Difference between revisions of "Os04g0572400"

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Please input one-sentence summary here.
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The rice '''''Os04g0572400''''' was reported as '''''OsDREB1E''''' in 2008 <ref name="ref1" /> by researchers from China.  
  
 
==Annotated Information==
 
==Annotated Information==
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===Gene Symbol===
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*'''''Os04g0572400''''' '''''<=>''''' '''''OsDREB1E, OsERF030, OsERF30, ERF30, AP2/EREBP160, OsDREB1-1'''''
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===Function===
 
===Function===
  Most dehydration-responsive element-binding (DREB) factors interact specifically with the dehydration-responsive element (DRE) and control the expression of many stress-inducible genes in Arabidopsis. OsDREB are homologous to Arabidopsis DREB genes. Over-expression of OsDREB genes lead to enhanced drought tolerance in rice. Transgenic rice plants analysis revealed that over-expression of OsDREB1G and OsDREB2B in rice significantly improved their tolerance to water deficit stress, while over-expression of OsDREB1E could only slightly improved the tolerance to water deficit stress, suggesting that the OsDREBs might participate in the stress response pathway in different manners (Chen et al. 2008).
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* The DREB transcription factors, which specifically interact with C-repeat/DRE (A/GCCGAC), play an important role in plant abiotic stress tolerance by controlling the expression of many cold or/and drought-inducible genes in an ABA-independent pathway.
  OsDREB4 Genes in Rice Encode AP2-Containing Proteins that Bind Specifically to the Dehydration-Responsive Element. OsDREB4-1 and OsDREB4-2 proteins specifically bound to DRE and activated expression of the dual reporter genes of histidine (HIS3) and galactosidase (LacZ). OsDREB4-1 could function as a trans -acting factor in the DRE/DREB regulated stress-responsive pathway. The expression of the OsDREB genes could be controlled by specific aspects of differentiation or development (Tian et al. 2005).
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* The yeast one-hybrid assay indicated that '''''OsDREB1E, OsDREB1G, and OsDREB2B''''' can specifically bind to the C-repeat/DRE element.
 
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* OsDREBs might participate in the stress response pathway in different manners.
===Expression===
 
Please input expression information here.
 
 
 
===Evolution===
 
Please input evolution information here.
 
  
You can also add sub-section(s) at will.
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===Phenotypic analysis===
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* Over-expression of '''''OsDREB1G''''' and '''''OsDREB2B''''' in rice significantly improved their tolerance to water deficit stress, while over expression of '''''OsDREB1E''''' could only slightly improved the tolerance to water deficit stress.
  
 
==Labs working on this gene==
 
==Labs working on this gene==
Please input related labs here.
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* College of Life Sciences, Beijing Normal University, Beijing 100875, People’s Republic of China
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* School of Life Sciences, Fudan University, Shanghai 200433, People’s Republic of China
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* National Center for Molecular Crop Design, Weiming Kaituo Agriculture Biotech Co., Ltd, Beijing 100085, People’s Republic of China
  
 
==References==
 
==References==
Please input cited references here.
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<references>
1. Donghai Mao;Caiyan Chen Colinearity and Similar Expression Pattern of Rice DREB1s Reveal Their Functional Conservation in the Cold-  Responsive Pathway PLoS ONE, 2012, 7(10): e47275
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<ref name="ref1">Matsukura S, Mizoi J, Yoshida T, et al. Comprehensive analysis of rice DREB2-type genes that encode transcription factors involved in the expression of abiotic stress-responsive genes[J]. Molecular Genetics and Genomics, 2010, 283(2): 185-196.</ref>
2. Jian-Qiang Chen;Xiu-Ping Meng;Yun Zhang;Mian Xia;Xi-Ping Wang Over-expression of OsDREB genes lead to enhanced drought tolerance in rice
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  Biotechnology Letters, 2008, 30(12): 2191-2198
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</references>
3. Xiu-Hong TIAN;Xue-Ping LI;Hua-Lin ZHOU;Jin-Song ZHANG;Zhi-Zhong GONG;Shou-Yi CHEN OsDREB4 Genes in Rice Encode AP2-Containing Proteins that Bind Specifically to the Dehydration-Responsive Element Journal of Integrative Plant Biology, 2005, 47(4): 467-476
 
  
 
==Structured Information==
 
==Structured Information==
{{JaponicaGene|
 
GeneName = Os04g0572400|
 
Description = Similar to CRT/DRE binding factor 1|
 
Version = NM_001060143.1 GI:115460015 GeneID:4336721|
 
Length = 660 bp|
 
Definition = Oryza sativa Japonica Group Os04g0572400, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
 
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
 
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
 
            clade; Ehrhartoideae; Oryzeae; Oryza.
 
|
 
Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|
 
AP = Chromosome 4:29219354..29220013|
 
CDS = 29219354..29220013|
 
GCID = <gbrowseImage1>
 
name=NC_008397:29219354..29220013
 
source=RiceChromosome04
 
preset=GeneLocation
 
</gbrowseImage1>|
 
GSID = <gbrowseImage2>
 
name=NC_008397:29219354..29220013
 
source=RiceChromosome04
 
preset=GeneLocation
 
</gbrowseImage2>|
 
CDNA = <cdnaseq>atggagtgggcgtactacggcagtgggtactcctcgtcggggacgccgtcgccggtgggcggcgacggggacgaggactcgtacatgacggtgtcgtcggcgccgcccaagcggcgggcggggaggaccaagttcaaggagacgaggcacccggtgtacaagggcgtgcgcagcaggaaccccgggaggtgggtctgcgaggtgcgcgagccgcacggcaagcagaggatctggctcggcaccttcgagaccgccgagatggcggcgcgcgcgcacgacgtcgcggcgatggcgctgcgcggccgcgccgcctgcctcaacttcgccgactcgccgcgcaggctccgcgtgccgccgctgggggccgggcacgaggagatacgccgcgccgcggtcgaggccgccgagctgttccgcccggcgcccgggcagcacaatgcggctgccgaggcggcggccgctgtcgctgcgcaggcaaccgcggcgagcgcggagctctttgccgacttcccttgctacccgatggacggactggaattcgaaatgcaggggtacctcgacatggcacagggaatgctcatcgagccgccgccattggcagggcaatcgacgtgggccgaggaggactacgactgcgaggtcaatctatggagctactga</cdnaseq>|
 
AA = <aaseq>MEWAYYGSGYSSSGTPSPVGGDGDEDSYMTVSSAPPKRRAGRTK                    FKETRHPVYKGVRSRNPGRWVCEVREPHGKQRIWLGTFETAEMAARAHDVAAMALRGR                    AACLNFADSPRRLRVPPLGAGHEEIRRAAVEAAELFRPAPGQHNAAAEAAAAVAAQAT                    AASAELFADFPCYPMDGLEFEMQGYLDMAQGMLIEPPPLAGQSTWAEEDYDCEVNLWS                    Y</aaseq>|
 
DNA = <dnaseqindica>1..660#atggagtgggcgtactacggcagtgggtactcctcgtcggggacgccgtcgccggtgggcggcgacggggacgaggactcgtacatgacggtgtcgtcggcgccgcccaagcggcgggcggggaggaccaagttcaaggagacgaggcacccggtgtacaagggcgtgcgcagcaggaaccccgggaggtgggtctgcgaggtgcgcgagccgcacggcaagcagaggatctggctcggcaccttcgagaccgccgagatggcggcgcgcgcgcacgacgtcgcggcgatggcgctgcgcggccgcgccgcctgcctcaacttcgccgactcgccgcgcaggctccgcgtgccgccgctgggggccgggcacgaggagatacgccgcgccgcggtcgaggccgccgagctgttccgcccggcgcccgggcagcacaatgcggctgccgaggcggcggccgctgtcgctgcgcaggcaaccgcggcgagcgcggagctctttgccgacttcccttgctacccgatggacggactggaattcgaaatgcaggggtacctcgacatggcacagggaatgctcatcgagccgccgccattggcagggcaatcgacgtgggccgaggaggactacgactgcgaggtcaatctatggagctactga</dnaseqindica>|
 
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001060143.1 RefSeq:Os04g0572400]|
 
}}
 
 
[[Category:Genes]]
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Japonica mRNA]]

Latest revision as of 04:33, 8 March 2017

The rice Os04g0572400 was reported as OsDREB1E in 2008 [1] by researchers from China.

Annotated Information

Gene Symbol

  • Os04g0572400 <=> OsDREB1E, OsERF030, OsERF30, ERF30, AP2/EREBP160, OsDREB1-1

Function

  • The DREB transcription factors, which specifically interact with C-repeat/DRE (A/GCCGAC), play an important role in plant abiotic stress tolerance by controlling the expression of many cold or/and drought-inducible genes in an ABA-independent pathway.
  • The yeast one-hybrid assay indicated that OsDREB1E, OsDREB1G, and OsDREB2B can specifically bind to the C-repeat/DRE element.
  • OsDREBs might participate in the stress response pathway in different manners.

Phenotypic analysis

  • Over-expression of OsDREB1G and OsDREB2B in rice significantly improved their tolerance to water deficit stress, while over expression of OsDREB1E could only slightly improved the tolerance to water deficit stress.

Labs working on this gene

  • College of Life Sciences, Beijing Normal University, Beijing 100875, People’s Republic of China
  • School of Life Sciences, Fudan University, Shanghai 200433, People’s Republic of China
  • National Center for Molecular Crop Design, Weiming Kaituo Agriculture Biotech Co., Ltd, Beijing 100085, People’s Republic of China

References

  1. Matsukura S, Mizoi J, Yoshida T, et al. Comprehensive analysis of rice DREB2-type genes that encode transcription factors involved in the expression of abiotic stress-responsive genes[J]. Molecular Genetics and Genomics, 2010, 283(2): 185-196.

Structured Information