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| − | Please input one-sentence summary here.
| + | The rice '''''Os01g0273800''''' was reported as ''''' OsYUC9''''' in 2012 <ref name="ref1" /> by researchers from Australia. |
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| | ==Annotated Information== | | ==Annotated Information== |
| | + | ===Gene Symbol=== |
| | + | *'''''Os01g0273800''''' '''''<=>''''' '''''OsYUCCA9, OsYUC9, YUC9''''' |
| | ===Function=== | | ===Function=== |
| − | IAA(indole-3-acetic acid) is important during starch deposition in addition to its previously suggested role early in grain development. And IAA production in developing rice grains is controlled via expression of OsTAR1,OsYUC9 and OsYUC11. That is to say, OsYUC9, OsYUC11 and OsTAR1 are IAA biosynthesis genes during the rice grain development. The research notes that IAA content increase by 50-fold correlated with a large increase in the expression of OsYUC9 and OsYUC11.
| + | * IAA production in developing rice grains is controlled via expression of '''''OsTAR1, OsYUC9, OsYUC11''''' and that IAA may be important during starch deposition in addition to its previously suggested role early in grain development. |
| | | | |
| | ===Expression=== | | ===Expression=== |
| − | Please input expression information here.
| + | * '''''OsYUC9''''' was expressed in endosperm. |
| | | | |
| | ===Evolution=== | | ===Evolution=== |
| − | Please input evolution information here.
| + | * Phylogenetic analysis indicated that OsYUC11 and AtYUC10 belong to a separate clade of YUCCAs, which do not have orthologues outside the Angiosperms. This clade may have evolved with a specific role in endosperm. |
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| − | You can also add sub-section(s) at will.
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| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | Please input related labs here.
| + | * Molecular and Cellular Biology, University of New England, Armidale, New South Wales, Australia |
| | + | * Department of Biochemistry and Molecular Biology, University of Massachusetts, Amherst, MA 01003, USA |
| | | | |
| | ==References== | | ==References== |
| − | Please input cited references here.
| + | <references> |
| | + | * <ref name="ref1"> |
| | + | bu-Zaitoon YM, Bennett K, Normanly J, Nonhebel HM. A large increase in IAA |
| | + | during development of rice grains correlates with the expression of tryptophan |
| | + | aminotransferase OsTAR1 and a grain-specific YUCCA. Physiol Plant. 2012 |
| | + | Dec;146(4):487-99. doi: 10.1111/j.1399-3054.2012.01649.x. PubMed PMID: 22582989. |
| | + | </ref> |
| | + | </references> |
| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
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| − | GeneName = Os01g0273800|
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| − | Description = FAD dependent oxidoreductase family protein|
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| − | Version = NM_001049251.1 GI:115435915 GeneID:4325177|
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| − | Length = 5140 bp|
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| − | Definition = Oryza sativa Japonica Group Os01g0273800, complete gene.|
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| − | Source = Oryza sativa Japonica Group
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| − | ORGANISM Oryza sativa Japonica Group
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| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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| − | clade; Ehrhartoideae; Oryzeae; Oryza.
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| − | |
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| − | Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|
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| − | AP = Chromosome 1:9487781..9492920|
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| − | CDS = 9487815..9488447,9491586..9491945,9492564..9492767|
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| − | GCID = <gbrowseImage1>
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| − | name=NC_008394:9487781..9492920
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| − | source=RiceChromosome01
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| − | preset=GeneLocation
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| − | </gbrowseImage1>|
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| − | GSID = <gbrowseImage2>
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| − | name=NC_008394:9487781..9492920
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| − | source=RiceChromosome01
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| − | preset=GeneLocation
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| − | </gbrowseImage2>|
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| − | CDNA = <cdnaseq>atggcggcggtggagcaggatcaggaggaggaggtgatcatcgtcggggcggggccgtcggggctcgcggcggcggcgtgcctgtcggtgcgcggcgtgacgggctgcctcgtcctggagcgcgacgactgcgtggcgtcgctgtggcgccaccgcacctacgaccgcgtccgcctccacctcgccaagcgctactgcgcgctcccgcacgcgccgcacggcgaggcgtcgccgacctacctcccccgcgacgacttcctccgctacctcgacgcctacgcctcccgcttcggcgtccgcgcccgcctccgccgcgaggtccgctcggcgcgctacgacgccgcccgcgcccggtggctcgtcgacgccgtcgacctcgccacgggacgcgcggagcggtacgcggcgaggcacctggtcgccgccgcgggcgagaacgacgagagggtggtgcccgaggtgcccgggatggagacgttccccgggaaggtggtgcacgccgccgactaccggagcgcggaggggttcaaggggaagtccgtgctcgtcgtcggcggcggcaactccggcatggagatcgcctacgacctcgccgtcggcggcgccgccacctccatcgtcatccgcagcgagctgcacctggtgagcaaggagatatggaacttggcgatgacgctgtacaggtacctgccggtgtgggtgatcgacaaggtggtgctgctcatgtgcgccgccgtgttcggcgacaccgcccgctacggcctccggcggccggccgtcgggcccttcaccatgaaggccaccaccacgatgtacccggtcgtggacgtcggcaccttcgccaagatcaggtccggcgagatccgcgtcctcccggccgccatcaagggcgtccgcggccgcgacgtcgagttcgccgacggccagcgccacgccttcgacgccgtcgtcttcgccaccggctaccggagcaccaccaagcactggctcaagagtgatgacgggctgatcggcgacgacgggatggcggggcggagctacccggatcactggaagggggagaacgggctgtactgcgccgggatggtgaggaggggaatctacggcagctacgaggacgcggagcacatcgccgacgacatcagcaagcaactccggagcagcagcaagcctacccacaacaatggctcggcctag</cdnaseq>|
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| − | AA = <aaseq>MAAVEQDQEEEVIIVGAGPSGLAAAACLSVRGVTGCLVLERDDC VASLWRHRTYDRVRLHLAKRYCALPHAPHGEASPTYLPRDDFLRYLDAYASRFGVRAR LRREVRSARYDAARARWLVDAVDLATGRAERYAARHLVAAAGENDERVVPEVPGMETF PGKVVHAADYRSAEGFKGKSVLVVGGGNSGMEIAYDLAVGGAATSIVIRSELHLVSKE IWNLAMTLYRYLPVWVIDKVVLLMCAAVFGDTARYGLRRPAVGPFTMKATTTMYPVVD VGTFAKIRSGEIRVLPAAIKGVRGRDVEFADGQRHAFDAVVFATGYRSTTKHWLKSDD GLIGDDGMAGRSYPDHWKGENGLYCAGMVRRGIYGSYEDAEHIADDISKQLRSSSKPT HNNGSA</aaseq>|
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| − | DNA = <dnaseqindica>35..667#3806..4165#4784..4987#acctctctctcgattcaccacggcggcgacggcaatggcggcggtggagcaggatcaggaggaggaggtgatcatcgtcggggcggggccgtcggggctcgcggcggcggcgtgcctgtcggtgcgcggcgtgacgggctgcctcgtcctggagcgcgacgactgcgtggcgtcgctgtggcgccaccgcacctacgaccgcgtccgcctccacctcgccaagcgctactgcgcgctcccgcacgcgccgcacggcgaggcgtcgccgacctacctcccccgcgacgacttcctccgctacctcgacgcctacgcctcccgcttcggcgtccgcgcccgcctccgccgcgaggtccgctcggcgcgctacgacgccgcccgcgcccggtggctcgtcgacgccgtcgacctcgccacgggacgcgcggagcggtacgcggcgaggcacctggtcgccgccgcgggcgagaacgacgagagggtggtgcccgaggtgcccgggatggagacgttccccgggaaggtggtgcacgccgccgactaccggagcgcggaggggttcaaggggaagtccgtgctcgtcgtcggcggcggcaactccggcatggagatcgcctacgacctcgccgtcggcggcgccgccacctccatcgtcatccgcagcgaggtcagctagcttgcttagctcttgtctcctatactagcttaattataattaattcgtttcaatcgtttccaaattaaattcgatttgccattaaaacgagcgaatttcaagctctgtttatttgtccctcgtttaatttgcttataattaattatttttgatttaccaattaattaatcgaatttgtaccttaaaaaaattatacgaccgaatcgaatatttggtactagtataattgttatttgaccaaatttggtagggccgggccaattaataacatcctagccaccttaaaagagctagatttgccaataattttcgtaacattcttattatttgctagtataccaacccctggccccacacgctagtgagaatgagaaaagctattttttttttgtattttctttggtaccaattaatccatggccccacatgccagtgagtgagagtacccgtgcttgatcagttgatcggtgaggaagtaccttgaattaatttacgaccatcggatcgcctaacggacggctaggatcgagtaatcaagctgagtaattaattaaccataattagttactgacagagatcttaaagagggattaattagcagtggacgcggcgggctcctgaccgtgattaagctctgtaattaattaaaaccatccacgttttcttcctttccaatggatcgatcagtacatgtggttattaatcaccagggttaattacttcattactccctagtgttgctggtactacgtagtagtagcgattaattaagacatgacgacgcaacagtccaaattctttcagtgtggtcctaagctaccatcagtactgatgaaacatgacaaatagagaaactccaactaactttgaaatgaaacaaaaaaacacacgtacggagatcgaaattgatccccaaacaccaacattacaggtttacattaatggtctatatgaaaaaaaattaaaaaagagacagagtataatatgccaataaattcggtgaatagaaggtgtgaccacaaataagacgacgtatatttaattaggacatgggacgtatttagaacagaaataaccacacaatctattcaatggtaaaatgtgtacccacgccgctatatatataaggttaattagtccttaatttagtctctttagactgtgctagctagaatataatcatgtacaggtgtttgtaggcgtgagtaattaagtgtgtgcatcctgacgtgtattttgggcaaccaacatgaaagctgtttttttttttaaaacttgggctctttaattccagaggactcgaaagtggaaataaattaaacaattaaaccaacaacctggcagagaatttcgttgctgtatgattaattacagtagtgtgcatgcttattgcaaattttattagacccaaccatataaaatggtatccgagagctatatcgtgggcggcgccatgtaaaagtataaataacttgactatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattcatcgtcgctggcacatggcctggtctctctcgaactctgacatcacgtgcaggcaaattaaacacatcatcgatcgatcagactacacaatgattttgctcctaattaatctcagccggagaccgcagctgattaaatgcgtaatgtaattcaggtcaggttgcatgcatgcagcataggatccgatgattattttgcttaaaaacatcattaactcgattgttatcaatcacatcacaagcatatatatgtggctcgatccagtatacgtacgttcatctctctgtatgtatgtcgtacgtatatactgtaccgtacgtgcgtcatcgtcatcaggagggaaaaaaacacgttacacgtgcacgcctttgtctgattttcgcatggcgacgccagatccacgcaggcatatcatagtccgtccagcgtccctccggacggcctgggatcctgtcctctagtattttcttgttccaattattaggggagccctctatttgcggctctatttgattcgggctaaatataactatacgtagacagaaagttattcctccctccattctaaaatataagatataactaccattaacccaaaaactaagaaataattattatcgcatcgtagtttagattaccctaataaatagaatacatgcacccaataaaattagagatcttgttgatggaggatttaaataatattattataataaaaaaagatgggctagttaatgacatacatgcatatacgccttatattatgaaataacttgaaacaactttaaaaattagttacgccttatattatggaatggagggagtatatctctacttatttaaatgtagtgtggttatccttcttttttttttccttcttaccgtgtgccaaaagtcgtacggtccttcgtgtgtgcgtaattaccgtaggatctagtttcagagatgtcagtaataatatcattaattaattaaaatttttaatgtaactagtctttgattaatcactatacatctgttggtttagacatcaacacaacgttctataatatccatggaactagcatattgaccgtgcgttgtaacgtgattttaatcaaataaaaaattatcactaagatgttattatcatctcttaattgatgtatatatatttgttactgacatatgaatcctttagtactacactattacttttccttcttataaaaaacatatagttggtgggagtggttgacatataggtcctctagacccacatgccatttttgctaaaaagaaaagttaggagttggtggggggtcggtggcggaacaagaaccaccactactcgagtatagataaacttttttttaaaaaataaaaatataattatatgaaagagctttttatgaaaaatctattaatataaaatttcattttgattttttaaaatattttaatatttagtaatgatttaagatttcgagattttttctacacgcataactgtagtacgtcgtccttactccttagcgaggtaatctcagtgaccattctggttaatcatgcaatctaaattgcaaccaattaattaatcgatcgcagctgcacctggtgagcaaggagatatggaacttggcgatgacgctgtacaggtacctgccggtgtgggtgatcgacaaggtggtgctgctcatgtgcgccgccgtgttcggcgacaccgcccgctacggcctccggcggccggccgtcgggcccttcaccatgaaggccaccaccacgatgtacccggtcgtggacgtcggcaccttcgccaagatcaggtccggcgagatccgcgtcctcccggccgccatcaagggcgtccgcggccgcgacgtcgagttcgccgacggccagcgccacgccttcgacgccgtcgtcttcgccaccggctaccggagcaccaccaagcactggctcaaggtaattgtaattaattaataagttaattaattgaacagtactgtgttaattgtttgcatcatgattcgtacgtgcggcgacacaattaattattgctgctcccggccgtatgcatattcctatttggaaaagtctgaggctttggcatgaagcaaagctcgacaaggtctcaactttcagcagcatacacctcatgctgaacgtacatactgatccgtctcgtaatataaagtattttttgatggatgtgacacatcctaatataatatttgtccagattaattaaatcaggatgtgttacatctatccaaaatcccttatattatgagacgaggtagtacatgtttttcgaataatatatcagcgatagctagtgtggcttatgacaacatttttttttcaatccgaaacacacaaaagctttacatgttatttaaccatcaacaataaaagctctaatatttttgtttttttaaaaaacagaatggcacattaaaaatcatgttttaattaaccttattgtacgatcttaactatgccatatgctagatagtaccttatttatatattttacatatgttttctaacatttgtgtgtaattaaatttaattttatagagtgatgacgggctgatcggcgacgacgggatggcggggcggagctacccggatcactggaagggggagaacgggctgtactgcgccgggatggtgaggaggggaatctacggcagctacgaggacgcggagcacatcgccgacgacatcagcaagcaactccggagcagcagcaagcctacccacaacaatggctcggcctagaaagaaattaaatcaagctgatgaggctctcccccttggaccttgtcttggttattatattaggtgtagcttttatactatgattttgtttctgagtttgtggatgtggatgaaataaacaaaataaaacttgcccttgggtggtctttgatt</dnaseqindica>|
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| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001049251.1 RefSeq:Os01g0273800]|
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| − | }}
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| | [[Category:Genes]] | | [[Category:Genes]] |
| | [[Category:Japonica mRNA]] | | [[Category:Japonica mRNA]] |
