|
|
| (2 intermediate revisions by 2 users not shown) |
| Line 1: |
Line 1: |
| − | {{JaponicaGene|
| + | The rice '''Os08g0517300''' was reported as '''''ZOS8-11''''' in 2007 <ref name="ref1" /> by researchers from the India. It is a member of C2H2 transcription factor gene family. |
| − | GeneName = Os08g0517300|
| |
| − | Description = Conserved hypothetical protein|
| |
| − | Version = NM_001068777.1 GI:115477291 GeneID:4346039|
| |
| − | Length = 5217 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os08g0517300, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os08g0517300''''' '''''<=>''''' '''''ZOS8-11''''' |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | |
| − | |
| + | ===Function=== |
| − | Chromosome = [[:category:Japonica Chromosome 8|Chromosome 8]]|
| + | * The Cys 2/His 2 zinc-finger proteins (ZFPs) constitute one of the largest transcription factor class regulatory protein families in eukaryotes. <ref name="ref1" /> <ref name="ref2" /> |
| − | AP = Chromosome 8:25765133..25770349|
| + | * The classical C2H2 zinc finger domain is involved in a wide range of functions and can bind to DNA, RNA and proteins. |
| − | CDS = 25765339..25765399,25766371..25766574,25766647..25766858,25766948..25766996,25767080..25767859<br>,25767943..25768011,25768154..25768201,25768300..25768374,25768485..25768559<br>,25768861..25768915,25769178..25769263,25770006..25770235|
| + | * Plant Q-type C2H2 zinc finger transcription factors play an important role in plant tolerance to various environmental stresses such as drought, cold, osmotic stress, wounding and mechanical loading. |
| − | GCID = <gbrowseImage1>
| + | * The ZFPs not only interact with DNA or chromatin but their interactions with RNA and other proteins are also well documented in lower as well as higher eukaryotes. |
| − | name=NC_008401:25765133..25770349
| + | |
| − | source=RiceChromosome08
| + | ==Labs working on this gene== |
| − | preset=GeneLocation
| + | * Interdisciplinary Centre for Plant Genomics and Department of Plant Molecular Biology, University of Delhi South Campus, Benito Juarez Road, New Delhi 110021, India |
| − | </gbrowseImage1>| | + | * Division of Genetics, Indian Agricultural Research Institute, New Delhi 110012, India |
| − | GSID = <gbrowseImage2>
| + | * Plant Disease Resistance Research Unit, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba 305-8602 Ibaraki, Japan |
| − | name=NC_008401:25765133..25770349
| + | |
| − | source=RiceChromosome08
| + | ==References== |
| − | preset=GeneLocation
| + | <references> |
| − | </gbrowseImage2>| | + | * <ref name="ref1"> |
| − | CDNA = <cdnaseq>atggccgaggtcgcccgcgcctcggcttccccacctcccgcctccgcctccaccggcggcgaccgcaagcgtggccgctcctccccgtcgctcccgccgccgccgcccgggccccctccgcaggtcccgcatgggagcaagaggcaccgcagggacgaggggggcgggggcgggttcgatcggcgccgcctcgggccgggagtagggtacgacaacccggacgataggaggtatggaaatgatcatggtggtgcaggaggaagaggtggatatggggatgagagaggtcagggtagaaacttcaatcgtgcaccagattggactgattctggacgtggtggatggaatgatggcccggctaactctcgtagggaaggcctcatgtcttacaagcagttcatgcaggagcttgaagatgatgtttcgcctgatgaagctcaacacagatatgaggagtacaagtcagagtacataacaactcagaagaaagcgtactttgaccttcataagaacgacgactggctgaaaaacaagtaccatccgactaaccttgaaattgtcatggaaagaaggaatgaacttgcacgaactgctgcaaatcaattcctccaagatttgcagaatgggagtttagacattggtccaggattaacaagttctgcaacaaacaaatctgggaatagcgtagatgatacggatgctaatggaaaaaaggggaaacttggaaagagccaagatgatttatattatgctgctcctaaggctcatccagttagctctgagccccgtcgaattagaattgacgttgagctagctcaagctctcatttgtaaacttgattcagagaagggtattgagaataatgttctgtcaggtagtgatcatgacagagcagagaaagataagtcacatggttcaatgggaccaatcgtaataatacggggttcatctgctgtaaagggtcttgagggtgctgagttgctggacactcttgttacctatttgtggcgtatccatggtgtggattactatgggatgtctgagacaaatgagcccaaaggtctaaggcatgtgaaagcagattcaaggacgtttaatggggctagctcaaatgcagctgaatgggagaagaaacttgattccttctggcaagataggattcaaggccaggatccaatggaaatattgaaagcaaaggataagattgatgcagctgctagtgaagtgctggatccacatgtgagaaaaataagggatgaaaagtatggatggaaatatggctgtggagctaagggctgcacaaaacttttccatgcccctgagtttgtccagaagcatctcaaactcaaacatgcggatttggttagggaactgacttcgaaagtgagagaaaatatttattttgataactatatgagtgatcccaaggcacctggtgggatgcctatcatgcagcaacctgctccaagggagaaagtcagacagcggccaccaatagagagtcggctgagagatgagcgtggcaatcgtaggtttgatagaaatgattcaccaacccatgatggatccagtgacaaccctgatgatgcatatgattcttatggtgatccggttatgcatggcgcctttcctccggatattcctgctcctccagtgttgatgcctgtgcctggtgctggcccactaggaccatttattcctgcaccacctgaagttgctatgcgtatgatgagagatcagggtggaccaccaccttttgagccaactggtggtccacgtcctaggagaccagggaggggtggtcttccaatgggtggcccatcaccaattcttgctgctcctttaccaccccctcatatgcatgatccacgcaaaatacgaagctatcaagaccttgatgctcctgaagatgaagtgactgttatggactaccgaagcttgtag</cdnaseq>|
| + | Xu H, Watanabe KA, Zhang L, Shen QJ. WRKY transcription factor genes in wild |
| − | AA = <aaseq>MAEVARASASPPPASASTGGDRKRGRSSPSLPPPPPGPPPQVPH GSKRHRRDEGGGGGFDRRRLGPGVGYDNPDDRRYGNDHGGAGGRGGYGDERGQGRNFN RAPDWTDSGRGGWNDGPANSRREGLMSYKQFMQELEDDVSPDEAQHRYEEYKSEYITT QKKAYFDLHKNDDWLKNKYHPTNLEIVMERRNELARTAANQFLQDLQNGSLDIGPGLT SSATNKSGNSVDDTDANGKKGKLGKSQDDLYYAAPKAHPVSSEPRRIRIDVELAQALI CKLDSEKGIENNVLSGSDHDRAEKDKSHGSMGPIVIIRGSSAVKGLEGAELLDTLVTY LWRIHGVDYYGMSETNEPKGLRHVKADSRTFNGASSNAAEWEKKLDSFWQDRIQGQDP MEILKAKDKIDAAASEVLDPHVRKIRDEKYGWKYGCGAKGCTKLFHAPEFVQKHLKLK HADLVRELTSKVRENIYFDNYMSDPKAPGGMPIMQQPAPREKVRQRPPIESRLRDERG NRRFDRNDSPTHDGSSDNPDDAYDSYGDPVMHGAFPPDIPAPPVLMPVPGAGPLGPFI PAPPEVAMRMMRDQGGPPPFEPTGGPRPRRPGRGGLPMGGPSPILAAPLPPPHMHDPR KIRSYQDLDAPEDEVTVMDYRSL</aaseq>|
| + | rice Oryza nivara. DNA Res. 2016 Aug;23(4):311-23. doi: 10.1093/dnares/dsw025. |
| − | DNA = <dnaseqindica>4951..5011#3776..3979#3492..3703#3354..3402#2491..3270#2339..2407#2149..2196#1976..2050#1791..1865#1435..1489#1087..1172#115..344#ctcttcgcatcgtcttcctccgccttccccgaatcccccgctccccgacaccacaccgcgagatcctcctcttccagatcaagcacccaccctacctagggtttccaccccgccatggccgaggtcgcccgcgcctcggcttccccacctcccgcctccgcctccaccggcggcgaccgcaagcgtggccgctcctccccgtcgctcccgccgccgccgcccgggccccctccgcaggtcccgcatgggagcaagaggcaccgcagggacgaggggggcgggggcgggttcgatcggcgccgcctcgggccgggagtagggtacgacaacccggacgataggaggtgagagggtttgtgatgctttggtggtgtggagttgggagggtttgagttgagtttgatagctggagagaaatagaagcttccgactcattttttttttgtttggactgttagtttatatggtcgattgatgtgcgaaaaccgtggtcgttagattggtttagccatgaaaaaaaatgttgagtgcgcaatgagcagttcgaatgcgtcccatttttttcattcggaaacagtaggttttggactaggaaattaatgactgaagagatttatgtttgttgcagttttccacaatttaggattttggccagaagacgtttttcatctgccacatgggtagtctgtgaatgtcttgtagtagctcgatgtttagctcctggttgaatcccagtaagaccataagagcctgagctattgaaggcactggctgtgcttattagtcaactgaaagtgttagtaatttgggtaggataccaaaaaggatcctgaatttgactcttatatatgaagtaaacatatatggtgaagtgctacatctcattttcttgtggatttatggtacctcttcgccttttcgtatggtatttatgtgctattttgagttgggagctgctctatgtgttataacatttagcaggaattaaggaaattaatggttctggttccttgtgatatttctttctgtgattatacactattttgagcatcactgcagcttttaatttgtttggttatctcctaggtatggaaatgatcatggtggtgcaggaggaagaggtggatatggggatgagagaggtcagggtagaaacttcaatcgtgcaccaggtacacattagtttatgcaagatgtcttgtatccactagttgtctggtttaagtcctacatgagttggaatattttagatttagttcattttccttgcttatataatactatcgttcctgtctttattcggagtataaattatgtcctgtccacttgaaatatgtagataaaatcataacatactgtgtacaaaaaatatttcatgtctacttgagttacttgtagattgaagtgtctgtcaatgacatatattttgtgtagattggactgattctggacgtggtggatggaatgatggcccggctaactctcgtaggtatgtatgcaattctggattgccttaatcctgtattttgattttttttctaattttttcaatcacgaattgtacctactgagatgagacatttatgagactggcacatgctgcgatgcctatactataaaaattacaaaacttctagttggtgcactgtcaaatttatgagtaactgaactagtcatacattcaagtggtgttctttgagtatacgcatacattggattcttgtgtaagcatcacaatgcaaaatttttgcatgtggaaagcaagcaaaatgactactggtactctacagggaaggcctcatgtcttacaagcagttcatgcaggagcttgaagatgatgtttcgcctgatgaagctcaacacaggtatgctatgtttgagatgatgaattttattccgtcctacagtgtaccttcaaatatggtggctcacacaatatgtaattgccattgctgctgtttgtgctaatcattagatatgaggagtacaagtcagagtacataacaactcagaagaaagcgtactttgaccttcataagaacgacgactggtaatacctttttcttttacatcctttccatgaataatctaatgactgatttttttttcaccaagttttactctttgcacttcttgcttttgttgcaggctgaaaaacaagtaccatccgactaaccttgaaattgtcatggaaaggttagctgtttatttagtatttagtgaattttcaagattatggtggactatcttctcatattcattgtgtctccaatgtccatatcatctccactttcttgtacgtttatatgataactacattatcttttgtttgaagcagaaggaatgaacttgcacgaactgctgcaaatcaattcctccaagatttgcagaatgggagtttagacatgtgagatgctcctcccccccctctccttctctctctctatctccctctctattttacttaattttattggccactctgtgcagtggtccaggattaacaagttctgcaacaaacaaatctgggaatagcgtagatgatacggatgctaatggaaaaaaggggaaacttggaaagagccaagatgatttatattatgctgctcctaaggctcatccagttagctctgagccccgtcgaattagaattgacgttgagctagctcaagctctcatttgtaaacttgattcagagaagggtattgagaataatgttctgtcaggtagtgatcatgacagagcagagaaagataagtcacatggttcaatgggaccaatcgtaataatacggggttcatctgctgtaaagggtcttgagggtgctgagttgctggacactcttgttacctatttgtggcgtatccatggtgtggattactatgggatgtctgagacaaatgagcccaaaggtctaaggcatgtgaaagcagattcaaggacgtttaatggggctagctcaaatgcagctgaatgggagaagaaacttgattccttctggcaagataggattcaaggccaggatccaatggaaatattgaaagcaaaggataagattgatgcagctgctagtgaagtgctggatccacatgtgagaaaaataagggatgaaaagtatggatggaaatatggctgtggagctaagggctgcacaaaacttttccatgcccctgagtttgtccagaagcatctcaaactcaaacatgcggatttggttagggaactgacttcgaaagtgagagaaaatatttattttgataactatatgaggtatgttttcttcattgtcattcttttggctgaactaatttttaacattccaaagaagattatgctgtacatattgcatgcagtgatcccaaggcacctggtgggatgcctatcatgcagcaacctgctccagtaagcctcactacctagtttttagtcagttgcaaattggtgactgtttaagttccttactgtcttgtttgtattggccaatttttcagagggagaaagtcagacagcggccaccaatagagagtcggctgagagatgagcgtggcaatcgtaggtttgatagaaatgattcaccaacccatgatggatccagtgacaaccctgatgatgcatatgattcttatggtgatccggttatgcatggcgcctttcctccggatattcctgctcctccagtgttgatgcctgtgcctggtgctgggtaagtctgcaacttgtgcttagttttcacaataatacacttattgttgattcgttgtcattttcatctcagcccactaggaccatttattcctgcaccacctgaagttgctatgcgtatgatgagagatcagggtggaccaccaccttttgagccaactggtggtccacgtcctaggagaccagggaggggtggtcttccaatgggtggcccatcaccaattcttgctgctcctttaccaccccctcatatgcatgatccacgcaaaatacgaaggttagtacttacatgtttgtctcctttcccttgtgttccctattctgtcctcaccatgcgacataagcaatttatttcaatatcctgaaacatcgttaacaaaataagtatgctgatagtgaaaaaactgaacactgattatttctctggagttctgctggacatcctttgtcgtaatttaccgtgatatgcaaatatttctttagagaaaaggctgcaatgacctggcttgtattgaaagccaaaaggttgtctgctggggattccagctttacatgtgtatcacaggaaacctaaactgattacaccctgatcaagtaggtatcgcccagagccaagcaaaaactgaggtcttaaacaaccagactacagtactagggatataacaactcccaaaaacagaatcccagactactgtagcgaagctggcacggcatttgaccatgatatgcaaatatctcaagttcactacgaaatttggatgatccgcttgcaaatttgagctcattagcagaacacgcgattgatttggatttcatatacctggaacaaacatggccatgtcacaattcacaaaggaccttacatacagtttgaagcatggtaaaacatgctcctggtattgtttgtagagtctcttggctaggaaatttttaaaaaacttattaggataggatgtcaagttggtgtttccaatatagtctgatttgtgcttgctaaagcatttgcaagatgtacaatacgttatcatggagattgtttgtcagatttaaggtattgctgttccctgctgcatgtaggtttgcgaactttatgttctaaccaaaatttgtcccctatacatgtctaccaagttgtatttgaagttagcactggcacatcatatctgaacttcagaatactcatttgctgtttattttagatacttattttttgctacaatttttcacatgtgttaaccttgcttccagctatcaagaccttgatgctcctgaagatgaagtgactgttatggactaccgaagcttgtagaggaattggagacacgatccttttttgtatctgggaaactgtaggtaatattacagaccgcaacaagacggcattcatttctagatttttttgtgaacgcaaacaggtaggactttgaggttcggagctctgttactgtctgtaaaatggatcacaggaaaacctgggacaaggagcatattctcattcaccaatcaccactcacc</dnaseqindica>|
| + | PubMed PMID: 27345721; PubMed Central PMCID: PMC4991837. |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001068777.1 RefSeq:Os08g0517300]|
| + | </ref> |
| − | }}
| + | * <ref name="ref2"> |
| − | [[Category:Genes]] | + | Englbrecht CC, Schoof H, Böhm S. Conservation, diversification and expansion |
| − | [[Category:Japonica mRNA]]
| + | of C2H2 zinc finger proteins in the Arabidopsis thaliana genome. BMC Genomics. |
| − | [[Category:Oryza Sativa Japonica Group]] | + | 2004 Jul 5;5(1):39. PubMed PMID: 15236668; PubMed Central PMCID: PMC481060. |
| − | [[Category:Japonica Genes]] | + | </ref> |
| − | [[Category:Japonica Chromosome 8]]
| + | |
| − | [[Category:Chromosome 8]]
| + | </references> |
| | + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 8]] |
