggtcaaaatatgagttacaagagtttcttgagccaagcctacggattgtttctcatcagtctagcgactccgggaaacatgcaggcagtgcctcccattctgtcagttccaagagcgaagtaggcatgattgagttcatcggaatattgaatgtcaaggtgaaaggaggcaccaacctagccatcagagacatgtcaagcagtgatccttatgtagtcctgacccttgggcaacagaaagcgcaaacctcggtgatcaaagccaacctgaaccctgtctggaacgaagaactcaagctctctgttcctcagcaatacggccctctcaaactgcaagtgttcgaccacgacatgctgtccaaggacgacctgatgggggaggccgagatcgacctgcagccgatgatcaacgcggcggcggcgttcggcgacccggggctgctcggcgaccggcagatcggccggtggctcaagtccggcgacaacgcgctcgtcagggacagcgccgtcgtggtcgccggcggcgaggtgaggcaggagctggccctcaagctgcagttcaccgagtccggcgaggtggagctggagatgcagtggtttccactcaacatgtag</cdnaseq>|
 
AA = <aaseq>MSGRRDDSAKMAKLKELLHRSENRICADCSAPDPKWASANIGVF                    ICLKCSGVHRSLGTHISKVLSVTLDQWSDNEIDNVIEVGGNSHANAIYETFLPQNHSK                    PHPDSTQEEREKFIRSKYELQEFLEPSLRIVSHQSSDSGKHAGSASHSVSSKSEVGMI                    EFIGILNVKVKGGTNLAIRDMSSSDPYVVLTLGQQKAQTSVIKANLNPVWNEELKLSV                    PQQYGPLKLQVFDHDMLSKDDLMGEAEIDLQPMINAAAAFGDPGLLGDRQIGRWLKSG                    DNALVRDSAVVVAGGEVRQELALKLQFTESGEVELEMQWFPLNM</aaseq>|
 
DNA = <dnaseqindica>544..568#879..963#1358..1433#1608..1771#1973..2090#2197..2313#2457..2552#2819..3100#accgaccaatccccatggagctgctgctgtaatccacacgacagagtcagagatctggggactaagtcccaagaacatccctccctcccctcccagccaggagaaatccaaggtaatccagaatctcccttgagcattcctgcaaatcctgggttttttttttcaattcttggtttcttgatgtctctcaagtataggcgatatcctgaattcctttcatcatggttaggctgttcttagcgctttgctgaattgcatttcttcgaattcatttcatcgcgctgcaccgattgctgttcttctatggatttgacactgaaaaagggggacagcgtgattcactcgagttgagatttctcaggtgtcaaaaggcaaaacgacattgatgcatgagtgttcttggatgcttctttacatatgtagcaggaaactataggatgaggaaaaggaactccttgaagttcagtatttctgtttggttgatgcatatttgcaggactgaaaacattggaaagtgtaactaagcagtaagaagatctgaatatgagtggaagacgtgatgattcaggtacttttaccatcaggcactgagcattcactttctttatcactgcattgaattgcataatatgctcctgctgccctcaaaagagcaaattggagaatcagtcatattgcacagtgaagtgaataatgtgtggtgatcatgcacaaattggtgaccaaaaacaaaattctgcaacttcttggagtacttcagatttggtcattttcaatgggtgtgcatttactagtttgctctttagtgctgacagataagattttgccggtggagaaggtcttgcatgatgaattcatatttcatttttctcatgcagctaagatggcaaaactgaaggagctattgcacagaagtgaaaaccgtatctgtgctgactgcagcgcgcctgaccccaaatgggcgtaagtattttcaacctgattcaaactatctgcagagcatctgattcccagtggctgtaagactttgtagaacctgattgttcaatttgaatcagttggtggtttaagtgatcactagtaattagtttgttttcatatccttgctgtgtttttgtttgtatcctcttctcttctatttattttctctggcaatggtatttgcacaagaaaaaaaccaggcagcatgtattgaggaaaaatgaatgatgcacacacagccttaaatctgaagaatcccttccattttgccccatacctgtcattatgagcataatcaggctattgtacactgattttagttaggggcttctcttgactgatagttccttgcaattaattgtttttttccttacagatcagctaatataggagtattcatatgcctcaagtgttccggtgttcacagaagtcttggcacacacatttcaaaggtttcttcaattgcaatatagatagtgctataaatcttttttcatctttcttatccaattgaattcagcaagtttttctgtatttacagcataggcaaagtttgcactgacaattatggcatattatacatcatgttttgagcataatcaccattcagtatttgttttgagcaggttctgtcagtcacactagatcagtggagtgacaatgaaattgataacgtgatcgaagtcggtggaaattctcacgccaatgctatatatgaaaccttcctgccgcagaaccacagcaagccacatccagattctacccaggaagagcgagaaaaattcatcaggtattttattcctctgttagttcgcagcactttcaagtgcagggtatgccattctctcatctgaattcccagatacaggtcaatactttggagcttcccttttgttctgcaaattgaactgaagaaatagcttaaaaaaatgttctcctatggtgtttcagttatatcaaatgacacatacagttaattacaattcttcaggtcaaaatatgagttacaagagtttcttgagccaagcctacggattgtttctcatcagtctagcgactccgggaaacatgcaggcagtgcctcccattctgtcagttccaagagcgaagtaggcagcactgtcctaaaactgcaaattgcattttgttctaccttacttagcatgttctgcgactcttagattcaaatttagtaatccccgatttgatttgcaggtaggcatgattgagttcatcggaatattgaatgtcaaggtgaaaggaggcaccaacctagccatcagagacatgtcaagcagtgatccttatgtagtcctgacccttgggcaacaggtagtattatgaaatcctaattttctgatggtttctgggcaactaattcaagatcgaattcatcgttttgtaccacattgtctctcattcagaacatgcagaaattcttgttctaaatttcaccatatcttcgctgtgtgcagaaagcgcaaacctcggtgatcaaagccaacctgaaccctgtctggaacgaagaactcaagctctctgttcctcagcaatacggccctctcaaactggtaaatcccctcacagaatcacaaccaaaccttcgaaaatcttctaatctgtttcttccatctgatagtcaaaatagctaattgttcaccactgaaattttccggtgtgttcttccatctgacaattaattttctggtttgttcatacatctgataattagtttttctgattagtgttcatccatctgataattgtgacaattagtttctctgatccgagtgttcatccatctgataattgtgatctttgcttttcttggatgcagcaagtgttcgaccacgacatgctgtccaaggacgacctgatgggggaggccgagatcgacctgcagccgatgatcaacgcggcggcggcgttcggcgacccggggctgctcggcgaccggcagatcggccggtggctcaagtccggcgacaacgcgctcgtcagggacagcgccgtcgtggtcgccggcggcgaggtgaggcaggagctggccctcaagctgcagttcaccgagtccggcgaggtggagctggagatgcagtggtttccactcaacatgtagaacaaatcacgctgtcacttcggatttcaagctggagaattttagaaaaagaaaagatgggttttgataatgaagttcattgcatgaactgtttcagcaagtttttgcgttgtttacatggcaaattttgctgcgttcagaaattttaaatttttggtttggcacgagccattgccctgttaacttggttcatttgtgattccaataaaaaggattcttttgtgctctgggttaaattc</dnaseqindica>|
 
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001052741.2 RefSeq:Os02g0198300]|
 
}}
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Oryza Sativa Japonica Group]]
 
[[Category:Japonica Genes]]
 
[[Category:Japonica Chromosome 2]]
 
[[Category:Chromosome 2]]
 

Latest revision as of 08:30, 6 March 2017

The rice Os02g0198300 was reported as OsAGAP, in 206 [1] by researchers from China.

Annotated Information

Function

  • Development and organogenesis in both dicot and monocot plants are highly dependent on polar auxin transport (PAT), which requires the proper asymmetric localization of both auxin influx and efflux carriers.
  • The rice OsAGAP is an ARF-GTPase-activating protein (ARF-GAP) in rice, impaired PAT and interfered with both primary and lateral root development.
  • OsAGAP has a specific role in regulating vesicle trafficking pathways such as the auxin influx pathway, which in turn controls auxin-dependent root growth in plants.

Phenotypic analysis

  • The lateral root phenotype could be rescued by the membrane-permeable auxin 1-naphthyl acetic acid, but not by indole 3-acetic acid (IAA) or by 2,4-dichloro-phenoxyacetic acid, which require influx facilitators to enter the cells.
  • OsAGAP-over-expressing plants had alterations in vesicle trafficking and localization of the presumptive A. thaliana auxin-influx carrier AUX1, but not in the localization of the auxin efflux facilitators.


You can also add sub-section(s) at will.

Labs working on this gene

  • Key Laboratory of Photosynthesis and Molecular Environmental Physiology, Institute of Botany, Chinese Academy of Sciences,

Beijing 100093, China,

  • Graduate School of the Chinese Academy of Sciences, Beijing 100093, China,
  • Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of

Sciences, Beijing 100086, China, and

  • National Plant Gene Research Center, Beijing 100093, China

References

  1. Zhuang X, Jiang J, Li J, Ma Q, Xu Y, Xue Y, Xu Z, Chong K. Over-expression of OsAGAP, an ARF-GAP, interferes with auxin influx, vesicle trafficking and root development. Plant J. 2006 Nov;48(4):581-91. PubMed PMID: 17059407.

Structured Information