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| − | {{JaponicaGene|
| + | The rice '''Os02g0504500''' was reported as '''''ZOS2-07''''' in 2007 <ref name="ref1" /> by researchers from the India. It is a member of C2H2 transcription factor gene family. |
| − | GeneName = Os02g0504500|
| |
| − | Description = UBA-like domain containing protein|
| |
| − | Version = NM_001053447.1 GI:115446264 GeneID:4329431|
| |
| − | Length = 5409 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os02g0504500, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os02g0504500''''' '''''<=>''''' '''''ZOS2-07''''' |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | |
| − | |
| + | ===Function=== |
| − | Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
| + | * The Cys 2/His 2 zinc-finger proteins (ZFPs) constitute one of the largest transcription factor class regulatory protein families in eukaryotes. <ref name="ref1" /> <ref name="ref2" /> |
| − | AP = Chromosome 2:18709618..18715026|
| + | * The classical C2H2 zinc finger domain is involved in a wide range of functions and can bind to DNA, RNA and proteins. |
| − | CDS = 18709734..18709901,18710041..18710191,18710292..18710387,18711105..18711181,18711705..18711784<br>,18712294..18712354,18713231..18713298,18713390..18713471,18713630..18713716<br>,18714087..18714164,18714414..18714533,18714632..18714808|
| + | * Plant Q-type C2H2 zinc finger transcription factors play an important role in plant tolerance to various environmental stresses such as drought, cold, osmotic stress, wounding and mechanical loading. |
| − | GCID = <gbrowseImage1>
| + | * The ZFPs not only interact with DNA or chromatin but their interactions with RNA and other proteins are also well documented in lower as well as higher eukaryotes. |
| − | name=NC_008395:18709618..18715026
| + | |
| − | source=RiceChromosome02
| + | ==Labs working on this gene== |
| − | preset=GeneLocation
| + | * Interdisciplinary Centre for Plant Genomics and Department of Plant Molecular Biology, University of Delhi South Campus, Benito Juarez Road, New Delhi 110021, India |
| − | </gbrowseImage1>| | + | * Division of Genetics, Indian Agricultural Research Institute, New Delhi 110012, India |
| − | GSID = <gbrowseImage2>
| + | * Plant Disease Resistance Research Unit, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba 305-8602 Ibaraki, Japan |
| − | name=NC_008395:18709618..18715026
| + | |
| − | source=RiceChromosome02
| + | ==References== |
| − | preset=GeneLocation
| + | <references> |
| − | </gbrowseImage2>| | + | * <ref name="ref1"> |
| − | CDNA = <cdnaseq>atggcggggctgtcgctgcggtgcggcgactgcggcgtgctgctgcggagcgtggaggaggcgcaggcgcacgccgaggccaccaaccacgccaacttctccgagtccaccgaggccgtcctcaacctcgtctgcgccgcctgcggcaagccctgccgctcccagaccgaggtggacctgcacaccaagcgcacgggccacacggagttcactgacaagaccatggaggcggccaagccaattgatctcgaggcggcgccgccgaagccggccggcgaggccatggatgtcgatgcctcggcaagcgccgagccacaagagatggtggcgccggaggttaacaaggagatgctggcggacctcgaggcgatggggttcacgacggcgcgtgccactagggcacttcatttttctggtaatagcactattgaaggtgccattaactggctttccgagcaccaagaagatccagatattgacgaaccgcttctggtaccggctaatacaataactgaggctaataaaccctctttgtctcctgaggaaatgaagattaaagctcaggaattaagggaacgtgctcgtaaaaagaaagaagaagaagagagaaggatggaaagagaaagggagaaggaaaggattcggatcggtaaagagcttcttgaagccaaaagaattgaggaggataatgaaaggaaacgcatgatagaactgcgaagacttgagaaagaagaggagaaaagagctagagaaaaaatccgtcagaaactggaagaggacaaggctgaaaggagaaggaaacttggattgcccccggaagatccagctgctcctaaaccaagcgcaccacctccggttgaagagaagaagagggcattacctgtcaggccagccacaaaggccgagcgcatgagggattgcttaagaaatcttaagcagcagaacaaggatgacgatgctaaagtgaagagggcttttcaaacactccttacctacattggcaatgtagctaaaaatcctgacgaggagaaattcaggaagatcagactgaccaacgctacatttcaggagagggttggcaatctgcatggaggcatagagtttctccagctctgtggatttgagaaacttgaaggcaacgagttcttgttcttggcaagggacaaggttgacaaggccgtcctgaacactgctggagccgagctgaattctgctatcactaatcctttctttggagtcctttaa</cdnaseq>|
| + | Xu H, Watanabe KA, Zhang L, Shen QJ. WRKY transcription factor genes in wild |
| − | AA = <aaseq>MAGLSLRCGDCGVLLRSVEEAQAHAEATNHANFSESTEAVLNLV CAACGKPCRSQTEVDLHTKRTGHTEFTDKTMEAAKPIDLEAAPPKPAGEAMDVDASAS AEPQEMVAPEVNKEMLADLEAMGFTTARATRALHFSGNSTIEGAINWLSEHQEDPDID EPLLVPANTITEANKPSLSPEEMKIKAQELRERARKKKEEEERRMEREREKERIRIGK ELLEAKRIEEDNERKRMIELRRLEKEEEKRAREKIRQKLEEDKAERRRKLGLPPEDPA APKPSAPPPVEEKKRALPVRPATKAERMRDCLRNLKQQNKDDDAKVKRAFQTLLTYIG NVAKNPDEEKFRKIRLTNATFQERVGNLHGGIEFLQLCGFEKLEGNEFLFLARDKVDK AVLNTAGAELNSAITNPFFGVL</aaseq>|
| + | rice Oryza nivara. DNA Res. 2016 Aug;23(4):311-23. doi: 10.1093/dnares/dsw025. |
| − | DNA = <dnaseqindica>117..284#424..574#675..770#1488..1564#2088..2167#2677..2737#3614..3681#3773..3854#4013..4099#4470..4547#4797..4916#5015..5191#ggtctcgtctcctcgtcttctcgccgccgccgcgagcggaatccccctctctccgtctaaacctcgccgccgcggcgaagcaaaagcacctccctcttcgccgccgcccgccggcaatggcggggctgtcgctgcggtgcggcgactgcggcgtgctgctgcggagcgtggaggaggcgcaggcgcacgccgaggccaccaaccacgccaacttctccgagtccaccgaggccgtcctcaacctcgtctgcgccgcctgcggcaagccctgccgctcccagaccgtgagatccccccatccccctccccaccttccctttggttttcactttctcgatcgaattccgccggattcggtggttctcgatccgattttagtctcacctggttggttgtgtggatctctgatcttgcgcggcgcaggaggtggacctgcacaccaagcgcacgggccacacggagttcactgacaagaccatggaggcggccaagccaattgatctcgaggcggcgccgccgaagccggccggcgaggccatggatgtcgatgcctcggcaagcgccgagccacaaggtgaggtggttgttgttgagatgatcgaaagggttatgatctgtggccgcctttgggtggcaaagagtgttgaatcttggtggctttttgcttccggcagagatggtggcgccggaggttaacaaggagatgctggcggacctcgaggcgatggggttcacgacggcgcgtgccactagggcacttcatttttctggtatggtgtagcaagatagtatgtcttagttcaacatttgtaccatgctgtcaagttctttctccaacttagattttatttattagcaaattattactagagtactccctccttcccataaaaaaccgaatcttagtgtccagattcatccctaagattcggttttttatgggacagaggagtagactgcagatgcagtagaaaagtattaactgttcaagtgtatatatgttcgctcgtgcgactgagctatttgagactttgatctaagaaagtctcggctagaaggctttttatcacagtaaattctggaccaaggatttcagcatatggtgaataaaggaacgacctcgattggaaagtatatgctttgctattgagtcttgcagatcaaataatgctagtgcttgtgcattgcaacaagatacattatgagtgcaaaattagacatacattctgcattgtagtgcctgtggaccgaaatttacaatatgacagaaaaaacaaggcattatatatgcattgaaagctgaactatttgctgtgcttttggacaaaactgtctcagtggaccagaagtcaataagactacgttttgcagtcttacttatatattatgattgtctcatctatattagttaaataaacataacaccttcagtaagcaaaccatgattaattcataactttgtttgcacccatttaattttcctctaggtaatagcactattgaaggtgccattaactggctttccgagcaccaagaagatccagatattgacgaaccgcttctggtatgatgaatttatattttttgttgctgattaattgattatacctttatttgttttggtatgctggtgtgctaaattgccccttgctgaaaaaataatatgttttggatattaagtggttattttggtattattttcatcgtgcttgtgtagtgctacactgaattgcactgtctgacctctgacattctatccatggagtttcagtaatacccaaaacttttactatatttatttattatttgtgcagctcaatgtatttactgtaacaatgaaaacgcatttcaaacatttgaaaaattggcataggttgtccattttggttttttttcccctgcgtatgcccatgtatctaggaccaaacttgcacatttgaatatatctaacctcccacttcagaggttcaattaattgtgtccaatgggagtaatagatgaattctttctgtgttatacctatacttgtccagaaaatttttgctctccagtacataactttacacttaccttctttcatctctcaggtaccggctaatacaataactgaggctaataaaccctctttgtctcctgaggaaatgaagattaaagctcaggaattaaggtgtgttcatgaacttattgctttcttattatctttaatgagttgatggttttatatatatcttcagaaaattgcattgacttgtgtctgtctgtagcactaccttttcctcgttgaaatcagttcaattgacatttaagtacttgtatgctttgtcgtatgtggttgggctttgtaatcgcatgcattggtacgacaatttttttcactgctttaaaaatgataatttttattggacttgaaactcaatataaatgacaatagaattctcatatttaatccctgaagttctatacttttattacattccctacgtattttctttgcacatgataacccccaatatgcagattgtgcacttttttatcgtaccgccttaaacaggaactttgttcaatatttgctctccgtttgtcatattaacactggaacaaccacagatctggcgttatgattctgattttaactttttgttactaaactattgagtttactcactcgatttgtagggaacgtgctcgtaaaaagaaagaagaagaagagagaaggatggaaagagaaagggagaaggtttgttctcaacttctttttaccttatttaatgtatttagaaatgtatgaatcaagattacctgcagcacatttatatatctggtttcttctgtgcagttagatgtgtttttagtcagtatcttgcacagcatatccaaaaaagacatgcattatgcttagtcattacaatcaatagccctttatgatgtattttcatgtaactttgattccacctgccagcaatcttgtacaataacataacacaaatagtttgctggaacttattgattttgtttcatgaaatctcatctcaaatttgtcaatttgtatgaagaaatctgcataagattacttggaagtgcaattatgtctgaagtactgagctagtcttaaatttgttgctgtaatatgtagagttgaaggtatagatggtatctgctgttttcttttgtcacgttatcatgtctttacagggacttcagcctactgtcccctattttgatataagctgctggataagaagtgcaaattatactatatttttcatctgaaaatactgatgagagttgatatcaaagatgaaaattttctctcatttgtctccgttctactagacaacaagtacaaattacgctatgcccttcatttgaagataatgatgagcactaataccaaagcatgaaaatcattggttgttcccctcaaattccagttttatgtttgatgtgatgtgatcttggcattttccagttacacctttgcaatattataattttggtggatctttttccaatattacaattaatagcatattattgttccttacattatatgtggcatatatttctgttcattttttgccagtattttatcttacatattagacatttttaggaaaggattcggatcggtaaagagcttcttgaagccaaaagaattgaggaggataatgaaaggaaacggttggttctttgttccccttttgatttttctgtattttgactagtagtattctgttctccaccccttgactgtttttaccaccacctgcagcatgatagaactgcgaagacttgagaaagaagaggagaaaagagctagagaaaaaatccgtcagaaactggaagaggacaaggtttccatcttctccatctcatcatttcttctattatttatataagaatttctggcgttacatatttgcttcgacataacctggggatatttgtatggttgtcatgtaagtgtcacactctggcaattagacctcaattatttctttctaattaccaggctgaaaggagaaggaaacttggattgcccccggaagatccagctgctcctaaaccaagcgcaccacctccggttgaagagaagaaggtacacctatcgtaattagcagttgatccgaatttcctttcataattagcagttgatccaaatttagtcatttagaccaacctactgccagtttgaacttgcaccctgtactggtcttgagaacctgaattgcctaactgaaccaaatcgctgagatgaatgcgagcaaaaattttatctgattctgaatttctcaggaaacattcagatcttatgccttacatcagtcaatggatttcttgttggaacagcttttgtagaggcctttagatccgaacttagtaggccaaagaatataattgcagattgtataaataaacaatgttttgaaatcattattgccatctaactctgttctatggatttccagagggcattacctgtcaggccagccacaaaggccgagcgcatgagggattgcttaagaaatcttaagcagcagaacaaggtagcatgtagttttaacttgaaatcatcttctatgttactcatatttgtcaggcagattgacacatatccttcattgcatgtgaatacagatgcaactgtaaagacttgagaattctattgtttgttgaaactataccaaaaattgtgttctccctgtagttttagagtggaatcattcaatgctgatataatcatattatatgtttggtattcaatttgacccaattatgggccgtttttgcaacaggatgacgatgctaaagtgaagagggcttttcaaacactccttacctacattggcaatgtagctaaaaatcctgacgaggagaaattcaggaagatcagactgaccaacgctacatttcaggtgaaaataattactgtacatattgacctggtaaaatgatccgctgttatcctttcaagaacaacacgctacttataatctgtttcggtacaatgcaggagagggttggcaatctgcatggaggcatagagtttctccagctctgtggatttgagaaacttgaaggcaacgagttcttgttcttggcaagggacaaggttgacaaggccgtcctgaacactgctggagccgagctgaattctgctatcactaatcctttctttggagtcctttaaatcgtatagaatttccatgtacacttgaacctctctgtttcacctttgcttgaagcacaaatgcacagaaatattgatattgagcgaatgatctttcactgcgctcacttctggtcgccagattgcacgagatggaaggatcttggaaagaatttcccaatatatttcttccaacgattaaagcaataaaacataaatacccacatgaactttaagct</dnaseqindica>|
| + | PubMed PMID: 27345721; PubMed Central PMCID: PMC4991837. |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001053447.1 RefSeq:Os02g0504500]|
| + | </ref> |
| − | }}
| + | * <ref name="ref2"> |
| − | [[Category:Genes]] | + | Englbrecht CC, Schoof H, Böhm S. Conservation, diversification and expansion |
| − | [[Category:Japonica mRNA]]
| + | of C2H2 zinc finger proteins in the Arabidopsis thaliana genome. BMC Genomics. |
| − | [[Category:Oryza Sativa Japonica Group]] | + | 2004 Jul 5;5(1):39. PubMed PMID: 15236668; PubMed Central PMCID: PMC481060. |
| − | [[Category:Japonica Genes]]
| + | </ref> |
| − | [[Category:Japonica Chromosome 2]] | + | |
| − | [[Category:Chromosome 2]]
| + | </references> |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]] |
