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| − | Please input one-sentence summary here.
| + | The rice '''''Os12g0189500''''' was reported as ''''' OsYUC11''''' in 2012 <ref name="ref1" /> by researchers from Australia. |
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| | ==Annotated Information== | | ==Annotated Information== |
| | + | ===Gene Symbol=== |
| | + | *'''''Os04g0459000''''' '''''<=>''''' '''''OsYUCCA11, OsYUC11''''' |
| | + | |
| | ===Function=== | | ===Function=== |
| − | Please input function information here.
| + | * IAA production in developing rice grains is controlled via expression of '''''OsTAR1, OsYUC9,OsYUC11''''' and that IAA may be important during starch deposition in addition to its previously suggested role early in grain development. |
| − | The increase in IAA content was strongly correlated with the expression of putative
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| − | IAA biosynthesis genes, OsYUC9, OsYUC11 and OsTAR1, measured by
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| − | quantitative reverse transcriptase polymerase chain reaction<ref name="pmid:16660061" />. These results
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| − | confirm the importance of the tryptophan aminotransferase/YUCCA pathway
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| − | in this system. All three genes were expressed in endosperm; expression
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| − | of OsYUC11 appeared to be confined to endosperm tissue<ref name="pmid:17889819" />. Phylogenetic
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| − | analysis indicated that OsYUC11 and AtYUC10 belong to a separate clade of
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| − | YUCCAs, which do not have orthologues outside the Angiosperms<ref name="pmid:18410479" />. This clade
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| − | may have evolved with a specific role in endosperm. Expression of tryptophan
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| − | decarboxylase in developing rice grains did not correlate with IAA levels,
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| − | indicating that tryptamine is unlikely to be important for IAA synthesis in this
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| − | system<ref name="pmid:16665995" />. In light of these observations, we hypothesize that IAA production
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| − | in developing rice grains is controlled via expression of OsTAR1, OsYUC9, | |
| − | OsYUC11 and that IAA may be important during starch deposition in addition | |
| − | to its pr eviously suggested role early in grain development. | |
| | | | |
| | ===Expression=== | | ===Expression=== |
| − | Please input expression information here.
| + | * '''''OsYUC11''''' was expressed in endosperm, the expression of '''''OsYUC11''''' appeared to be confined to endosperm tissue |
| | | | |
| | ===Evolution=== | | ===Evolution=== |
| − | Please input evolution information here.
| + | * Phylogenetic analysis indicated that OsYUC11 and AtYUC10 belong to a separate clade of YUCCAs, which do not have orthologues outside the Angiosperms. This clade may have evolved with a specific role in endosperm. |
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| − | You can also add sub-section(s) at will.
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| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | Please input related labs here.
| + | * Molecular and Cellular Biology, University of New England, Armidale, New South Wales, Australia |
| − | | + | * Department of Biochemistry and Molecular Biology, University of Massachusetts, Amherst, MA 01003, USA |
| − | | |
| − | Present address: Department of applied biological science, Al-Ghad International AppliedMedical Science University, Jeddah, Saudi Arabia
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| | | | |
| | ==References== | | ==References== |
| | <references> | | <references> |
| − | <ref name="pmid:16660061">Bandurski RS, Schulze A (1977) Concentration of indole-3-acetic acid and its derivatives in plants. Plant Physiol 60: 211–213.</ref> | + | * <ref name="ref1"> |
| − | <ref name="pmid:17889819"> Barkawi LS, Tam YY, Tillman JA, Pederson B, Calio J,Al-Amier H, Emerick M, Normanly J, Cohen JD (2008) A high-throughput method for the quantitative analysis of indole-3-acetic acid and other auxins from plant tissue. Anal Biochem 372: 177–188 </ref>
| + | bu-Zaitoon YM, Bennett K, Normanly J, Nonhebel HM. A large increase in IAA |
| − | <ref name="pmid:18410479 "> Benedito VA, Torres-Jerez I, Murray JD, Andriankaja A,Allen S, Kakar K, Wandrey M, Verdier J, Zuber H, Ott T,Moreau S, Niebel A, Frickey T, Weiller G, He J, Dai XB,Zhao PX, Tang YH, Udvardi MK (2008) A gene expression atlas of the model legume Medicago truncatula. Plant J 55: 504–513. </ref>
| + | during development of rice grains correlates with the expression of tryptophan |
| − | <ref name="pmid:16665995 ">Chen KH, Miller AN, Patterson GW, Cohen JD (1988) A Rapid and simple procedure for purification of indole-3-acetic-acid prior to GC-SIM-MS analysis. Plant Physiol 86: 822–825 </ref>
| + | aminotransferase OsTAR1 and a grain-specific YUCCA. Physiol Plant. 2012 |
| | + | Dec;146(4):487-99. doi: 10.1111/j.1399-3054.2012.01649.x. PubMed PMID: 22582989. |
| | + | </ref> |
| | + | </references> |
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| − | Please input cited references here.
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| − | {{JaponicaGene|
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| − | GeneName = Os12g0189500|
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| − | Description = Pyridine nucleotide-disulphide oxidoreductase, class I family protein|
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| − | Version = NM_001072867.2 GI:297612801 GeneID:4351695|
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| − | Length = 8650 bp|
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| − | Definition = Oryza sativa Japonica Group Os12g0189500, complete gene.|
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| − | Source = Oryza sativa Japonica Group
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| − |
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| − | ORGANISM Oryza sativa Japonica Group
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| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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| − | clade; Ehrhartoideae; Oryzeae; Oryza.
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| − | |
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| − | Chromosome = [[:category:Japonica Chromosome 12|Chromosome 12]]|
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| − | AP = Chromosome 12:4507750..4516399|
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| − | CDS = 4507750..4507887,4514763..4514909,4515209..4515331,4515422..4515658,4515788..4516399<br>|
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| − | GCID = <gbrowseImage1>
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| − | name=NC_008405:4507750..4516399
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| − | source=RiceChromosome12
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| − | preset=GeneLocation
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| − | </gbrowseImage1>|
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| − | GSID = <gbrowseImage2>
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| − | name=NC_008405:4507750..4516399
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| − | source=RiceChromosome12
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| − | preset=GeneLocation
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| − | </gbrowseImage2>|
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| − | CDNA = <cdnaseq>atggagaaggctctagttctgattgttggagcaggcccatctggtcttgcaacagcggcgtgccttggccagctctctataccctatgttattatcgagcgtgaggattgtaccgcgtcgctgtggcgtaagcacacatatgatcgcctcaagcttcacctcgcaaaggagttctgcgagatgccccacatgccatatccggaagacacaccaacctacatccccaagattcaatttttgaggtatatggatgattatgtggagcatttcaacatttgtcccaaatttaactcatctgttgagtcatgtttgtatgatgatgtgcaaaaatattgggttgtcacaacacatgaccaagtgaatggcatggtgtccaagtatgcagctaggttcttagttgtagcaagtggtgaaaatagtgcagggaacattcctagcatccctggactagaggatttctctggccatgtcatacactcatcaagctttaggtcagcagattcctatgctgcgcaaagggtgcttgttgttggatgtggaaactcaggcatggagattgcctatgatctttcaagccatggagcaaatacctccatagtcatccgcagccctctgcatgtgatgacaaaggagctgattcacatggggatgaaacttgcaagctggagcctcccagtgaaatttgttgattttattcttgtggtccttgcatatctctggtttggcaatctctcaaagtatggcatcgtgaggcccaataaggggccattgcttcttaaggcaaatactggtcggtcagcagtaatagatgttggcactgtggagttaataaagaaaggggatatcaaggtctttggtacaatatcttgcatcaagggaaatgttgttgaatttgatgatgggaaagaaagttactttgatgctattgtttttgctacaggctacacaagtactgcaaacaactggcttaagaatggtgaggatatgatgaacaaagaaggcatgcccaagaaggacttcccaaatcactggaaaggttcaaatggactctactgtgttgggtttgcgaggagaggattatctggtattgctcatgacgccaaaaacgttgctaatgactggatggaagaagacttgacaccaaagcccgccgttggcagttctaagaacagtcagccctcacttatcacatccatggatggtgaacgatgctttgccttagtggcagagcaaactgtttccattggaggcaattga</cdnaseq>|
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| − | AA = <aaseq>MEKALVLIVGAGPSGLATAACLGQLSIPYVIIEREDCTASLWRK HTYDRLKLHLAKEFCEMPHMPYPEDTPTYIPKIQFLRYMDDYVEHFNICPKFNSSVES CLYDDVQKYWVVTTHDQVNGMVSKYAARFLVVASGENSAGNIPSIPGLEDFSGHVIHS SSFRSADSYAAQRVLVVGCGNSGMEIAYDLSSHGANTSIVIRSPLHVMTKELIHMGMK LASWSLPVKFVDFILVVLAYLWFGNLSKYGIVRPNKGPLLLKANTGRSAVIDVGTVEL IKKGDIKVFGTISCIKGNVVEFDDGKESYFDAIVFATGYTSTANNWLKNGEDMMNKEG MPKKDFPNHWKGSNGLYCVGFARRGLSGIAHDAKNVANDWMEEDLTPKPAVGSSKNSQ PSLITSMDGERCFALVAEQTVSIGGN</aaseq>|
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| − | DNA = <dnaseqindica>8513..8650#1491..1637#1069..1191#742..978#1..612#atggagaaggctctagttctgattgttggagcaggcccatctggtcttgcaacagcggcgtgccttggccagctctctataccctatgttattatcgagcgtgaggattgtaccgcgtcgctgtggcgtaagcacacatatgatcgcctcaagcttcacctcgcaaaggagttctgcgagatgccccacatgccatatccggaagacacaccaacctacatccccaagattcaatttttgaggtatatggatgattatgtggagcatttcaacatttgtcccaaatttaactcatctgttgagtcatgtttgtatgatgatgtgcaaaaatattgggttgtcacaacacatgaccaagtgaatggcatggtgtccaagtatgcagctaggttcttagttgtagcaagtggtgaaaatagtgcagggaacattcctagcatccctggactagaggatttctctggccatgtcatacactcatcaagctttaggtcagcagattcctatgctgcgcaaagggtgcttgttgttggatgtggaaactcaggcatggagattgcctatgatctttcaagccatggagcaaatacctccatagtcatccgcagccctgtaagtaaataatacatttgcataaaagtttcctttctttattttgcctccctgttttccaggtcaagttattgtaagtatcctattaaatcattttcttacaccacaaattcttgaattattctaaagctgcatgtgatgacaaaggagctgattcacatggggatgaaacttgcaagctggagcctcccagtgaaatttgttgattttattcttgtggtccttgcatatctctggtttggcaatctctcaaagtatggcatcgtgaggcccaataaggggccattgcttcttaaggcaaatactggtcggtcagcagtaatagatgttggcactgtggagttaataaagaaaggggatatcaaggtaacaaaattcttgacacaacatagaaaagtctatataaattctatttggtacttgacaggttctataaggaatttatgtggcatgtaggtctttggtacaatatcttgcatcaagggaaatgttgttgaatttgatgatgggaaagaaagttactttgatgctattgtttttgctacaggctacacaagtactgcaaacaactggcttaaggtatgtaatatgttgctcatatggtaaatagtaaatacaaaaattattgcaattagatttagttgttattttctctctcctgcatacctcaagtggggcatcaaattaagagtgcctacaatactattagacagatttagaaagaaaagcatttgcgtgattgactcaacaaaattagtgataaaacctgttataaaattatagttataattagaagacaatggtgctatcttcatatttaactttctttctttctgtggaaatatttgttaataaaataattatgattaaaaacgcagaatggtgaggatatgatgaacaaagaaggcatgcccaagaaggacttcccaaatcactggaaaggttcaaatggactctactgtgttgggtttgcgaggagaggattatctggtattgctcatgacgccaaaaacgttgctaatgacgtcaaggccttcctagatttgatggcaccattctaattattatttgcactggaatgatgcctatcaaatagtattgtggtaccttctacaatagtggtgtgtacttaatgttacattatgtttgaagcaagctaaatgttatgcaatctccagagttgtttaaataattatattttcttaatcgacatgttggatgagcttttatttaaagctctttgctggaatacatgaatatgtggtttattctttataatgtgtgaagccctttgtttggatccatgaaaaataaaatcagaaactcatgtcaaacctcccctcacacctgtattacctatcctactctaaatcataccccctcctccccccatcggcaccatagttgttcagccagtgacgccctgcccttttgaaagaagttgagcatcactgccggttcatggctgtttaggcgggaaaattcactccaacgccatgaactggtaaagattggcaatccctgttggctcacaccgaaccgatagagatcagtgggcaaggattgccctttctgtaccagtaacacctttatccactccagttatgaaaaaaaaatgctctttagagttgtttgttccttatttcaactcaacacaacaatatggagttctaaaaaataacacaacattatggagaatactaaataatagtagagatcatagattacttagaagttagaacatacctaaaagggagattttttttttaaaaaaagaattcattttcaatcctatgccttattttcactgacatttggaaagggagtagtatgtctatttggggaagaggttcttttttttttttggggggcggggggggggggggggagggggaagggagggctgctttgattaattcctcccattgtattacatttcacttggatggatcatacctcctattcttctagataccacgaacaaatgtcattgaattatgagatagactaaaatctgcgggtgtcaaagatttcagaaaacttgagtctttgatgtaaatgttggtggaaattgcacccttttatatcaaatgcccattgggtttgtgcagctagcctaaaaaagattattccccattttggaaggttatgtgttacaaatcagacatctccgcaatattttcagaaaactaaagtgggtactaatactatatttttgcatgatcctggcctaaggtggtattacaatctgttgagatatgcaatggtcaaagagtggtactgtacattctattagagagctagattttattttgaactctagatgtgggtaactgatgatactggattgacgaaagccgaaagcccatctttatgagttttttaaggacttggtaggatcaatatataaacttttaataggagaaaatgtacatttactataaccaatttttacatgacgcctcgacaggaggcacccctcccctaggcatgcctctaaagttagccctgttagtgttctatcccttttgagcagaccattcttgagtaggttacaaatgtcacactgtttgatactccatttgtcctaaaatataaggtggccatatatagttttagcaaaaccaacatatgtaggttttgacaaataacaaactaacaatatactgtatatgtttaatgccatccatttcatatcctaagattcatatttgaaagcactcttgtatgatgtaattttctagttcttgataatatattattgaagaaactaattgttaaaatataatattgtagacagtgtaagaaaactaatatgctttatagtttgagactgataggactattataaaaaggtcctcctattacacttgatgagaatgatggtaaaattgcatgatatataatttgtgaaagctggcacatattcaatgaaatcgatatattctttggatgatcacgggtgtttctgggccaaatttctactttatttgtaatcccgagagcttcatctacaagtaaaaaaaaaatccaggtttttagttgataatgtagtctatcttaataaaggaagagatgcaaaggaggaaatttcctgcaaacaccggaatgtcttttcttccctgactgaaaatacagttttgttctttacatgtaaattagctagcaaagttatttaggggcattacaggtttagatatgctttggcaccaaaaccaggtacagaacaaatgttcgctggatgcactgcatcgatcttgatgtactccctatgttcaattatataagacatttttggtttgttctaatcaaacttgaatatacatattttcagtttgaccaaacaatgtagtagtgtttccaacacaaaacaaatatactacagaaatatatttaatggtggatttaatgaaaccaataaagagtatgcgataatagtaagtccatctaatgcataaaatcctggtgcattactatcctaggttaatatggcaccacctatactaagatcttcttctttctcttcatgtttgattgtacatcttgatatttccttccatgtgcatgcatggtttcaacaaaaaaaaaggtaacactgacttgttccaataatacacattgtagttatctatagcccttttttacatacatattacccccattatgtttgcagttgttacccccctttatctgattagagcataaaggacctgtggaatttttactcttataacccgactttttttatctattccataacctacaaatgggtttcctattttgatttgtaaaaataacaaagagaaagcctttgctctgatggtcacaatccttcgatttattccttttgtttgtaataatgttagtaaagtaatccatcagttgatttataaccccctctcgccaatgaaactgattcacttttatgaagtgaggagaaagaagggatcaattaatcgaggatccaatattttagtccctcgaggaagtctcctaaatcattggtagtattcatttgactctactagttacaactaataagacatatttataagaaagaaaatgcagcaggaggattactgatttcaattagttactatgtgcaaaattcagtgctcgcgtgccggggggggggggggaggggcggcaacggagttattgttcctacatacaataaatagtgatgacatgctctagtgaagttatttcagactggatccacatgggtgtctttcttttgtttctttggaaaggcttgttgtagctatctcatcttgataggtcgaaagattcgttcgttagtaacgacttgcttaaacaaagttactccaattttggtccatgtgcatgcatcttaattttttttcttttgttttgaaatccggttgtcatagccatctcaatataggccaaaataagtttttttggtgtttctttccttattagccctaaaaataggcgacaaatgtccaaaattgcaccactgacctataaggatgggcccctagctaagaattaggtgcgactgagacgaggtaaagacctatatatatactaagacatgtaacaccttttttatttttctatttggaaatattcttttccctatttcataggaatgaactaaatttcaaaaaagaaaaagcacacaattactacaaaaaagtatgtgattgaaccattgaccaaagatggcgattattgtctttttcacttggcaaagtaggcaacataatccatctctcggccgccgcttggccatgtcaaactggcttagtgataaaggtcatccccttcgtcgattggctcacaagtgctagaaaaaggggaaaataggacatggcctttggcaggatgtgtttgttgtgtacttgcggtgtgggcggaaagtacaagaagcatgataattgggctgttcagtacataccgatgagtgaggcaacttgaggtagacaaagcaatgaagtgtatggctttggtggtaagattgagtagcctcgtcctccacatttgggtgaacaacaatgcttgatacatgaatatagaaaaagcattggacaatatgcataatggcatgaggcaataacactaacaagccacattgtagactgagatatatattgagtaccacaaccttgttgtaggtagcaaggtcagaacaacactgcaatacattgaaagacataattgactatctttcttggaattatgagcatgttgatacacattccactacagaacaaccattgttcttcaattacctgaataatttgatcctggcccattactggaaaaaataagatggatgagattgcatgcagtcatagttagtgctctggctaggttgctcgtgccaccaagatgcgagattagcacccgagagagtataatgtgtgaaggcacttcctgtgagctgagcctaagggagattacagtgcgtgaagttgcatctgaagtctcaggtctctcgcccacttatggttttgcataatcttcaggacttaacatatgtacctgatgcaagttcagctttgtagaagcataaaatatatgtgacacaagttcaatatgggcgcaactaaaaaacacaatactaactaattaaaagacgcttaattcttttgttcatcaagtctttgtaagagaacttgtcgatgcaaaaaaacataccaaatttggtcgttaacagaactgtacgaagtctttttcatgagagtttaagctaatgagatggctaataagcgagtgacctagtgcttatttctctgtgtcatattcagttgtgtgcgtggatgtatcacgtgacaagtgtttcgctcaacaacaatggtacatatatccaaatgacatagaatatgttgcttgaataaaacataactgatactcgcccaattggaaaattagtcaccgaagccctaccacagttggttttgttttgtacttttatttgagagaaatcaagagatagacaaggataaaagagtgaccagagcgatggtgattatagtgttaaattgtcgttaggaaatcactcaatgtttaaggggctgtttggttcatgatcctggtgaaaaggagcctggcctaatccctccctgtcacatggttgagtgttgtttggttcaaaggcctaaaggattttcaggatgcctgacttgaaccactgccttgcatcctttagcctgcgtccggcttcccattttggagctggcccgagcttcaggcacgtcaactccatgcatgcagttgcttgcgacattgtggtcggaataaaaaatttggcaatagtcccatctatattgattaaatcggaagtatgagcttgttttgattttgattcaaatccttagtttttttcctctaaattaatacttgttaattgctataattgaggagtacgagtttatcagtgttcattgttactgatagacaagagataatcgatgaatgatgaatcttccataacttaggtaagtgttttaccaacatatgtagtgtagtaaaaaaatgaattcaaccctttcgtgcttactataactaattaatttggttttctatttgctcctttaactctaaccctagctctatttattggcttgaacaaggtacatcttatttgaaatgaattgaatgaataaggcaaaaaagaaaaaaaatcattcttttggattcctggtatcctacaactctttttcacactacttacaaattctttttttcttggtcatggataaggctatacataaaatcaatgaatacgttaatatgtatctattaagttgatacatatcttaattaccaatgtgtaatcttgaactcaggctttcctagtcaagcatattttaccaaattctcaagtagctctcagacatacgtttttatcaatcatgttgctcaggtcactaaccaaacaagccctaagttgcaagaacacaaacacgactgatttcgtcaatgagcccaagtcgttggtgtttttaccagatgactcatcactatcggttcctttagagatgacactgatatcactgatggttcgtaattaattaacaagaaattactatgatacttaagtttccactaatgtatcacggttagttcataacaacaaccagcaccgatattcaatggaccagacctcaatggatcggatcatattcaagactatcatgtccattgagtatcaaactatatgtcattagtactcaaatgataatttgaaagaaaatggtaactttttcataagtcaggtgaagacaaacattatgtaaaagtatatagtttaaccaaagctacagctttgtagttgatgattttttgatttttgagattgtttacatgcccaagttgtcaaatctactcggacaaattttttgatattcccaaatgtccttggattgagactaactctacataaaaattggcgacacgatctattaatttttagttgacaatattttcattgtaagtcatttatatgcccgaatatatgttagaagtgttggctctatttggataaacgaaattttaaaatttttcaacgacttcagacaaacatgaactctatatggaagttgtggagatcgatgagatctacagatttgtcattgaagaccgaaaataatagcataagctatttaggcaaaaagagcattatagttgagatgggaggctgtggagatatagttgatcctatgtttgaatcctatgtacctcacacgcacgtacttcatgtgagaaatcatgtgaattgtgatttgtgatgtgtgtagatacttgatacgaaatacttttccaagtttttcatcgtggagagaattcaaaacccggtgcacaactatcaaatacatgttgatgtctttttgttgttctaactagtattaattgttcttaaataaagtggatggaagaagacttgacaccaaagcccgccgttggcagttctaagaacagtcagccctcacttatcacatccatggatggtgaacgatgctttgccttagtggcagagcaaactgtttccattggaggcaattga</dnaseqindica>|
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| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001072867.2 RefSeq:Os12g0189500]|
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| − | }}
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| | [[Category:Genes]] | | [[Category:Genes]] |
| | [[Category:Japonica mRNA]] | | [[Category:Japonica mRNA]] |
| Line 84: |
Line 34: |
| | [[Category:Japonica Chromosome 12]] | | [[Category:Japonica Chromosome 12]] |
| | [[Category:Chromosome 12]] | | [[Category:Chromosome 12]] |
| | + | |
| | + | ==Structured Information== |
