|
|
| (6 intermediate revisions by 2 users not shown) |
| Line 1: |
Line 1: |
| − | {{JaponicaGene|
| + | The rice gene Os12g0570000 was reported as '''''SPL11''''' in 2008<ref name="ref1" /> by researchers from Columbus, Philippines and China. |
| − | GeneName = Os12g0570000|
| |
| − | Description = Similar to Spotted leaf protein 11 (Spotted leaf11) (Cell death-related protein SPL11)|
| |
| − | Version = NM_001073609.2 GI:297613389 GeneID:4352575|
| |
| − | Length = 4942 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os12g0570000, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os12g0570000 <=> SPL11,OsSPL11 |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | |
| − | |
| + | ===Function=== |
| − | Chromosome = [[:category:Japonica Chromosome 12|Chromosome 12]]|
| + | * The rice (Oryza sativa) E3 ligase '''''SPOTTED LEAF11 (SPL11)''''' negatively regulates programmed cell death and disease resistance. |
| − | AP = Chromosome 12:23671988..23676929|
| + | * SPL11 also regulates flowering via interaction with SPIN1 (for SPL11-interacting protein1), a Signal Transduction and Activation of RNA family member. SPIN1 binds RNA and DNA in vitro and interacts with SPL11 in the nucleus. |
| − | CDS = 23672341..23673537,23673633..23674067,23674162..23674278,23676764..23676928|
| + | ===Mutation=== |
| − | GCID = <gbrowseImage1>
| + | * '''''Spl11''''' mutants have delayed flowering under long-day conditions. |
| − | name=NC_008405:23671988..23676929
| + | ===Expression === |
| − | source=RiceChromosome12
| + | |
| − | preset=GeneLocation
| + | ===Evolution=== |
| − | </gbrowseImage1>|
| + | |
| − | GSID = <gbrowseImage2>
| + | You can also add sub-section(s) at will. |
| − | name=NC_008405:23671988..23676929
| + | ==Labs working on this gene== |
| − | source=RiceChromosome12
| + | * Department of Plant Pathology, Plant Molecular Biology and Biotechnology Program, Ohio State University, Columbus, Ohio 43210 |
| − | preset=GeneLocation
| + | * International Rice Research Institute, Manila, Philippines |
| − | </gbrowseImage2>| | + | * Crop Gene Engineering Key Laboratory of Hunan Province, Hunan Agricultural University, Changsha, Hunan 410128, China |
| − | CDNA = <cdnaseq>cggcggattcggctgctggggcccttcgtggaggagctccgggagcggaggcggggggagggggagggggaggaggaggagcgggcgctggcgccgctcgccgacgcgctcgaggcggcgctcgcgctgctccggctcggccgcgaggggagcaggatctccttggttcttgagagggacagcgtaatgaaaaagtttcagggagtaattttgcagctggaacaagctctgtgcgacattccgtacaatgaattggatatatcagatgaagttagagagcaggttgagttagtgcacgcacagctcaaaagagcaaaagaacggattgatatgcctgacgatgaattctacaatgatctactatctgtatatgacaagaactatgacccaagtgcagaactggctattcttggaagattgtcagaaaagctacacttgatgacaatcaccgatctcacgcaagaatcactcgccttacatgagatggtcgcatccggcggtggtcaggacccaggagaacacattgagagaatgtcaatgctactgaagaagattaaggattttgtgcaaacacagaaccctgacatggggcctcctatggcttccagggtattggattcaaatggggattcaaggcctataaccattcctgacgagttccgatgtccaatttctcttgagctgatgaaggatcctgttatagtgtctacagggcagacatatgagcgggcatgcattgagaaatggatagcatcaggccatcatacctgcccaaccacgcaacagaagatgtcaacctcagcattgacgccaaactatgtccttagaagtctcatttcccagtggtgtgaaaccaatgggatggagccaccaaagcgctcaacccagcctaacaagcctacgcctgcatgctcttcgagtgaacgtgctaacatcgatgctctgctatctaagttatgctctccagacactgaggagcagagatcagctgctgcagagcttcgcctccttgcaaagcggaatgcaaacaaccggatttgcattgctgaggcaggtgccattcccttgctattgagtctgctgtcctcatctgacctacggactcaagaacatgcagttactgcccttctgaacctctccatacatgaggacaataaggcaagcatcatatcatctggtgctgtcccaagcatagtccatgttctgaagaatggcagcatggaggcacgggagaatgctgcggccacactttttagtctctcagtgattgatgaatataaagtgacaattggagggatgggggctatccctgcgcttgtagtgctgttaggcgagggtagccagcgggggaagaaggatgcagcagcagctctcttcaacttgtgtatataccaagggaacaagggacgagcgattcgagctggccttgtgccactcatcatggggctggtgaccaaccccacaggagcgctcatggatgaggctatggcaatactctccatactatccagccaccctgagggcaaggcagcgattggggcggcagagcctgtccctgtgcttgtggagatgatcggaagcggaaccccgagaaatcgagagaatgctgcggctgtcatgctacatctgtgcagtggagagcaccatcttgtgcatttagctcgtgcgcaggagtgcgggatcatggtcccgttgcgggagctggctttgaacggcaccgatagggggaagaggaaggctgtgcagctgctcgagcggatgagcagattcctagtccagcaacaagaggaacaggagtcccagtcgcaagcctccgcgcaggtccctcctcaggccacccctgagcaggtcccggaaaatgacatccctgaacaattggacagcccagcgtctcaataccctatggttgtatga</cdnaseq>|
| + | |
| − | AA = <aaseq>RRIRLLGPFVEELRERRRGEGEGEEEERALAPLADALEAALALL RLGREGSRISLVLERDSVMKKFQGVILQLEQALCDIPYNELDISDEVREQVELVHAQL KRAKERIDMPDDEFYNDLLSVYDKNYDPSAELAILGRLSEKLHLMTITDLTQESLALH EMVASGGGQDPGEHIERMSMLLKKIKDFVQTQNPDMGPPMASRVLDSNGDSRPITIPD EFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPNYVLR SLISQWCETNGMEPPKRSTQPNKPTPACSSSERANIDALLSKLCSPDTEEQRSAAAEL RLLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEHAVTALLNLSIHEDNKASIISS GAVPSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTIGGMGAIPALVVLLGEGSQRG KKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGALMDEAMAILSILSSHPEG KAAIGAAEPVPVLVEMIGSGTPRNRENAAAVMLHLCSGEHHLVHLARAQECGIMVPLR ELALNGTDRGKRKAVQLLERMSRFLVQQQEEQESQSQASAQVPPQATPEQVPENDIPE QLDSPASQYPMVV</aaseq>|
| + | ==References== |
| − | DNA = <dnaseqindica>3393..4589#2863..3297#2652..2768#2..166#gcggcggattcggctgctggggcccttcgtggaggagctccgggagcggaggcggggggagggggagggggaggaggaggagcgggcgctggcgccgctcgccgacgcgctcgaggcggcgctcgcgctgctccggctcggccgcgaggggagcaggatctccttggtatgtgcgcgcgtgtgggtttcttgattttgttcgattcgtggtcctggctgcctttttgggaggaactattattattattatggattggtgatttgatattatgacctgttcttaggtaaaaataaagtgcagctttagttattaagtttattattgactttagtctcctaaaaaaaattaagattcttggatgcaaaaatatgattctgattcgtctactgtgtatccgtgcttaatttttgcttttataaatcgtgtggactaatattaatatatattgatgtgcagttgtttgaaacacaaaacaaattgtaggggtcgtgattgttaagtgagttttcttttgttttagcataggggctttaggatgatttagttgctgttgcttattaatcgcaaaaaagagagagagaaaggtttccataattttattctgcagctgtgttgtatttgttcagctagatttcttgttgagctgagattgcttcttgttcaatgcgaccaatatatgttcttcttttgtggtgcaattttggtagggtccataagttgtggtctttgggggcgtctgtaacttggttatttcagatcaaactccttgctatttttttttgtggatctactgcgaaacttgtcatctgtaaatgatccatgcattctcatttctcagggcatccatgagtttgtcatagatttgctgtagaataaatgcttggacggattcctccatcggtttctttacttgttgaaacattcaagaatctacttgcccttgccctacatccttcatggttgtactccacatgttattccccatggtaaaagcacggtttgttgtgtggattagttgggagaggcaacggatagacatatgatcatgtctttctccatggtaaaagcaagatttgttgtggattagttgggacaaccatatgatcatgtctttcactttcttgtgtgttgtttgtagtggatattgtctatagctttgaattgttcttttgaggagaggtatgatcttccagtcctgagcaattcaactgctccttttggatcataaatttcacctcttgaatcattatctagccagtttttctgcctaccagtatggtacatcaaatctgaccgattggagtactatgttcttttgtcaagtataactgtattattatctgtatggtatatctaatcataacagacattttcatttttctattttcactgggacaaagaacttgtactaattgtttgctttactttggtcaaatctggttgactgtatctgttgtaactatcaaggcctcaaacccttcatcgagtccgtgttatcaatgggatgctttatgagtgctatgacataatattggtaatcaatagtctttgaacattattttatatcttgatcgctcatacaacaatgatgactatcttgatcgctcatgcactatttttccggattaagaactaacttctggctgggtagttgttgaaattgttcaggagttgaataggccacgtgctttgtcagaaaattaaatagcagcaagtaaaaggttttctggaagctttcatgttaaattctttttataaactagcaaatgaaatggtctgaagaagcatattttcattttggaagtgcaatattgcttagtagagagtaatcaaattgggttctatacctaccacttaatgctcgctgagtacattgacccaaaaatattatttctgagcacaataggtttcattaaacttttatactgaaatacaataagttgccgcaaccagagcagatcaacaaaatttgtcattagagaacttcagatgatcgacatcataactatattgtttgtaggctcaaacattaaggtccccaccagtggatttctgcacccgttgaaagtgtttttcttttttggcctgttggaatgcccatgtacctgatgataggactacctctatgactcaccgactatatcttttacggctgtgcatagggaagggatgaacctacaagttagaaatatggtagtcattgtctagttttctttatgtgactatcaaactcatgtattgattcaacgttttccttcttcaactccattttgatgttattgaaagtgcttgctcattttattcccaagctcagaagcaagggattttcttgattatattggtgtagtttaaatttcaggttggttttcttgctctttgcttcagtacttgaaccacaggcctctgactgtccatcctgtagcttgtaatgtttttatatggtgctcttaatgttggtgttactctatctcttttttcccctgctttacctgtattcttattgacctttgattaccattttgttcttattataaatcattttttataaacatgcttttcgaaacactaattgctgtggatttgtttctgtacaaccacttgtttagctaaggagccttttctttctttcttttcccattctggtttgcaggttcttgagagggacagcgtaatgaaaaagtttcagggagtaattttgcagctggaacaagctctgtgcgacattccgtacaatgaattggatatatcagatgaagttagagagcaggtaacgatgacagcacactgaaaagaattcctcttgctattatcattaagcacttaaatccagcattggagataattatccaaatcctgtccaggttgagttagtgcacgcacagctcaaaagagcaaaagaacggattgatatgcctgacgatgaattctacaatgatctactatctgtatatgacaagaactatgacccaagtgcagaactggctattcttggaagattgtcagaaaagctacacttgatgacaatcaccgatctcacgcaagaatcactcgccttacatgagatggtcgcatccggcggtggtcaggacccaggagaacacattgagagaatgtcaatgctactgaagaagattaaggattttgtgcaaacacagaaccctgacatggggcctcctatggcttccagggtattggattcaaatggggattcaaggcctataaccattcctgacgagttccgatgtccaatttctcttgagctgatgaaggatcctgttatagtgtctacagggcaggtagcaatctctacctctttatttttaagacccaaagcacaatgcaactaaaatagttattttagtataaacattttttatttgttaatttgtagacatatgagcgggcatgcattgagaaatggatagcatcaggccatcatacctgcccaaccacgcaacagaagatgtcaacctcagcattgacgccaaactatgtccttagaagtctcatttcccagtggtgtgaaaccaatgggatggagccaccaaagcgctcaacccagcctaacaagcctacgcctgcatgctcttcgagtgaacgtgctaacatcgatgctctgctatctaagttatgctctccagacactgaggagcagagatcagctgctgcagagcttcgcctccttgcaaagcggaatgcaaacaaccggatttgcattgctgaggcaggtgccattcccttgctattgagtctgctgtcctcatctgacctacggactcaagaacatgcagttactgcccttctgaacctctccatacatgaggacaataaggcaagcatcatatcatctggtgctgtcccaagcatagtccatgttctgaagaatggcagcatggaggcacgggagaatgctgcggccacactttttagtctctcagtgattgatgaatataaagtgacaattggagggatgggggctatccctgcgcttgtagtgctgttaggcgagggtagccagcgggggaagaaggatgcagcagcagctctcttcaacttgtgtatataccaagggaacaagggacgagcgattcgagctggccttgtgccactcatcatggggctggtgaccaaccccacaggagcgctcatggatgaggctatggcaatactctccatactatccagccaccctgagggcaaggcagcgattggggcggcagagcctgtccctgtgcttgtggagatgatcggaagcggaaccccgagaaatcgagagaatgctgcggctgtcatgctacatctgtgcagtggagagcaccatcttgtgcatttagctcgtgcgcaggagtgcgggatcatggtcccgttgcgggagctggctttgaacggcaccgatagggggaagaggaaggctgtgcagctgctcgagcggatgagcagattcctagtccagcaacaagaggaacaggagtcccagtcgcaagcctccgcgcaggtccctcctcaggccacccctgagcaggtcccggaaaatgacatccctgaacaattggacagcccagcgtctcaataccctatggttgtatgaactcgatgatgagcgagtcatcgtcgcaatcctatcaaatgtcggattgagtagcatcctggtcactttgcattctgctcatgattcatggcatgccgaccaattgaggtttttccacaagcttgaactataaggtttccatgcttgtgtgctgaaactcccaggttgtgagaatttgtttaggcagcccaggatgttgagatagatgtgtacagtttcttaaacatgcagctgctatatgtagacaacataatgcaaggttttcccatgtatatcctgaagactgtaataccatatgtaaaagagaagtttcaaatgcggatttgagcagtaaatctgatggctttactact</dnaseqindica>|
| + | <references> |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001073609.2 RefSeq:Os12g0570000]|
| + | * <ref name="ref1"> |
| − | }}
| + | Vega-Sánchez ME, Zeng L, Chen S, Leung H, Wang GL. SPIN1, a K homology domain |
| − | [[Category:Genes]] | + | protein negatively regulated and ubiquitinated by the E3 ubiquitin ligase SPL11, |
| − | [[Category:Japonica mRNA]]
| + | is involved in flowering time control in rice. Plant Cell. 2008 |
| − | [[Category:Oryza Sativa Japonica Group]] | + | Jun;20(6):1456-69. doi: 10.1105/tpc.108.058610. PubMed PMID: 18586868; PubMed |
| − | [[Category:Japonica Genes]]
| + | Central PMCID: PMC2483366. |
| − | [[Category:Japonica Chromosome 12]] | + | |
| − | [[Category:Chromosome 12]]
| + | </ref> |
| | + | </references> |
| | + | |
| | + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 12]] |
