|
|
| (2 intermediate revisions by 2 users not shown) |
| Line 1: |
Line 1: |
| − | {{JaponicaGene|
| + | The rice '''Os08g0485600''' was reported as '''''ZOS8-08''''' in 2007 <ref name="ref1" /> by researchers from the India. It is a member of C2H2 transcription factor gene family. |
| − | GeneName = Os08g0485600|
| |
| − | Description = Methyl-CpG binding domain containing protein|
| |
| − | Version = NM_001068624.1 GI:115476985 GeneID:4345879|
| |
| − | Length = 8244 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os08g0485600, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os08g0485600''''' '''''<=>''''' '''''ZOS8-08''''' |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | |
| − | |
| + | ===Function=== |
| − | Chromosome = [[:category:Japonica Chromosome 8|Chromosome 8]]|
| + | * The Cys 2/His 2 zinc-finger proteins (ZFPs) constitute one of the largest transcription factor class regulatory protein families in eukaryotes. <ref name="ref1" /> <ref name="ref2" /> |
| − | AP = Chromosome 8:24090878..24099121|
| + | * The classical C2H2 zinc finger domain is involved in a wide range of functions and can bind to DNA, RNA and proteins. |
| − | CDS = 24091029..24091693,24093273..24093414,24093489..24094733,24095942..24096076|
| + | * Plant Q-type C2H2 zinc finger transcription factors play an important role in plant tolerance to various environmental stresses such as drought, cold, osmotic stress, wounding and mechanical loading. |
| − | GCID = <gbrowseImage1>
| + | * The ZFPs not only interact with DNA or chromatin but their interactions with RNA and other proteins are also well documented in lower as well as higher eukaryotes. |
| − | name=NC_008401:24090878..24099121
| + | |
| − | source=RiceChromosome08
| + | ==Labs working on this gene== |
| − | preset=GeneLocation
| + | * Interdisciplinary Centre for Plant Genomics and Department of Plant Molecular Biology, University of Delhi South Campus, Benito Juarez Road, New Delhi 110021, India |
| − | </gbrowseImage1>|
| + | * Division of Genetics, Indian Agricultural Research Institute, New Delhi 110012, India |
| − | GSID = <gbrowseImage2>
| + | * Plant Disease Resistance Research Unit, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba 305-8602 Ibaraki, Japan |
| − | name=NC_008401:24090878..24099121
| + | |
| − | source=RiceChromosome08
| + | ==References== |
| − | preset=GeneLocation
| + | <references> |
| − | </gbrowseImage2>| | + | * <ref name="ref1"> |
| − | CDNA = <cdnaseq>atggagacggaggtgttccccgtggttgacctccgcgtgctcacgcagtccgatctggacgagctcgccgccgcctccgcccacgccgtggacccgcggagcagctgccccgaccgcgccgtcttcaacgagagcgccggctcgcgtaagcagaccttctcccgcgtccgcttcgtccccgccgccgccgccgccgctgccgccgcctccgcctccgccgccgccgccgccaagctgcccaggggcaacgacaaggaggacagcttcatcgcctaccacctccgccgcctcttcgcgcccgacgacccctccctcatcgagaacccctcctttccccaaacccaaaccctagctcggtcgccgtctcccgaccccgaccagttgaccaccaactccaggggggtctccgttgatctggtgagcctctcacggcttgccgacccgtacgacgcggagctcgggaagcggactgccaggatgaccacggaggaggagctcatgggcttcatctctagcctcgcgggtcagtgggtgaaccagaggatgcggaggaagttagttgatgcgtccttcttcggggatcacctccccagcgggtggaggctgcagcttgggatcgagcggaaggaccgcaaggcctgggtgaactgcttcagttatgtgagccccaagggacagagttttgctacttgccaagaggtttctgcatacctcatgtcacttcttgggtatccggagttcaaaacggataatattgagtatggtagcacacaacaacatggcttgtgtgctgacgatggtgttaatgttttaggtgttcaacaccaaattggtacaagtatggacagtcaaagtaatttgccagttgcttctgctactttttatagtcattcaagagatcaagacgaaacggttgcagatgatataaattcttatgaatgtcaacaatgcaatttaacttttcatggtcagagtgcctatgcgcatcacctgatcacttttcacaaagtgagttctaagaggcgtaagagtaacaaggttagcaaatttggtgagccagtgataggcaaagatgggaaatttgaatgcccagtatgtaacaagacgtttgaggaacagtcacggtactttggtcacattggatcccatgcaaagtatcaggggctgactcctgaagcattcctacaaaccttttcaggaaaggttggtaacaattcttttgcaggtttgtcatctagccttcaagtattggtcggatcaccacaactgaatgagaagactactgcttgtgaagcacgatcgcagcatcacgattgttcaactaaacatggaggcaatagtacaagaggtatagacctttttaactcaaatcatcctgctaacttcaatgggcataatcaatcttggtgtagatctgatgaaattcctcccaccacagaagctcaaagcacatggacttatagaaataatgagatgaactgtgctgatagaactgttccgagaacagtacctcagcccaatgatcacgaggattgcagggttagtggctttgctgaagcaactaattttaatgatcaagcaggaagacaccaaggttttagacctttctcctttggaactaccaaccattgtcaaggccagataattgatcatgcagtagctgcttccaagcatgctgaggttaataatagtatgaaatcaagagatgtcaacctcaattcacgcctgaacacaatatcctttcctattgcaactgcaaacaatgaaacatcgactgcccttaatgacgtgaatcggtcatgcattactggaaaaggttttagtggaagtttcagtaacaatgatggtgctgcatctatcgtgttgcccagttctggattaaacaataaaatttctagctccctcggtgtagctgacagatcatctattgctgccagatccttcaatgctggttatgtttatgaaaatggcgcttctgaagctaacaatattggcaacaaaaacaataccatggtgtatcaaacaagtttggccatgcgtccactctctcctggcaaacaaagcagcggcgttgcttcgagaaggacagccgctgtggtgtccgagcggcatggaggccaagttgtgagacacccacggactgcttcatcagtttacatgcctgagcaaggtcctggatggttgtga</cdnaseq>|
| + | Xu H, Watanabe KA, Zhang L, Shen QJ. WRKY transcription factor genes in wild |
| − | AA = <aaseq>METEVFPVVDLRVLTQSDLDELAAASAHAVDPRSSCPDRAVFNE SAGSRKQTFSRVRFVPAAAAAAAAASASAAAAAKLPRGNDKEDSFIAYHLRRLFAPDD PSLIENPSFPQTQTLARSPSPDPDQLTTNSRGVSVDLVSLSRLADPYDAELGKRTARM TTEEELMGFISSLAGQWVNQRMRRKLVDASFFGDHLPSGWRLQLGIERKDRKAWVNCF SYVSPKGQSFATCQEVSAYLMSLLGYPEFKTDNIEYGSTQQHGLCADDGVNVLGVQHQ IGTSMDSQSNLPVASATFYSHSRDQDETVADDINSYECQQCNLTFHGQSAYAHHLITF HKVSSKRRKSNKVSKFGEPVIGKDGKFECPVCNKTFEEQSRYFGHIGSHAKYQGLTPE AFLQTFSGKVGNNSFAGLSSSLQVLVGSPQLNEKTTACEARSQHHDCSTKHGGNSTRG IDLFNSNHPANFNGHNQSWCRSDEIPPTTEAQSTWTYRNNEMNCADRTVPRTVPQPND HEDCRVSGFAEATNFNDQAGRHQGFRPFSFGTTNHCQGQIIDHAVAASKHAEVNNSMK SRDVNLNSRLNTISFPIATANNETSTALNDVNRSCITGKGFSGSFSNNDGAASIVLPS SGLNNKISSSLGVADRSSIAARSFNAGYVYENGASEANNIGNKNNTMVYQTSLAMRPL SPGKQSSGVASRRTAAVVSERHGGQVVRHPRTASSVYMPEQGPGWL</aaseq>|
| + | rice Oryza nivara. DNA Res. 2016 Aug;23(4):311-23. doi: 10.1093/dnares/dsw025. |
| − | DNA = <dnaseqindica>152..816#2396..2537#2612..3856#5065..5199#tggagccccaactacgccgccagcccgccatctcatcccccggcgagcgacacggtcgcatcccacctgagctccgaccgccgcagcggcggtcgcctcgccggagcagaagccgcgcgtgggggggaaggcggaggaggggaggggttcaatggagacggaggtgttccccgtggttgacctccgcgtgctcacgcagtccgatctggacgagctcgccgccgcctccgcccacgccgtggacccgcggagcagctgccccgaccgcgccgtcttcaacgagagcgccggctcgcgtaagcagaccttctcccgcgtccgcttcgtccccgccgccgccgccgccgctgccgccgcctccgcctccgccgccgccgccgccaagctgcccaggggcaacgacaaggaggacagcttcatcgcctaccacctccgccgcctcttcgcgcccgacgacccctccctcatcgagaacccctcctttccccaaacccaaaccctagctcggtcgccgtctcccgaccccgaccagttgaccaccaactccaggggggtctccgttgatctggtgagcctctcacggcttgccgacccgtacgacgcggagctcgggaagcggactgccaggatgaccacggaggaggagctcatgggcttcatctctagcctcgcgggtcagtgggtgaaccagaggatgcggaggaagttagttgatgcgtccttcttcggggatcacctccccagcgggtggaggctgcagcttgggatcgagcggaaggaccgcaaggcctgggtgaactgcttcagttatgtgaggtgagcctcatcatcctttccttgcaaatgctgcaatgctatgggatccgttgttggtaactggaatgggggttataacttgcaataagctagagggctggatgcttgctatgatgtttagagatgcggtaatgtgtgactatagatgcaaaggatgtgtggtggatttggtttgtgaagattgttttatactcttttagtgtagtcaactgttgctaatcaatcatgcacaagtttatcagatcagttcttggtagttttgaatgattgatttttttttcaacatggccttcttgctgtcattatgtggattgcctattttccatggaagaataaatcttatttgttaacaatattattatgcaaacatacaataactgaatacccccaggacgagctgtttcatgacgagggggatgctatggctggacattatggtatagtatatatagtagtggtgtcggtatgacaaggcctcaggattagcatgtgctgcagcaattggagaatcatagtagacaaatagatattctactccttatttctccattagagtttcctagttttgtcattggagtcctagtagtattagatactagtttgtttcctttgccttatctagaggcacctcaatatacaaaggtagcctagtactggattatgccttgagcaataagaaatatctaaaggggattgacccaaaagcccagtcatttcaatgacatactagttaaatgataatgctgaataatctggggggcaaagacaagacttttgcctaccatagtataagagcagcgtggagcggtattgctttaagataatgagttttgttttattcctttgatatttgcttttccgcacttcatttgatctgtagttttaaggcatgcatgttatgcgattgcagcagcattatttagcaatggcttgattgatgcttactactacctccgtttcaggttataagactttctagaatctagaaagtcttataatatgaaacagaggaagtatatgataggttaaacataaagatagatttgtatggcgcatatcatatctcaagtatataacataacacatgtatgtgtaaatttgcttctcctgccgagttctcactgatacacaggtcctaatccaacctgtcaatgagaaccagtggataaagtgaattaaggacatggcatggtgtctaaaatgtctaaaataaacagtaattttcatttgctttatttaactgcaatgcctatttgaagtagtgcctagagcacatgagcatttcaatcattatctcgaatgttcctcagaactcaggtgttccaccatatatgctcagatttatcatctgtcgtagatgaataattttgttgtaataacagtaaagatcacttctcatcactataagttcgaaagtatctgttaagataacaaattcctatttatctgcttcacctttatctatcatgtgtgctactcatcagcgaacatatgttgtggatggctgcatcatttcagcgcaataattttgttcgtcacatttttcccctgtactaaatgggcatgttgtactttccagccccaagggacagagttttgctacttgccaagaggtttctgcatacctcatgtcacttcttgggtatccggagttcaaaacggataatattgagtatggtagcacacaacaacatggcttgtgtgctgacgatggtgttaatgtaagttgaaagtgtatgtcactttatcttgtgaacttgagtttgtctagtttaatttttggagtttgtggcaggttttaggtgttcaacaccaaattggtacaagtatggacagtcaaagtaatttgccagttgcttctgctactttttatagtcattcaagagatcaagacgaaacggttgcagatgatataaattcttatgaatgtcaacaatgcaatttaacttttcatggtcagagtgcctatgcgcatcacctgatcacttttcacaaagtgagttctaagaggcgtaagagtaacaaggttagcaaatttggtgagccagtgataggcaaagatgggaaatttgaatgcccagtatgtaacaagacgtttgaggaacagtcacggtactttggtcacattggatcccatgcaaagtatcaggggctgactcctgaagcattcctacaaaccttttcaggaaaggttggtaacaattcttttgcaggtttgtcatctagccttcaagtattggtcggatcaccacaactgaatgagaagactactgcttgtgaagcacgatcgcagcatcacgattgttcaactaaacatggaggcaatagtacaagaggtatagacctttttaactcaaatcatcctgctaacttcaatgggcataatcaatcttggtgtagatctgatgaaattcctcccaccacagaagctcaaagcacatggacttatagaaataatgagatgaactgtgctgatagaactgttccgagaacagtacctcagcccaatgatcacgaggattgcagggttagtggctttgctgaagcaactaattttaatgatcaagcaggaagacaccaaggttttagacctttctcctttggaactaccaaccattgtcaaggccagataattgatcatgcagtagctgcttccaagcatgctgaggttaataatagtatgaaatcaagagatgtcaacctcaattcacgcctgaacacaatatcctttcctattgcaactgcaaacaatgaaacatcgactgcccttaatgacgtgaatcggtcatgcattactggaaaaggttttagtggaagtttcagtaacaatgatggtgctgcatctatcgtgttgcccagttctggattaaacaataaaatttctagctccctcggtgtagctgacagatcatctattgctgccagatccttcaatgctggttatgtttatgaaaatggcgcttctgaagctaacaatattggcaacaaaaacaataccatggtgtatcaaacaagtttggccatgcgtccactctctcctgtaagtaacatggattgcttcacgttttgttcagtgcatttaaaaatagcaattgacatctattgatgcttataataataacatggatagcatagaaaacaaaacaagtaactaagctagattttctgttgatgcttataataatatcttgactggcaatgtcactgaaaggagtctacccagtgtaattgcaactccagtcacatagggcctaatatttcaagccataattcacttcctaaatcaagcacactagcgaccagtaacttaagcaaggggagtgatgtcaactggaaagttgttttaaaaatcatattaatccatttgttaaaaaaataactaatactccctcgtttaaggttataagacgttttgactttggtcgaaatcaaactactctaagtttttctaagtttgactaactctatagacaaaagtagtagtaatatttacaacactagcatagtttcattaaacctataattgaataaattttcataatatatttatgttgggttaaatacattactacttttttctacaaaattagtcaaacttagagtagtttgactttgaccaaagtcaaaaatgtcttactacctgaaacggagggagtacttaattaatcttgcgctagccatcgcttcgttttgtgcgcactcccgacctcagccctgtagcggctcgacgctagcattgtccatatgaggtaaataatagggaaaattccatctataccacaaagattttaccagtaccaaataataccaccagattttttctccttgttgtttaaaaaaaaaggatttttcctccttccaaaaataccacaaacttcacggagaaccgacagagtaagtagatgaaactgccctcacatctctcgttctctcatctctttaagtgatagggttggcaatctctgctcagcgatagggattgaatagtttcattaaacatataataattgaataatctctgcatcgcgtctgggacgaaggagatcgccactggtctggcccgcgtggaggcacttttctgcttatgccgccgcggtgttgtgtccgggcaggagaccccactggtccggcactccggctccggcggtttggccccgtccggccgtcccccgtacggaggcacttttatgctccgtcgctggtgtttgcgcttcctccgattttctaacccattgccgtgcgaagcagggcaaacaaagcagcggcgttgcttcgagaaggacagccgctgtggtgtccgagcggcatggaggccaagttgtgagacacccacggactgcttcatcagtttacatgcctgagcaaggtcctggatggttgtgagctccaccagctaatcaccaaaggcagcttatgcatcatgcagctggattggagaactcctaaagctgaaggccacgatgggattggagaactcctaaatcttgttcacacagggtacctcagtactcttcttttcaaacacaggtaacggagacaaattagtttgtatgagattgggtaacgtctgttgaaatatgtggtattcttaaaagaaacgttgttgcactgtggtattgagtggagatgaaagaatcttgtggtattatttggttggtcaaatctttgtggtatagttggaattttcatataataatatatttttccttggtcaaatcttcgataacattttactttgcccgatgttttcccatgatatccctcttagtcacatcccaccatttcttttgggaattgctaactagcagcctgctgtttttttgtctttgtcagccatttttttagccattggatctcccttcaagattcgtgcaccctcaacgtgatccagtccaagcaatcgcatgttgccaaaaatgcccagcccaagcagcagtgggaccctcacctcgcatcacattttttcatcccgacacgcgcccatctgctacagtttgaaaaacagtaatctcctctttcctttttttctccattgcgcacgagagaaagagagagagagaagctgtcagtgagagtgggggaaatctcggtgagagggaaggagagaaggtggcggcgatgcagcagcgggagcgctatgccgtcatcttctccggcagggggagccctcgcgctgccgttgccgtcttctgtggcggagggagcccttgggcttggcagagagcgtgggggaggagggtcgtcgtgttttgtccgagagacacgttttgttgtccccacggcggtcgtcgacgaggcttccgtggagccattcgtgtgcagcggcgatgcgcatatggtactacctgcaccggtggttgagctgaccaagtattctcaaccaaatctcatcatgaatcccaggagttctgaaccggaggcaagcaacaaagagaccacaacgattcacaaggtgagctagtttattttctgcaacaaggaaaccacatggtttctgatttttgtgtgttgattcgaatgaggagtggtggtgtactatctcatttttttttcttagacactgtgctttcagatctgagacaagggtgatttgtggaatgaacaaagtcatatgtctttcttagacaccatgcttttcagatctgagcaagggtcatttttgtggaatgaacaaagcgatatgtcttcttagacattttgtttgcagatgtaagcaagggtgatttggcatgaacaaccgtgtgcacttttctgattttgtgatgtcagtttaacacttagattttccagttttcagaaatgcctactgttttgtgcctgttgtggaatttgtggaaatatgcagtcatgttttgtttgctagttgagttaggatttgtctgaagaatactgtacaacaacataactgcagaagcgaaatatgtatgccaaatttcaatttcaggcaccaccagacaatttgtatgcactctgggcttatctgaatgttgtaggggtttatcttaatgttgtagattttttttcacacaatggtctgaatactgtagataagcagaactagtagtagcagaatgcttgaatcgtatgtaaatatgaggcgcatctggggctactactattgttactcagacttaaaatggatgtatggaaacaagttcaagcctgcatttgtctattcaacttgttacaaaatgatcatgtcagtagttttagtgtgaaatttgaaatttgaaattcatgttgctgaatttttctgaaccctacttatgtaattctgaactttgctgtcaaaggaatgcatggcgtgctgtggcagttttggtcccttttttttgtttgttctagattttccagtttttgtaaattttgtcaaaagaattgtaatttattatctctctgtgtttgtccaacctgaaacacaatttgttagttttgtaataacaaaaacttttacaactatattttgagatttgttagttttgtaattacaaaaacttttacaactatattttgtaaatttgtcagttttgtaaattttgtcaaaaaaatgtaatttattatctctatcctttgtccaacctgaaacacaatttgttattttctttaacttctcaaaataagttatttcttcatatttgtattttgtttttgtcagttttttttaaaacttctcaaaataagtggttttgtcatatttgtatttttgtcttttgtttttgtcagttttttaacttctcaaaataagtggttttgtcatatttgtattttgtttttgtcagttttttaaacttctcaaaataagtggttttgttatttttgtatcttgtttttgtcagttttttaaattaatgcatgtgttcctcaggtctgttgtagatctcctccaccgttcatccttagcccgacgccgatgccactgccacctgccattccctcctcaccaaggtaaaagcctggctgacttccatatagctctgagctagtaacagtacttccaaaagggccataaaatcaagctacaatgtttcagacttccaactgctattaacagtacttacttccaaagtgccattacagtcttccagcagctaccatgtttcaaaataaagagctcagtacaaattcatctgactttttttttaactactatactgtgtcaggttactgtccgttgtaaaaaattgtaatttattatctctctgctttgtccaacccgaaacataatttgtatgtttggttttatcaattttgttagttttgtaaaccagctgtagaaaagattgatagaaatattgcatgcttcataccatgtttcatatttgtcagaaatagtttatgaatgatcgtgctctttgttatctcctacttttgtcagttttgtaaaagaattttgtaatttattatctctctgtgtttgtccaacctgaa</dnaseqindica>|
| + | PubMed PMID: 27345721; PubMed Central PMCID: PMC4991837. |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001068624.1 RefSeq:Os08g0485600]|
| + | </ref> |
| − | }}
| + | * <ref name="ref2"> |
| − | [[Category:Genes]] | + | Englbrecht CC, Schoof H, Böhm S. Conservation, diversification and expansion |
| − | [[Category:Japonica mRNA]]
| + | of C2H2 zinc finger proteins in the Arabidopsis thaliana genome. BMC Genomics. |
| − | [[Category:Oryza Sativa Japonica Group]] | + | 2004 Jul 5;5(1):39. PubMed PMID: 15236668; PubMed Central PMCID: PMC481060. |
| − | [[Category:Japonica Genes]] | + | </ref> |
| − | [[Category:Japonica Chromosome 8]]
| + | |
| − | [[Category:Chromosome 8]]
| + | </references> |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 8]] |
