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| − | Please input one-sentence summary here.
| + | The rice '''''Os01g0273800''''' was reported as ''''' OsYUC9''''' in 2012 <ref name="ref1" /> by researchers from Australia. |
| | | | |
| | ==Annotated Information== | | ==Annotated Information== |
| | + | ===Gene Symbol=== |
| | + | *'''''Os01g0273800''''' '''''<=>''''' '''''OsYUCCA9, OsYUC9, YUC9''''' |
| | ===Function=== | | ===Function=== |
| − | IAA（indole-3-acetic acid）is important during starch deposition in addition to its previously suggested role early in grain development. OsYUC9, is a kind of IAA biosynthesis gene. OsYUC9 and its encoded enzymes may have a role in the starch deposition phase in rice grains.
| + | * IAA production in developing rice grains is controlled via expression of '''''OsTAR1, OsYUC9, OsYUC11''''' and that IAA may be important during starch deposition in addition to its previously suggested role early in grain development. |
| − | | |
| − | ===Gene type===
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| − | protein coding
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| − | | |
| − | ===General protein information===
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| − | Names：hypothetical protein
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| − | ----
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| − | FAD dependent oxidoreductase family protein~contains InterPro domain(s): IPR013027, IPR000103, IPR000960, IPR006076, IPR000205~has GO asignment(s): GO:0004497, GO:0006118, GO:0016491~supported by AK109645
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| − | ----
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| | | | |
| | ===Expression=== | | ===Expression=== |
| − | The expression of OsYUC9 is localized primarily in the endosperm. In the developing grains, OsYUC9 is co-expressed with OsTAR1 both temporally and spatially.
| + | * '''''OsYUC9''''' was expressed in endosperm. |
| | | | |
| | ===Evolution=== | | ===Evolution=== |
| − | [[File:yxm.jpg]]
| + | * Phylogenetic analysis indicated that OsYUC11 and AtYUC10 belong to a separate clade of YUCCAs, which do not have orthologues outside the Angiosperms. This clade may have evolved with a specific role in endosperm. |
| | | | |
| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | ----
| + | * Molecular and Cellular Biology, University of New England, Armidale, New South Wales, Australia |
| − | 1、Molecular and Cellular Biology, University of New England, Armidale, New South Wales, Australia
| + | * Department of Biochemistry and Molecular Biology, University of Massachusetts, Amherst, MA 01003, USA |
| − | ----
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| − | 2、Department of Biochemistry and Molecular Biology, University of Massachusetts, Amherst, MA 01003,USA
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| − | ----
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| | | | |
| | ==References== | | ==References== |
| − | 1、Yousef M. Abu-Zaitoon, Karina Benett, Jennifer Normanly and Heather M. Nonhebel(2012), A large increase in IAA during development of rice grains correlates with the expressing of tryptophan aminotransferase OsTAR1 and a grain-specific YUCCA, Physiologia Plantarum 146:487-499
| + | <references> |
| − | ----
| + | * <ref name="ref1"> |
| − | 2、Edgar RC(2004)MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792-1797
| + | bu-Zaitoon YM, Bennett K, Normanly J, Nonhebel HM. A large increase in IAA |
| − | ----
| + | during development of rice grains correlates with the expression of tryptophan |
| − | 3、Felsenstein J(1989)PHYLIP-Phylogeny Inference Package(Version 3.2). Cladistics 5:164-166
| + | aminotransferase OsTAR1 and a grain-specific YUCCA. Physiol Plant. 2012 |
| − | ----
| + | Dec;146(4):487-99. doi: 10.1111/j.1399-3054.2012.01649.x. PubMed PMID: 22582989. |
| − | 4、Information from NCBI:
| + | </ref> |
| − | [http://www.ncbi.nlm.nih.gov/gene/?term=Os01g0273800]
| + | </references> |
| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
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| − | GeneName = Os01g0273800|
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| − | Description = FAD dependent oxidoreductase family protein|
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| − | Version = NM_001049251.1 GI:115435915 GeneID:4325177|
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| − | Length = 5140 bp|
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| − | Definition = Oryza sativa Japonica Group Os01g0273800, complete gene.|
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| − | Source = Oryza sativa Japonica Group
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| | | | |
| − | ORGANISM Oryza sativa Japonica Group
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| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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| − | clade; Ehrhartoideae; Oryzeae; Oryza.
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| − | |
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| − | Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|
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| − | AP = Chromosome 1:9487781..9492920|
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| − | CDS = 9487815..9488447,9491586..9491945,9492564..9492767|
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| − | GCID = <gbrowseImage1>
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| − | name=NC_008394:9487781..9492920
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| − | source=RiceChromosome01
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| − | preset=GeneLocation
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| − | </gbrowseImage1>|
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| − | GSID = <gbrowseImage2>
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| − | name=NC_008394:9487781..9492920
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| − | source=RiceChromosome01
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| − | preset=GeneLocation
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| − | </gbrowseImage2>|
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| − | CDNA = <cdnaseq>atggcggcggtggagcaggatcaggaggaggaggtgatcatcgtcggggcggggccgtcggggctcgcggcggcggcgtgcctgtcggtgcgcggcgtgacgggctgcctcgtcctggagcgcgacgactgcgtggcgtcgctgtggcgccaccgcacctacgaccgcgtccgcctccacctcgccaagcgctactgcgcgctcccgcacgcgccgcacggcgaggcgtcgccgacctacctcccccgcgacgacttcctccgctacctcgacgcctacgcctcccgcttcggcgtccgcgcccgcctccgccgcgaggtccgctcggcgcgctacgacgccgcccgcgcccggtggctcgtcgacgccgtcgacctcgccacgggacgcgcggagcggtacgcggcgaggcacctggtcgccgccgcgggcgagaacgacgagagggtggtgcccgaggtgcccgggatggagacgttccccgggaaggtggtgcacgccgccgactaccggagcgcggaggggttcaaggggaagtccgtgctcgtcgtcggcggcggcaactccggcatggagatcgcctacgacctcgccgtcggcggcgccgccacctccatcgtcatccgcagcgagctgcacctggtgagcaaggagatatggaacttggcgatgacgctgtacaggtacctgccggtgtgggtgatcgacaaggtggtgctgctcatgtgcgccgccgtgttcggcgacaccgcccgctacggcctccggcggccggccgtcgggcccttcaccatgaaggccaccaccacgatgtacccggtcgtggacgtcggcaccttcgccaagatcaggtccggcgagatccgcgtcctcccggccgccatcaagggcgtccgcggccgcgacgtcgagttcgccgacggccagcgccacgccttcgacgccgtcgtcttcgccaccggctaccggagcaccaccaagcactggctcaagagtgatgacgggctgatcggcgacgacgggatggcggggcggagctacccggatcactggaagggggagaacgggctgtactgcgccgggatggtgaggaggggaatctacggcagctacgaggacgcggagcacatcgccgacgacatcagcaagcaactccggagcagcagcaagcctacccacaacaatggctcggcctag</cdnaseq>|
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| − | AA = <aaseq>MAAVEQDQEEEVIIVGAGPSGLAAAACLSVRGVTGCLVLERDDC VASLWRHRTYDRVRLHLAKRYCALPHAPHGEASPTYLPRDDFLRYLDAYASRFGVRAR LRREVRSARYDAARARWLVDAVDLATGRAERYAARHLVAAAGENDERVVPEVPGMETF PGKVVHAADYRSAEGFKGKSVLVVGGGNSGMEIAYDLAVGGAATSIVIRSELHLVSKE IWNLAMTLYRYLPVWVIDKVVLLMCAAVFGDTARYGLRRPAVGPFTMKATTTMYPVVD VGTFAKIRSGEIRVLPAAIKGVRGRDVEFADGQRHAFDAVVFATGYRSTTKHWLKSDD GLIGDDGMAGRSYPDHWKGENGLYCAGMVRRGIYGSYEDAEHIADDISKQLRSSSKPT HNNGSA</aaseq>|
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| − | DNA = <dnaseqindica>35..667#3806..4165#4784..4987#acctctctctcgattcaccacggcggcgacggcaatggcggcggtggagcaggatcaggaggaggaggtgatcatcgtcggggcggggccgtcggggctcgcggcggcggcgtgcctgtcggtgcgcggcgtgacgggctgcctcgtcctggagcgcgacgactgcgtggcgtcgctgtggcgccaccgcacctacgaccgcgtccgcctccacctcgccaagcgctactgcgcgctcccgcacgcgccgcacggcgaggcgtcgccgacctacctcccccgcgacgacttcctccgctacctcgacgcctacgcctcccgcttcggcgtccgcgcccgcctccgccgcgaggtccgctcggcgcgctacgacgccgcccgcgcccggtggctcgtcgacgccgtcgacctcgccacgggacgcgcggagcggtacgcggcgaggcacctggtcgccgccgcgggcgagaacgacgagagggtggtgcccgaggtgcccgggatggagacgttccccgggaaggtggtgcacgccgccgactaccggagcgcggaggggttcaaggggaagtccgtgctcgtcgtcggcggcggcaactccggcatggagatcgcctacgacctcgccgtcggcggcgccgccacctccatcgtcatccgcagcgaggtcagctagcttgcttagctcttgtctcctatactagcttaattataattaattcgtttcaatcgtttccaaattaaattcgatttgccattaaaacgagcgaatttcaagctctgtttatttgtccctcgtttaatttgcttataattaattatttttgatttaccaattaattaatcgaatttgtaccttaaaaaaattatacgaccgaatcgaatatttggtactagtataattgttatttgaccaaatttggtagggccgggccaattaataacatcctagccaccttaaaagagctagatttgccaataattttcgtaacattcttattatttgctagtataccaacccctggccccacacgctagtgagaatgagaaaagctattttttttttgtattttctttggtaccaattaatccatggccccacatgccagtgagtgagagtacccgtgcttgatcagttgatcggtgaggaagtaccttgaattaatttacgaccatcggatcgcctaacggacggctaggatcgagtaatcaagctgagtaattaattaaccataattagttactgacagagatcttaaagagggattaattagcagtggacgcggcgggctcctgaccgtgattaagctctgtaattaattaaaaccatccacgttttcttcctttccaatggatcgatcagtacatgtggttattaatcaccagggttaattacttcattactccctagtgttgctggtactacgtagtagtagcgattaattaagacatgacgacgcaacagtccaaattctttcagtgtggtcctaagctaccatcagtactgatgaaacatgacaaatagagaaactccaactaactttgaaatgaaacaaaaaaacacacgtacggagatcgaaattgatccccaaacaccaacattacaggtttacattaatggtctatatgaaaaaaaattaaaaaagagacagagtataatatgccaataaattcggtgaatagaaggtgtgaccacaaataagacgacgtatatttaattaggacatgggacgtatttagaacagaaataaccacacaatctattcaatggtaaaatgtgtacccacgccgctatatatataaggttaattagtccttaatttagtctctttagactgtgctagctagaatataatcatgtacaggtgtttgtaggcgtgagtaattaagtgtgtgcatcctgacgtgtattttgggcaaccaacatgaaagctgtttttttttttaaaacttgggctctttaattccagaggactcgaaagtggaaataaattaaacaattaaaccaacaacctggcagagaatttcgttgctgtatgattaattacagtagtgtgcatgcttattgcaaattttattagacccaaccatataaaatggtatccgagagctatatcgtgggcggcgccatgtaaaagtataaataacttgactatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattcatcgtcgctggcacatggcctggtctctctcgaactctgacatcacgtgcaggcaaattaaacacatcatcgatcgatcagactacacaatgattttgctcctaattaatctcagccggagaccgcagctgattaaatgcgtaatgtaattcaggtcaggttgcatgcatgcagcataggatccgatgattattttgcttaaaaacatcattaactcgattgttatcaatcacatcacaagcatatatatgtggctcgatccagtatacgtacgttcatctctctgtatgtatgtcgtacgtatatactgtaccgtacgtgcgtcatcgtcatcaggagggaaaaaaacacgttacacgtgcacgcctttgtctgattttcgcatggcgacgccagatccacgcaggcatatcatagtccgtccagcgtccctccggacggcctgggatcctgtcctctagtattttcttgttccaattattaggggagccctctatttgcggctctatttgattcgggctaaatataactatacgtagacagaaagttattcctccctccattctaaaatataagatataactaccattaacccaaaaactaagaaataattattatcgcatcgtagtttagattaccctaataaatagaatacatgcacccaataaaattagagatcttgttgatggaggatttaaataatattattataataaaaaaagatgggctagttaatgacatacatgcatatacgccttatattatgaaataacttgaaacaactttaaaaattagttacgccttatattatggaatggagggagtatatctctacttatttaaatgtagtgtggttatccttcttttttttttccttcttaccgtgtgccaaaagtcgtacggtccttcgtgtgtgcgtaattaccgtaggatctagtttcagagatgtcagtaataatatcattaattaattaaaatttttaatgtaactagtctttgattaatcactatacatctgttggtttagacatcaacacaacgttctataatatccatggaactagcatattgaccgtgcgttgtaacgtgattttaatcaaataaaaaattatcactaagatgttattatcatctcttaattgatgtatatatatttgttactgacatatgaatcctttagtactacactattacttttccttcttataaaaaacatatagttggtgggagtggttgacatataggtcctctagacccacatgccatttttgctaaaaagaaaagttaggagttggtggggggtcggtggcggaacaagaaccaccactactcgagtatagataaacttttttttaaaaaataaaaatataattatatgaaagagctttttatgaaaaatctattaatataaaatttcattttgattttttaaaatattttaatatttagtaatgatttaagatttcgagattttttctacacgcataactgtagtacgtcgtccttactccttagcgaggtaatctcagtgaccattctggttaatcatgcaatctaaattgcaaccaattaattaatcgatcgcagctgcacctggtgagcaaggagatatggaacttggcgatgacgctgtacaggtacctgccggtgtgggtgatcgacaaggtggtgctgctcatgtgcgccgccgtgttcggcgacaccgcccgctacggcctccggcggccggccgtcgggcccttcaccatgaaggccaccaccacgatgtacccggtcgtggacgtcggcaccttcgccaagatcaggtccggcgagatccgcgtcctcccggccgccatcaagggcgtccgcggccgcgacgtcgagttcgccgacggccagcgccacgccttcgacgccgtcgtcttcgccaccggctaccggagcaccaccaagcactggctcaaggtaattgtaattaattaataagttaattaattgaacagtactgtgttaattgtttgcatcatgattcgtacgtgcggcgacacaattaattattgctgctcccggccgtatgcatattcctatttggaaaagtctgaggctttggcatgaagcaaagctcgacaaggtctcaactttcagcagcatacacctcatgctgaacgtacatactgatccgtctcgtaatataaagtattttttgatggatgtgacacatcctaatataatatttgtccagattaattaaatcaggatgtgttacatctatccaaaatcccttatattatgagacgaggtagtacatgtttttcgaataatatatcagcgatagctagtgtggcttatgacaacatttttttttcaatccgaaacacacaaaagctttacatgttatttaaccatcaacaataaaagctctaatatttttgtttttttaaaaaacagaatggcacattaaaaatcatgttttaattaaccttattgtacgatcttaactatgccatatgctagatagtaccttatttatatattttacatatgttttctaacatttgtgtgtaattaaatttaattttatagagtgatgacgggctgatcggcgacgacgggatggcggggcggagctacccggatcactggaagggggagaacgggctgtactgcgccgggatggtgaggaggggaatctacggcagctacgaggacgcggagcacatcgccgacgacatcagcaagcaactccggagcagcagcaagcctacccacaacaatggctcggcctagaaagaaattaaatcaagctgatgaggctctcccccttggaccttgtcttggttattatattaggtgtagcttttatactatgattttgtttctgagtttgtggatgtggatgaaataaacaaaataaaacttgcccttgggtggtctttgatt</dnaseqindica>|
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| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001049251.1 RefSeq:Os01g0273800]|
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| − | }}
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| | [[Category:Genes]] | | [[Category:Genes]] |
| | [[Category:Japonica mRNA]] | | [[Category:Japonica mRNA]] |
