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| − | {{JaponicaGene|
| + | The rice '''Os12g0279100''' was reported as '''''ZOS12-04''''' in 2007 <ref name="ref1" /> by researchers from the India. It is a member of C2H2 transcription factor gene family. |
| − | GeneName = Os12g0279100|
| |
| − | Description = Transcription factor jumonji, JmjN domain containing protein|
| |
| − | Version = NM_001073104.1 GI:115488169 GeneID:4351981|
| |
| − | Length = 10016 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os12g0279100, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os12g0279100''''' '''''<=>''''' '''''ZOS12-04''''' |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | |
| − | |
| + | ===Function=== |
| − | Chromosome = [[:category:Japonica Chromosome 12|Chromosome 12]]|
| + | * The Cys 2/His 2 zinc-finger proteins (ZFPs) constitute one of the largest transcription factor class regulatory protein families in eukaryotes. <ref name="ref1" /> <ref name="ref2" /> |
| − | AP = Chromosome 12:10467445..10477460|
| + | * The classical C2H2 zinc finger domain is involved in a wide range of functions and can bind to DNA, RNA and proteins. |
| − | CDS = 10467686..10469316,10469749..10470399,10471017..10471708,10471954..10472104,10473839..10473906<br>,10474006..10474084,10476469..10477297|
| + | * Plant Q-type C2H2 zinc finger transcription factors play an important role in plant tolerance to various environmental stresses such as drought, cold, osmotic stress, wounding and mechanical loading. |
| − | GCID = <gbrowseImage1>
| + | * The ZFPs not only interact with DNA or chromatin but their interactions with RNA and other proteins are also well documented in lower as well as higher eukaryotes. |
| − | name=NC_008405:10467445..10477460
| + | |
| − | source=RiceChromosome12
| + | ==Labs working on this gene== |
| − | preset=GeneLocation
| + | * Interdisciplinary Centre for Plant Genomics and Department of Plant Molecular Biology, University of Delhi South Campus, Benito Juarez Road, New Delhi 110021, India |
| − | </gbrowseImage1>| | + | * Division of Genetics, Indian Agricultural Research Institute, New Delhi 110012, India |
| − | GSID = <gbrowseImage2>
| + | * Plant Disease Resistance Research Unit, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba 305-8602 Ibaraki, Japan |
| − | name=NC_008405:10467445..10477460
| + | |
| − | source=RiceChromosome12
| + | ==References== |
| − | preset=GeneLocation
| + | <references> |
| − | </gbrowseImage2>| | + | * <ref name="ref1"> |
| − | CDNA = <cdnaseq>atgtcgctgcagccgccggcggtggagccgccggagtggctgcggacgctgcccgtggcgccggagtaccacccgacgctggcggagttcgccgaccccatcgcctacatcctcaggatcgagccggaggcgtcccgctacggcatctgcaagatcgtgcccccgctcccgcggccccccgaggacgacaccttccgccgcctccaggccgccttcgccgccgcggcctcctccaatggcgacccctccccgaccttccccacgcggctccagcaggtcggcctctccgccaggaaccgccgcgccgccagccgccgggtgtgggagagcggggagcgctacaccctggaggcgttccgcgccaaggcggccgagttcgagcccccgaggcacgccgcgccgcccaggaaccccacccacctccagctcgaggccctcttctgggccgcctgcgcctccaggcccttcagcgtcgagtacggcaacgacatgcccggctccggcttcgcctcccccgacgagctccccgacgccgccaatgccaccgacgtcggggagacggagtggaacatgcgggtggcgccccgcgcccgggggtcgctgctccgcgccatggcccgcgacgtggcgggcgtcaccaccccgatgctgtacgtggccatgctctacagctggttcgcctggcacgtggaggaccacgagctccacagcctcaacttcctccacttcggcaaggccaagacctggtacggcgtcccccgcgacgccatgctcgccttcgaggagacggtgcgcgtccacggctacgccgacgacctcaacgccatcatggcctttcaaacgttaaatgagaagacaactgtcttatctcctgaggtgcttctttctgctggtgttccctgctgcagattggttcaaaaagcgggagaatttgttatcacattccctggagcttatcattcaggctttagccatggatttaattgtggggaagcatcaaatattgcaactccccattggttacaagtggctaaagaagctgcaatccggagggcttcaactaattgtggtccgatggtgtctcattatcagctgctttatgagctagcactctcattgcgtccaagggagcctaagaatttctattctgttccaagaagctcacgtttaagggacaagaataagaatgaaggtgatataatggtcaaagaaaattttgttggaagtgtaaccgaaaacaacaatttgcttagcgcccttctggataagaattcttgtataattgttccaaacgctgatttcttcgttccatcctttcctgttgcactggaatctgaagttactgttaaacaaaggtttacagctggtccctgcagtattagccagcaaggagcagaaaatatggctgctgatcatgtggctgtagacaaggttacagagattcaggacatgagtggatccttatatccttgtgaaaccagtcttgtgggctgtagcaatagaaaactttatgaaacaaaatatggccaacgggatgctgctgctttgtgcttatctacttcagagattcagagcagaggaattgatacagcaagatcacatccagcaggcgggatcttagatcaaggacggttgccatgtgtacagtgcggaatactaagctttgcatgtgtagccatcattcaacctagagaagcagcagtacagtttatcatgtctaaagagtgcatctcatcgagtgcaaaacaaggaggaattggtgcatctgatgatacctcaaactggattgaccagagtcatgagattagtcctccaccaggtccagcatctggaacagatgataatgtaaagcatgccgtaagtttggcccatgtctctgatcggtgtagagaactatatgccagcaatacagatggatgcacctctgctcttgggcttctagcttctgcatatgactcatcagactctgatgatgaaacaactgaggatgtttcaaaacatagcaagaaaaatgattcagtaaaccaaagcacggatcctcaaatcttggaaacatcagctagctgttccagtacagttcagtgtcaaaagacaaattcacacttgcatgaagaggaatgtgaggcaagagccacatcattgatgaaacctgtaagccataatagtaggcccattagtcagtctaacagggatacagatatcgaccattttatagaactgggaaagtcaggaacacagtgttcaggttatcttgatttggttgatgatctaactacatcagttttaaaatcctcttcagatacttgtgtaagtgcagctaaagcctcaatggatccagatgttttgaccatgctcaggtacaataaagactcttgcagaatgcatgtgttttgtcttgaacatgctttggaaacatggacacagcttcaacaaatcggtggtgctaatattatgcttttgtgccatccagaataccctagagcagagtcagcagcaaaagtcatagcagaagaacttggtatcaagcatgattggaaagatatcactttcaaagaagcaactgaagaggacgttaaaaagattcagttggctttacaggatgaagatgctgaacccactggcagtgactgggcagtcaaaatgggtatcaacatatattacagtgccaaacagagcaaatcaccactttacagcaagcagataccatacaattccatcatttataaggcatttggccaagaaaacccagacagtttgacagattatggatgtcaaaagtcaggctcaacaaagaaaaaggtggctgggtggtggtgtgggaaagtttggatgtcaaatcaagttcatccacttctagctcgtgagcgtgaagaacagaacagtagcgtagtgtacggcaaagcaatgttcactactatttcccatggcaaagtacaagatgaagcgtcaacaagatgcaatacaagcaaccgaaccccatcaagaagaacatcaagaagaaaaaagggggtatctgctgagaaatctaaaccaaaaaacaagagatccactgcttctgatgaagctagtatgctttgcagtggccttggaatgaactctggagttatccatgaccaaactgaaaactctgatgattatgacaaacatggcaatggagatgaaattgaggaaggaacaaatcctcagaaatatcaacaacgtaaattgcaaaacgtgaccaggaaatcaagttctaagaagcggaaggatgagaaaagaacagatagttttcatgaactatatgacgaggataatggtgtggattattggcttaacatgggtagtggagatgatgccacactaggtaactctcgacaacaaagtcctgatccagtgaaagtgaaatctggaggcaaattgcaaggtaagagaaaatctagcaagtacaagtccaatgatgatttgttgaatgaagaaaataagttacaaaagatgaacaaaaaatcaagctctaagaagcaaaagaatgataagataaatagacaacttcaagaagatcaaaccgaagatgaccatatggaccacttagttgacgtagcggttgcagatgaagtcacactagacaatgaggataaaattacagaagacaaaattgatgacgtgaaagtgaaatctagaggaaaatcgcaaaatggtaagagaaaaggcagcaaacatcaggctaccgatggtttgcgcgctggaaataaagtggccaaatttccgtgtgatatagaaggatgtgacatgagcttcagtacccagcaggacttgttattgcataagcgtgacatttgtcctgtcaaaggatgcaagaagaagttcttctgccacaagtacttgcttcagcaccggaaggtgcatatagatgaaaggccacttaagtgtacatggaaggggtgtaagaaggcattcaagtggccatgggcgaggacggagcacatgagagtccatacgggggtaagaccttacgagtgccaggaacctggctgtggtcagacattccgattcgtttcagatttcagccgccacaagagaaagactggccattcctctgataagagaagaaagaacagtacataa</cdnaseq>|
| + | Xu H, Watanabe KA, Zhang L, Shen QJ. WRKY transcription factor genes in wild |
| − | AA = <aaseq>MSLQPPAVEPPEWLRTLPVAPEYHPTLAEFADPIAYILRIEPEA SRYGICKIVPPLPRPPEDDTFRRLQAAFAAAASSNGDPSPTFPTRLQQVGLSARNRRA ASRRVWESGERYTLEAFRAKAAEFEPPRHAAPPRNPTHLQLEALFWAACASRPFSVEY GNDMPGSGFASPDELPDAANATDVGETEWNMRVAPRARGSLLRAMARDVAGVTTPMLY VAMLYSWFAWHVEDHELHSLNFLHFGKAKTWYGVPRDAMLAFEETVRVHGYADDLNAI MAFQTLNEKTTVLSPEVLLSAGVPCCRLVQKAGEFVITFPGAYHSGFSHGFNCGEASN IATPHWLQVAKEAAIRRASTNCGPMVSHYQLLYELALSLRPREPKNFYSVPRSSRLRD KNKNEGDIMVKENFVGSVTENNNLLSALLDKNSCIIVPNADFFVPSFPVALESEVTVK QRFTAGPCSISQQGAENMAADHVAVDKVTEIQDMSGSLYPCETSLVGCSNRKLYETKY GQRDAAALCLSTSEIQSRGIDTARSHPAGGILDQGRLPCVQCGILSFACVAIIQPREA AVQFIMSKECISSSAKQGGIGASDDTSNWIDQSHEISPPPGPASGTDDNVKHAVSLAH VSDRCRELYASNTDGCTSALGLLASAYDSSDSDDETTEDVSKHSKKNDSVNQSTDPQI LETSASCSSTVQCQKTNSHLHEEECEARATSLMKPVSHNSRPISQSNRDTDIDHFIEL GKSGTQCSGYLDLVDDLTTSVLKSSSDTCVSAAKASMDPDVLTMLRYNKDSCRMHVFC LEHALETWTQLQQIGGANIMLLCHPEYPRAESAAKVIAEELGIKHDWKDITFKEATEE DVKKIQLALQDEDAEPTGSDWAVKMGINIYYSAKQSKSPLYSKQIPYNSIIYKAFGQE NPDSLTDYGCQKSGSTKKKVAGWWCGKVWMSNQVHPLLAREREEQNSSVVYGKAMFTT ISHGKVQDEASTRCNTSNRTPSRRTSRRKKGVSAEKSKPKNKRSTASDEASMLCSGLG MNSGVIHDQTENSDDYDKHGNGDEIEEGTNPQKYQQRKLQNVTRKSSSKKRKDEKRTD SFHELYDEDNGVDYWLNMGSGDDATLGNSRQQSPDPVKVKSGGKLQGKRKSSKYKSND DLLNEENKLQKMNKKSSSKKQKNDKINRQLQEDQTEDDHMDHLVDVAVADEVTLDNED KITEDKIDDVKVKSRGKSQNGKRKGSKHQATDGLRAGNKVAKFPCDIEGCDMSFSTQQ DLLLHKRDICPVKGCKKKFFCHKYLLQHRKVHIDERPLKCTWKGCKKAFKWPWARTEH MRVHTGVRPYECQEPGCGQTFRFVSDFSRHKRKTGHSSDKRRKNST</aaseq>|
| + | rice Oryza nivara. DNA Res. 2016 Aug;23(4):311-23. doi: 10.1093/dnares/dsw025. |
| − | DNA = <dnaseqindica>8145..9775#7062..7712#5753..6444#5357..5507#3555..3622#3377..3455#164..992#actacccccaaagcagcagcaagcggcatcagcagcgagcacccaagctaagccagcagcagcagcagcagcagccaagccaattcccccaaatcgcctcctcccaaatgcgactcctcctcctcccctgacgaaaccctccccctccgcctccgcctccgccatgtcgctgcagccgccggcggtggagccgccggagtggctgcggacgctgcccgtggcgccggagtaccacccgacgctggcggagttcgccgaccccatcgcctacatcctcaggatcgagccggaggcgtcccgctacggcatctgcaagatcgtgcccccgctcccgcggccccccgaggacgacaccttccgccgcctccaggccgccttcgccgccgcggcctcctccaatggcgacccctccccgaccttccccacgcggctccagcaggtcggcctctccgccaggaaccgccgcgccgccagccgccgggtgtgggagagcggggagcgctacaccctggaggcgttccgcgccaaggcggccgagttcgagcccccgaggcacgccgcgccgcccaggaaccccacccacctccagctcgaggccctcttctgggccgcctgcgcctccaggcccttcagcgtcgagtacggcaacgacatgcccggctccggcttcgcctcccccgacgagctccccgacgccgccaatgccaccgacgtcggggagacggagtggaacatgcgggtggcgccccgcgcccgggggtcgctgctccgcgccatggcccgcgacgtggcgggcgtcaccaccccgatgctgtacgtggccatgctctacagctggttcgcctggcacgtggaggaccacgagctccacagcctcaacttcctccacttcggcaaggccaagacctggtacggcgtcccccgcgacgccatgctcgccttcgaggagacggtgcgcgtccacggctacgccgacgacctcaacgccatcagtgagttgtcctcagtctcctcctcctgctgcttttactgttcttcagttttcttgcctgatgaaagaaaaggtcgcatgggtcaccaccccttttccttttgacgcccaagagtcaaaaccttttcgtcagagaatcttcacacaccattgctaaatttttaccgaaatgggaatttctttttttcctgaaaatattatggtggttagtgtgtcgactactactccaggtgagccattatgtgactgcaatagcttgtaaattaagtagaaattgttgtcctttagagaaactatatatgagcatcattactaagcctttttagttactgaagctgtggacctaaatactaagccctctgctagtgtgactcatcttacttcttaggcaaacaggaataaagaaatagctgatagttgcaattcagcgaatacagtagtcattatgtttatgtgatctgccacctggttgatttgctcatccacaaacactaagaaacaaatttatggagctatggaaatgttgccccaatctggtttaacaaagtatctgatgcattggcctattattaaacccttagaaatcgtaatgataggggatttccttgaaaagagagtattatagtgtatttgtaagattcagatttggcttgacaaccgattctactaggattggactccaaggacatgcagacatgcaaattagaatttagaattacatgtaaagggtctctacccagagtcataatgtacatcctgtttggatcctccatgttcagttttaagatgaagatgtctatccaagattctgctacatttttgtttacttcatttaatgagcaagattaaggatgcccttaacaagaatgttgcaactaaatcctccatgatcatgcatatcaaatttcctccacatgtcctcatctgtatgtccccaaatgtcccaaagatatttgtaacagatcactaatatcttctattagtcattgttgtcctcatcagtatgttatcatgttgccacgccacatcagtcaatcgggagctactctcaccatatttgttggtatactactctagcgtgccagctgtgctcctcttctgcctagtttctgtgatatatcccttgccagttgcagtgacttggaaaatcatttttggttgatttacttgtgtttgattatgtagacatgaatgtactaccacaatttgtttacttgagattttaatttataatttctgtttggtccttgtaaaaaatttaatttactaccaccttgtaagaaccatcaaaatatatccaattctcaaggtcttaggacaccctaaaagaccttaaagcaacactcatacaagtaccagatgagattagtgcgaaaaatataggggcatggaagcaattgttgtaggcttatactttaggagatccttatgaaagataactctgcactcaatgcaatagtaggcataataaaggtggcaacaaagacctagcacaatgtctggtgagaccttgggtctgtatggatggaacatttcttttactgtgaacgagaatttagttatcttttcatatagtgacagatattccaaacctctgatctgatgatatttgtatcacttccaattctgcattggatgaacgaatgctttatttgttgtcaggaggtaatgttctttcttttcaccatcgtatggttgtgatatgtcatatgtgtttatgctaataaaaaggagatggagatgatgatgcggtgatttcttaatcatgatacattgcggtgccaagcagtgaaggtagtccattgataagatcttccatgagagggagagtgcaacagtgcatatttttttaggttgattataaaaaaacaattctaacctcggtaaatgaatggttagattcagttgcccaccttgtttgtttgtttgtttcggtaactctttaattactgtaaaagtttctctcaatttcagatttcatttgatactaaatcctggatgggtcaaatgaatccagtaacagcttaccaatgtaaaagatttgtaaccttgagcagatcacagttcattattagatcatgagcaggagagagacactctaaagcttgggttactttatatgattcttgaatctggataaacctttactcggttataagttaatgaagtggagaggaaaatactttattaataagttatgactttttgaagttttcctaagttgaacaagcttacgtggtttttccaactcggtgttaaccacatagttatagatgtggttgtctagagaaatttcattgacaagatgtaatgttgaatactcaagtaagaattgcctctgatgatcaatgcactaatggattacttatatcctatgacttgcagtggcctttcaaacgttaaatgagaagacaactgtcttatctcctgaggtgcttctttctgctggtgttccctgctgcaggtatacccacatttcataatgcccttgtttgggatatttactctatgacattattttgagtatcaagtataatgtttaagagatatttctccaaagcagattggttcaaaaagcgggagaatttgttatcacattccctggagcttatcattcaggctttagccatggtaggtcatcatgcccatatcatagaatgagtagtggaacatattatctcccttggagaagttatctgtttggtcctatatgtattgtattgttcacatcttcgacttactattctacagtgaaggctacaaattttggctaactcaagaaatggaactccatccttgttttgtagagagctagctactttcatttggtgcccttatggttttatttagatctgttcacaactaaaatgccagcgcaataccatatagtgccaatcaaatatatttagaaggcggctatatttattttaaagtgctttaatacatatggagtagtcatattgttctgcacacttagtggaagatactgttttcaatttcaaataattaaaatttaaaagcactcaaattatcatttagatatgtccctcttaattccctgtttaaatcaaaacttgccgtcagaccatcatgaattgtgtgatcacatgtttagttgcctggatagataaccatgcagtgttactagctgttgatggcatttcatatgccctagatgcacaatatctcctttggctatggatccaactatccaaggtttctgtaatgagatgctcaaatttggtctgtttttgtaaaccatgcaatcagaatgtcacccttgcacaaaaaagaaaagaaaaacacaaccatgcatactagttgatatgagagaacacgaaaattaggttaggtttcatcatttcaatgctatagcattgttggttttctaacattatcacctttgttatgtactcccttcgttttgcaatatgtcatttcagaatggctatccactgagtaaatcaagagtggggagattaagtgcctgtggcttaccatactttacaacctcgcatgtacaacaagctgctaatctaggcacttaagatgaaaattaactacctttaatgacacgctggtgttttggaaacgactggccgtcaagcctactagttggcgcctcgactcaagcaatatgcataaatacagttttgccaaagaaactagtgcttcaacctagctattgcattggagattgaggttgtttggattgtgcgtaattggtttggacagagatgagatagtaacagtactggtgccctaaaaactgaaaactcattaatccccgaatatggaacttcattaatgaatattcttcatgaaaggaaacatgtctagagttgctcaattgaactctactgccttcgatgatcattttgtggtctttaatcctaaggcccgaacttgattgattgaac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gccggctctgcataacagccaatttttcaattgctttaggtccaactgaccttttgttgactaggatttactcccaagtcaattgtatcaaccggtcttctgttc</dnaseqindica>|
| + | PubMed PMID: 27345721; PubMed Central PMCID: PMC4991837. |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001073104.1 RefSeq:Os12g0279100]|
| + | </ref> |
| − | }}
| + | * <ref name="ref2"> |
| − | [[Category:Genes]] | + | Englbrecht CC, Schoof H, Böhm S. Conservation, diversification and expansion |
| − | [[Category:Japonica mRNA]]
| + | of C2H2 zinc finger proteins in the Arabidopsis thaliana genome. BMC Genomics. |
| − | [[Category:Oryza Sativa Japonica Group]] | + | 2004 Jul 5;5(1):39. PubMed PMID: 15236668; PubMed Central PMCID: PMC481060. |
| − | [[Category:Japonica Genes]] | + | </ref> |
| − | [[Category:Japonica Chromosome 12]]
| + | |
| − | [[Category:Chromosome 12]]
| + | </references> |
| | + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 12]] |
