Difference between revisions of "Os02g0198300"

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(Created page with "{{JaponicaGene| GeneName = Os02g0198300| Description = Arf GTPase activating protein family protein| Version = NM_001052741.2 GI:297598777 GeneID:4328629| Length = 3339 bp...")
 
 
(2 intermediate revisions by 2 users not shown)
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{{JaponicaGene|
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The rice '''''Os02g0198300''''' was reported as '''''OsAGAP,''''' in 206 <ref name="ref1" /> by researchers from China.  
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GeneName = Os02g0198300|
 
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Description = Arf GTPase activating protein family protein|
 
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Version = NM_001052741.2 GI:297598777 GeneID:4328629|
 
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Length = 3339 bp|
 
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Definition = Oryza sativa Japonica Group Os02g0198300, complete gene.|
 
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Source = Oryza sativa Japonica Group
 
  
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  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
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            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Function===
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            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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* Development and organogenesis in both dicot and monocot plants are highly dependent on polar auxin transport (PAT), which requires the proper asymmetric localization of both auxin influx and efflux carriers.
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            clade; Ehrhartoideae; Oryzeae; Oryza.
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* The rice '''''OsAGAP''''' is an ARF-GTPase-activating protein (ARF-GAP) in rice, impaired PAT and interfered with both primary and lateral root development.
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|
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* '''''OsAGAP''''' has a specific role in regulating vesicle trafficking pathways such as the auxin influx pathway, which in turn controls auxin-dependent root growth in plants.
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Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
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AP = Chromosome 2:5505087..5508425|
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===Phenotypic analysis===
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CDS = 5505630..5505654,5505965..5506049,5506444..5506519,5506694..5506857,5507059..5507176<br>,5507283..5507399,5507543..5507638,5507905..5508186|
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* The lateral root phenotype could be rescued by the membrane-permeable auxin 1-naphthyl acetic acid, but not by indole 3-acetic acid (IAA) or by 2,4-dichloro-phenoxyacetic acid, which require influx facilitators to enter the cells.
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GCID = <gbrowseImage1>
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* OsAGAP-over-expressing plants had alterations in vesicle trafficking and localization of the presumptive A. thaliana auxin-influx carrier AUX1, but not in the localization of the auxin efflux facilitators.
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name=NC_008395:5505087..5508425
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source=RiceChromosome02
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preset=GeneLocation
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You can also add sub-section(s) at will.
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</gbrowseImage1>|
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GSID = <gbrowseImage2>
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==Labs working on this gene==
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name=NC_008395:5505087..5508425
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* Key Laboratory of Photosynthesis and Molecular Environmental Physiology, Institute of Botany, Chinese Academy of Sciences,
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source=RiceChromosome02
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Beijing 100093, China,
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preset=GeneLocation
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* Graduate School of the Chinese Academy of Sciences, Beijing 100093, China,
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</gbrowseImage2>|
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* Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of
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CDNA = <cdnaseq>atgagtggaagacgtgatgattcagctaagatggcaaaactgaaggagctattgcacagaagtgaaaaccgtatctgtgctgactgcagcgcgcctgaccccaaatgggcatcagctaatataggagtattcatatgcctcaagtgttccggtgttcacagaagtcttggcacacacatttcaaaggttctgtcagtcacactagatcagtggagtgacaatgaaattgataacgtgatcgaagtcggtggaaattctcacgccaatgctatatatgaaaccttcctgccgcagaaccacagcaagccacatccagattctacccaggaagagcgagaaaaattcatcaggtcaaaatatgagttacaagagtttcttgagccaagcctacggattgtttctcatcagtctagcgactccgggaaacatgcaggcagtgcctcccattctgtcagttccaagagcgaagtaggcatgattgagttcatcggaatattgaatgtcaaggtgaaaggaggcaccaacctagccatcagagacatgtcaagcagtgatccttatgtagtcctgacccttgggcaacagaaagcgcaaacctcggtgatcaaagccaacctgaaccctgtctggaacgaagaactcaagctctctgttcctcagcaatacggccctctcaaactgcaagtgttcgaccacgacatgctgtccaaggacgacctgatgggggaggccgagatcgacctgcagccgatgatcaacgcggcggcggcgttcggcgacccggggctgctcggcgaccggcagatcggccggtggctcaagtccggcgacaacgcgctcgtcagggacagcgccgtcgtggtcgccggcggcgaggtgaggcaggagctggccctcaagctgcagttcaccgagtccggcgaggtggagctggagatgcagtggtttccactcaacatgtag</cdnaseq>|
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Sciences, Beijing 100086, China, and
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AA = <aaseq>MSGRRDDSAKMAKLKELLHRSENRICADCSAPDPKWASANIGVF                    ICLKCSGVHRSLGTHISKVLSVTLDQWSDNEIDNVIEVGGNSHANAIYETFLPQNHSK                    PHPDSTQEEREKFIRSKYELQEFLEPSLRIVSHQSSDSGKHAGSASHSVSSKSEVGMI                    EFIGILNVKVKGGTNLAIRDMSSSDPYVVLTLGQQKAQTSVIKANLNPVWNEELKLSV                    PQQYGPLKLQVFDHDMLSKDDLMGEAEIDLQPMINAAAAFGDPGLLGDRQIGRWLKSG                    DNALVRDSAVVVAGGEVRQELALKLQFTESGEVELEMQWFPLNM</aaseq>|
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* National Plant Gene Research Center, Beijing 100093, China
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DNA = <dnaseqindica>544..568#879..963#1358..1433#1608..1771#1973..2090#2197..2313#2457..2552#2819..3100#accgaccaatccccatggagctgctgctgtaatccacacgacagagtcagagatctggggactaagtcccaagaacatccctccctcccctcccagccaggagaaatccaaggtaatccagaatctcccttgagcattcctgcaaatcctgggttttttttttcaattcttggtttcttgatgtctctcaagtataggcgatatcctgaattcctttcatcatggttaggctgttcttagcgctttgctgaattgcatttcttcgaattcatttcatcgcgctgcaccgattgctgttcttctatggatttgacactgaaaaagggggacagcgtgattcactcgagttgagatttctcaggtgtcaaaaggcaaaacgacattgatgcatgagtgttcttggatgcttctttacatatgtagcaggaaactataggatgaggaaaaggaactccttgaagttcagtatttctgtttggttgatgcatatttgcaggactgaaaacattggaaagtgtaactaagcagtaagaagatctgaatatgagtggaagacgtgatgattcaggtacttttaccatcaggcactgagcattcactttctttatcactgcattgaattgcataatatgctcctgctgccctcaaaagagcaaattggagaatcagtcatattgcacagtgaagtgaataatgtgtggtgatcatgcacaaattggtgaccaaaaacaaaattctgcaacttcttggagtacttcagatttggtcattttcaatgggtgtgcatttactagtttgctctttagtgctgacagataagattttgccggtggagaaggtcttgcatgatgaattcatatttcatttttctcatgcagctaagatggcaaaactgaaggagctattgcacagaagtgaaaaccgtatctgtgctgactgcagcgcgcctgaccccaaatgggcgtaagtattttcaacctgattcaaactatctgcagagcatctgattcccagtggctgtaagactttgtagaacctgattgttcaatttgaatcagttggtggtttaagtgatcactagtaattagtttgttttcatatccttgctgtgtttttgtttgtatcctcttctcttctatttattttctctggcaatggtatttgcacaagaaaaaaaccaggcagcatgtattgaggaaaaatgaatgatgcacacacagccttaaatctgaagaatcccttccattttgccccatacctgtcattatgagcataatcaggctattgtacactgattttagttaggggcttctcttgactgatagttccttgcaattaattgtttttttccttacagatcagctaatataggagtattcatatgcctcaagtgttccggtgttcacagaagtcttggcacacacatttcaaaggtttcttcaattgcaatatagatagtgctataaatcttttttcatctttcttatccaattgaattcagcaagtttttctgtatttacagcataggcaaagtttgcactgacaattatggcatattatacatcatgttttgagcataatcaccattcagtatttgttttgagcaggttctgtcagtcacactagatcagtggagtgacaatgaaattgataacgtgatcgaagtcggtggaaattctcacgccaatgctatatatgaaaccttcctgccgcagaaccacagcaagccacatccagattctacccaggaagagcgagaaaaattcatcaggtattttattcctctgttagttcgcagcactttcaagtgcagggtatgccattctctcatctgaattcccagatacaggtcaatactttggagcttcccttttgttctgcaaattgaactgaagaaatagcttaaaaaaatgttctcctatggtgtttcagttatatcaaatgacacatacagttaattacaattcttcaggtcaaaatatgagttacaagagtttcttgagccaagcctacggattgtttctcatcagtctagcgactccgggaaacatgcaggcagtgcctcccattctgtcagttccaagagcgaagtaggcagcactgtcctaaaactgcaaattgcattttgttctaccttacttagcatgttctgcgactcttagattcaaatttagtaatccccgatttgatttgcaggtaggcatgattgagttcatcggaatattgaatgtcaaggtgaaaggaggcaccaacctagccatcagagacatgtcaagcagtgatccttatgtagtcctgacccttgggcaacaggtagtattatgaaatcctaattttctgatggtttctgggcaactaattcaagatcgaattcatcgttttgtaccacattgtctctcattcagaacatgcagaaattcttgttctaaatttcaccatatcttcgctgtgtgcagaaagcgcaaacctcggtgatcaaagccaacctgaaccctgtctggaacgaagaactcaagctctctgttcctcagcaatacggccctctcaaactggtaaatcccctcacagaatcacaaccaaaccttcgaaaatcttctaatctgtttcttccatctgatagtcaaaatagctaattgttcaccactgaaattttccggtgtgttcttccatctgacaattaattttctggtttgttcatacatctgataattagtttttctgattagtgttcatccatctgataattgtgacaattagtttctctgatccgagtgttcatccatctgataattgtgatctttgcttttcttggatgcagcaagtgttcgaccacgacatgctgtccaaggacgacctgatgggggaggccgagatcgacctgcagccgatgatcaacgcggcggcggcgttcggcgacccggggctgctcggcgaccggcagatcggccggtggctcaagtccggcgacaacgcgctcgtcagggacagcgccgtcgtggtcgccggcggcgaggtgaggcaggagctggccctcaagctgcagttcaccgagtccggcgaggtggagctggagatgcagtggtttccactcaacatgtagaacaaatcacgctgtcacttcggatttcaagctggagaattttagaaaaagaaaagatgggttttgataatgaagttcattgcatgaactgtttcagcaagtttttgcgttgtttacatggcaaattttgctgcgttcagaaattttaaatttttggtttggcacgagccattgccctgttaacttggttcatttgtgattccaataaaaaggattcttttgtgctctgggttaaattc</dnaseqindica>|
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==References==
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Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001052741.2 RefSeq:Os02g0198300]|
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<references>
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}}
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* <ref name="ref1">
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[[Category:Genes]]
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Zhuang X, Jiang J, Li J, Ma Q, Xu Y, Xue Y, Xu Z, Chong K. Over-expression of
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[[Category:Japonica mRNA]]
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OsAGAP, an ARF-GAP, interferes with auxin influx, vesicle trafficking and root
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[[Category:Oryza Sativa Japonica Group]]
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development. Plant J. 2006 Nov;48(4):581-91. PubMed PMID: 17059407.
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[[Category:Japonica Genes]]
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[[Category:Japonica Chromosome 2]]
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</ref>
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[[Category:Chromosome 2]]
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</references>
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==Structured Information==
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]

Latest revision as of 08:30, 6 March 2017

The rice Os02g0198300 was reported as OsAGAP, in 206 [1] by researchers from China.

Annotated Information

Function

  • Development and organogenesis in both dicot and monocot plants are highly dependent on polar auxin transport (PAT), which requires the proper asymmetric localization of both auxin influx and efflux carriers.
  • The rice OsAGAP is an ARF-GTPase-activating protein (ARF-GAP) in rice, impaired PAT and interfered with both primary and lateral root development.
  • OsAGAP has a specific role in regulating vesicle trafficking pathways such as the auxin influx pathway, which in turn controls auxin-dependent root growth in plants.

Phenotypic analysis

  • The lateral root phenotype could be rescued by the membrane-permeable auxin 1-naphthyl acetic acid, but not by indole 3-acetic acid (IAA) or by 2,4-dichloro-phenoxyacetic acid, which require influx facilitators to enter the cells.
  • OsAGAP-over-expressing plants had alterations in vesicle trafficking and localization of the presumptive A. thaliana auxin-influx carrier AUX1, but not in the localization of the auxin efflux facilitators.


You can also add sub-section(s) at will.

Labs working on this gene

  • Key Laboratory of Photosynthesis and Molecular Environmental Physiology, Institute of Botany, Chinese Academy of Sciences,

Beijing 100093, China,

  • Graduate School of the Chinese Academy of Sciences, Beijing 100093, China,
  • Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of

Sciences, Beijing 100086, China, and

  • National Plant Gene Research Center, Beijing 100093, China

References

  1. ↑ Zhuang X, Jiang J, Li J, Ma Q, Xu Y, Xue Y, Xu Z, Chong K. Over-expression of OsAGAP, an ARF-GAP, interferes with auxin influx, vesicle trafficking and root development. Plant J. 2006 Nov;48(4):581-91. PubMed PMID: 17059407.

Structured Information