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| − | Please input one-sentence summary here.
| + | The rice '''Os05g0279400''' was reported as '''''ZOS5-06''''' in 2007 <ref name="ref1" /> by researchers from the India. It is a member of C2H2 transcription factor gene family. |
| | | | |
| | ==Annotated Information== | | ==Annotated Information== |
| | + | ===Gene Symbol=== |
| | + | *'''''Os05g0279400''''' '''''<=>''''' '''''ZOS5-06''''' |
| | + | |
| | ===Function=== | | ===Function=== |
| − | Please input function information here.
| + | * The Cys 2/His 2 zinc-finger proteins (ZFPs) constitute one of the largest transcription factor class regulatory protein families in eukaryotes. <ref name="ref1" /> <ref name="ref2" /> |
| − | | + | * The classical C2H2 zinc finger domain is involved in a wide range of functions and can bind to DNA, RNA and proteins. |
| − | ===Expression===
| + | * Plant Q-type C2H2 zinc finger transcription factors play an important role in plant tolerance to various environmental stresses such as drought, cold, osmotic stress, wounding and mechanical loading. |
| − | Please input expression information here.
| + | * The ZFPs not only interact with DNA or chromatin but their interactions with RNA and other proteins are also well documented in lower as well as higher eukaryotes. |
| − | | |
| − | ===Evolution===
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| − | Please input evolution information here.
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| − | | |
| − | You can also add sub-section(s) at will.
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| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | Please input related labs here.
| + | * Interdisciplinary Centre for Plant Genomics and Department of Plant Molecular Biology, University of Delhi South Campus, Benito Juarez Road, New Delhi 110021, India |
| | + | * Division of Genetics, Indian Agricultural Research Institute, New Delhi 110012, India |
| | + | * Plant Disease Resistance Research Unit, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba 305-8602 Ibaraki, Japan |
| | | | |
| | ==References== | | ==References== |
| − | Please input cited references here.
| + | <references> |
| | + | * <ref name="ref1"> |
| | + | Xu H, Watanabe KA, Zhang L, Shen QJ. WRKY transcription factor genes in wild |
| | + | rice Oryza nivara. DNA Res. 2016 Aug;23(4):311-23. doi: 10.1093/dnares/dsw025. |
| | + | PubMed PMID: 27345721; PubMed Central PMCID: PMC4991837. |
| | + | </ref> |
| | + | * <ref name="ref2"> |
| | + | Englbrecht CC, Schoof H, Böhm S. Conservation, diversification and expansion |
| | + | of C2H2 zinc finger proteins in the Arabidopsis thaliana genome. BMC Genomics. |
| | + | 2004 Jul 5;5(1):39. PubMed PMID: 15236668; PubMed Central PMCID: PMC481060. |
| | + | </ref> |
| | + | |
| | + | </references> |
| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 5]] |
| − | GeneName = Os05g0279400|
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| − | Description = Zinc finger, RING-type domain containing protein|
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| − | Version = NM_001061619.1 GI:115462968 GeneID:4338285|
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| − | Length = 5819 bp|
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| − | Definition = Oryza sativa Japonica Group Os05g0279400, complete gene.|
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| − | Source = Oryza sativa Japonica Group
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| − | | |
| − | ORGANISM Oryza sativa Japonica Group
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| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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| − | clade; Ehrhartoideae; Oryzeae; Oryza.
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| − | |
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| − | Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
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| − | AP = Chromosome 5:11671617..11677435|
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| − | CDS = 11671825..11671992,11672796..11673104,11674389..11674597,11674684..11674732,11674848..11674935<br>,11675032..11675096,11675222..11676895|
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| − | GCID = <gbrowseImage1>
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| − | name=NC_008398:11671617..11677435
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| − | source=RiceChromosome05
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| − | preset=GeneLocation
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| − | </gbrowseImage1>|
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| − | GSID = <gbrowseImage2>
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| − | name=NC_008398:11671617..11677435
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| − | source=RiceChromosome05
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| − | preset=GeneLocation
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| − | </gbrowseImage2>|
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| − | CDNA = <cdnaseq>atggacgacagctgcgcggtgtgcgcggacgcgctggagtgggtggcctacggggcctgcggccaccgcgaggtttgctcgacctgcgtcgttcgcctccgcttcgtgatgggcgacaagcactgctgcatctgcaagaccgagtgctcctccgtattcgtcaccaaggctatgggcgattacacaaaagtgataaatgatttcaatattttcccccctgtggcaactgagggaaaggtgggggagtactggtaccatgaggatagccaggcattttttgacgatgctgagcactacaagatgatacgagcaatgtgtcggctttcttgtagtgtgtgtgacaaagctgaagatcaggctggccaggcagcacaagtaaggcgcaaaagcaagttcaggagcattgaacagctgaagggacatttgttccatcaacataggttatacatgtgcagtctttgcttggaggggagaaaggtgttcatttgtgaacagaagctttatacaaggacacagttaaatcagcatgtaaaaactggtgactctgaggtggatggctctgaggttgagcgcagtggttttgcaggacatcctatgtgcgagttctgcagaagttcattttatggagataacgagctttacacacatatgtcccgagaacactattcatgtcacatatgtcaaaggcaacatcctgggcagtatgattatttccggaattatgatgacttggagttgcatttccgtaaagatcatttcctctgtgaagatgaagcatgtttggcgaagaagtttgtagtcttccagagcgaagcagagctcaagagacataatgctatggagcatggtgggcggatgtctcgtgctcagaggaatgccgcacttcagataccaaccagctttatatatcgaagaaacgagcaagatgaaaggcgtggtagaggtaggggacggaattctcaccgtgatggatctgaccgggataccccctctatgcaaaatggcagtgcaattataggcaacggttttccaagtcgagttgataatgttacagggtctgtgagtgtcagttctagttctgggcgaggagaatctggccaaagctcaggcaatggacgtgtgtttgaacacttgtcctttcctcctcttcaagaccaggatattcctgatgcaaggatggactctgctcctgatgaaacctcattcccttccctctcagagcagcaaaccagatatgctcatgctcttagtcagagttcccttgctgccaagcttggggatgagttattattccctccactacctgggtcaagtagcaacaggggttctacttcaactcaacaggggctacaaagtctagcgaagaacacacttgcatcaaggcttcagcagcgtagcaagggcagtgtgaaagtacttcattctgcccggcctcgcccatctgaaaatcctgaatcagtccctcctgtttctagttccccacagatgtggcctacacctgatcaggggctgcttcattctagttcttcccagcttcgaattgtaagagaaaatgggattatgtcatctgccgactcggcatggaatcctggaggtggagcttcaaacaggatgaagcactctgtttctactcctaatcttatgtctggtgggtcctctgttcaggcactaagtacatctaacggtggcaataaaaaacaacagccaccacaaagcagccaaacattgcctgctgctgatgatgttcgtgctgccaataagaccctggttgaaagaatgcgcagtgctttaggcatggatgaagataggtactctgcatttaaagaaatcgctggtgaataccgtcaaggcatcattggtacttcagaatatctttcatatgttgagcaatttggtctgtcacaccttgtgcctgaaatggctaggctgttacctgatcctcagaagcagaaagaacttgctgatgcctatcacaccaatatacgcttcagaagcctccaagagaacagtgatggtttaaccattacctcaaaggagggtggccgcaagaaaaagggcaagggaaaatctcatgatgttacagaaactagtgctgctcctgctaaggatatgaaggattcactagcagatagcttcctggacactgtaaggaagcttcagttaaacaagactcaggaaggagaggctgaggtgctgtcaagggatgggtatcgatcttccaagggaaaggcccaactaataactggaggttcatcatctagtacaccatgtctagatggtgatcatggtgccatttcaatggcttcttgtgccaaagatgatgtaggcaagggaggaggtagcagcaacagcaacatcaacaaacaatcaaagaagacatcaaagtttctcagagcccgattaggtgataactccttagctacacttgatttgagtcgtcctaccatgagccctgaacgaccagaaagggaatcgcaaggcccacaggtagggttgcctatgcgaggtgtttggaaaaatggagggggccagaagctctttacgggcaatggaaggaagtaa</cdnaseq>|
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| − | AA = <aaseq>MDDSCAVCADALEWVAYGACGHREVCSTCVVRLRFVMGDKHCCI CKTECSSVFVTKAMGDYTKVINDFNIFPPVATEGKVGEYWYHEDSQAFFDDAEHYKMI RAMCRLSCSVCDKAEDQAGQAAQVRRKSKFRSIEQLKGHLFHQHRLYMCSLCLEGRKV FICEQKLYTRTQLNQHVKTGDSEVDGSEVERSGFAGHPMCEFCRSSFYGDNELYTHMS REHYSCHICQRQHPGQYDYFRNYDDLELHFRKDHFLCEDEACLAKKFVVFQSEAELKR HNAMEHGGRMSRAQRNAALQIPTSFIYRRNEQDERRGRGRGRNSHRDGSDRDTPSMQN GSAIIGNGFPSRVDNVTGSVSVSSSSGRGESGQSSGNGRVFEHLSFPPLQDQDIPDAR MDSAPDETSFPSLSEQQTRYAHALSQSSLAAKLGDELLFPPLPGSSSNRGSTSTQQGL QSLAKNTLASRLQQRSKGSVKVLHSARPRPSENPESVPPVSSSPQMWPTPDQGLLHSS SSQLRIVRENGIMSSADSAWNPGGGASNRMKHSVSTPNLMSGGSSVQALSTSNGGNKK QQPPQSSQTLPAADDVRAANKTLVERMRSALGMDEDRYSAFKEIAGEYRQGIIGTSEY LSYVEQFGLSHLVPEMARLLPDPQKQKELADAYHTNIRFRSLQENSDGLTITSKEGGR KKKGKGKSHDVTETSAAPAKDMKDSLADSFLDTVRKLQLNKTQEGEAEVLSRDGYRSS KGKAQLITGGSSSSTPCLDGDHGAISMASCAKDDVGKGGGSSNSNINKQSKKTSKFLR ARLGDNSLATLDLSRPTMSPERPERESQGPQVGLPMRGVWKNGGGQKLFTGNGRK</aaseq>|
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| − | DNA = <dnaseqindica>209..376#1180..1488#2773..2981#3068..3116#3232..3319#3416..3480#3606..5279#gccgtgcgggccgccaacacaaggacgcgacgacaagggtggggggataagcggagagagagagaaaaaggaaaaactgtctcgtcgtctcgaaccttctcgcctccctcaccgccctaacccttcctcttctcctccgccgccgccaccgccgctccgccccctccgtcccttcgccgctaccgatctcccccgcccgcccgcggagatggacgacagctgcgcggtgtgcgcggacgcgctggagtgggtggcctacggggcctgcggccaccgcgaggtttgctcgacctgcgtcgttcgcctccgcttcgtgatgggcgacaagcactgctgcatctgcaagaccgagtgctcctccgtattcgtcaccaaggttcgtatcgtcgctagggtttcctccgccccggccaggttgtttgatctgtgccgtcgggagcgtcggtggatcttgggtcgtcggctggttagggtttcgatgggcttgaaatatggggctcttgctcgtgaaattgtatggttttatggtggtgaaaatttgttcgatttcacgaactaatgttgttggctaattatgtgaacttagcttattgtatgaattggttcctagggagttgggatttcagctaaaaacctaatgctactgagaagaagacaatgagtttaatcagcacaaatttatttaatcagaaatttgttttgtcaagcgattaggggtcggcaatttgagttcaggtgttaataatgggatgccatggttcctgtacttccttttttgatacatggcattgcaagctactattattcttacacttagtgtgaccgattatgatatttaggcttatgactgagctagaaatttttttatcgagctttattaatgtgagtttgttaggcttccctatctgagttatcagcattttttctgttgtgttttattagtgcaaagacaagcagaaaaaaaatgtgcaagtgttcctttaatgttttatgttttcactatgaatttcctttgctatttaatcgatggctgattgtgtaactcattggttactttctctgtttttttttataataaaattagactgaagtcattgtatagctaaaggattgcatgtgcagtcttcatatgaatttaaaattttaattatggctcattcatctttgatcattcaacaggctatgggcgattacacaaaagtgataaatgatttcaatattttcccccctgtggcaactgagggaaaggtgggggagtactggtaccatgaggatagccaggcattttttgacgatgctgagcactacaagatgatacgagcaatgtgtcggctttcttgtagtgtgtgtgacaaagctgaagatcaggctggccaggcagcacaagtaaggcgcaaaagcaagttcaggagcattgaacagctgaagggacatttgttccatcaacataggttatacatgtgcagtctttgcttggaggggagaaaggtgacattcttgacaacaatgtgctcttttctccttaaatagtcactgttggtttgattgtttcctgcattttaaaaataaaatcagcatgaagtcttaagagactgtcatggggaatgatctagctacttatgtggacatgctttgctcattgtgtgagcctagtaggtactacctctgtccctaaataagtgcacttctagcacccaaattttataccaaaataagtgcacccctagagtaagcttatcccatccatcacttcccattcaattttctacctattttacccccaactaccctcccacttctaaccatgactcatttaattgggggcttatatgtcatttatcttcctagtgatttgtctgccatgtgctaaatgcacttatttaggatgatggtagtagtaattaagtaatcttgactattgttgatatcactgcttttactatgtatgccatatgtaaatatgtaaaagatcggagaaatctataagtacttggtgaaagatcttttgctttccataaagtgttgcttttgctttgtgtgatgagttgactttttttggggggaaatggaattgaaattcttgcaaactaaagaaattgaagcagagatactttctcatgaggatggtaacatttagagtagttagtctatgtttaattgtggctacatgctacatagcccagtgccagttccccatcgtcacagttactgcatattctcattgctttaaaatgtaatgtgcttatggaattgtatgcatgacctcatagactggtggccagcttttgtcaactcggctagtccaccagggtgctgaccgatctcagtggtgtctaggttgtgctcggaactgatttcttgaatactggtccaatgcaaaccattccacttgagcattttttatctgtatgaataatttggtttactaacctagaagtatttaattaaaaccaatttatatcagttatgttggatacagtattaatgtagtaatataatattggggacacagaccatgctatttgaagtgaaagtaactgaagctgatgtctgtatgtttgaagctgagattgattttgtaatgtgcattttcaacccactgggaaggtagaaatgaaaagctttacgttaacaccctccaactataataaattatctattttgcccacacgcatattgttatcttgataacataggggctattttactacacttttaactaactgagacttgatggtagtttgtttgactagttgatgtgttgttggccaggtgttcatttgtgaacagaagctttatacaaggacacagttaaatcagcatgtaaaaactggtgactctgaggtggatggctctgaggttgagcgcagtggttttgcaggacatcctatgtgcgagttctgcagaagttcattttatggagataacgagctttacacacatatgtcccgagaacactattcatgtcacatatgtcaaaggtatcatcatgtacctcattacccttagctaaattgtactaacacgctatgtgatattctaacttacgattggtcattggttgcaggcaacatcctgggcagtatgattatttccggaattatgatgacttggaggtttgttggcacaaatggatatgttgcctttgttcgaagatgttttttttttcatttactctgttctgcaagcttttggtagcatcctaatgtatgttttattaattcaattcagttgcatttccgtaaagatcatttcctctgtgaagatgaagcatgtttggcgaagaagtttgtagtcttccagagcgaagcagagctcaaggcaagtatatttcagttagttgtattagctgctctgttactgcattagatgctaggttacttattttcatatttcttggcttgtttatttctccagagacataatgctatggagcatggtgggcggatgtctcgtgctcagaggaatgccgcacttcaggtatgtattagtcttagaatttctcattcttgtgcctaaggtttcccttttatcctgctcacctgtcttgtttgtactaatactggaattttctttgagctaatttttctgtttggctttgtcagataccaaccagctttatatatcgaagaaacgagcaagatgaaaggcgtggtagaggtaggggacggaattctcaccgtgatggatctgaccgggataccccctctatgcaaaatggcagtgcaattataggcaacggttttccaagtcgagttgataatgttacagggtctgtgagtgtcagttctagttctgggcgaggagaatctggccaaagctcaggcaatggacgtgtgtttgaacacttgtcctttcctcctcttcaagaccaggatattcctgatgcaaggatggactctgctcctgatgaaacctcattcccttccctctcagagcagcaaaccagatatgctcatgctcttagtcagagttcccttgctgccaagcttggggatgagttattattccctccactacctgggtcaagtagcaacaggggttctacttcaactcaacaggggctacaaagtctagcgaagaacacacttgcatcaaggcttcagcagcgtagcaagggcagtgtgaaagtacttcattctgcccggcctcgcccatctgaaaatcctgaatcagtccctcctgtttctagttccccacagatgtggcctacacctgatcaggggctgcttcattctagttcttcccagcttcgaattgtaagagaaaatgggattatgtcatctgccgactcggcatggaatcctggaggtggagcttcaaacaggatgaagcactctgtttctactcctaatcttatgtctggtgggtcctctgttcaggcactaagtacatctaacggtggcaataaaaaacaacagccaccacaaagcagccaaacattgcctgctgctgatgatgttcgtgctgccaataagaccctggttgaaagaatgcgcagtgctttaggcatggatgaagataggtactctgcatttaaagaaatcgctggtgaataccgtcaaggcatcattggtacttcagaatatctttcatatgttgagcaatttggtctgtcacaccttgtgcctgaaatggctaggctgttacctgatcctcagaagcagaaagaacttgctgatgcctatcacaccaatatacgcttcagaagcctccaagagaacagtgatggtttaaccattacctcaaaggagggtggccgcaagaaaaagggcaagggaaaatctcatgatgttacagaaactagtgctgctcctgctaaggatatgaaggattcactagcagatagcttcctggacactgtaaggaagcttcagttaaacaagactcaggaaggagaggctgaggtgctgtcaagggatgggtatcgatcttccaagggaaaggcccaactaataactggaggttcatcatctagtacaccatgtctagatggtgatcatggtgccatttcaatggcttcttgtgccaaagatgatgtaggcaagggaggaggtagcagcaacagcaacatcaacaaacaatcaaagaagacatcaaagtttctcagagcccgattaggtgataactccttagctacacttgatttgagtcgtcctaccatgagccctgaacgaccagaaagggaatcgcaaggcccacaggtagggttgcctatgcgaggtgtttggaaaaatggagggggccagaagctctttacgggcaatggaaggaagtaaaatcattttgcagatgcagtttgacttttgaaacgagctggtcaatggtacaagcagattctgttgccaagtgtgcatattttgtgatcagttggttagctggtcgtgggagagctttattgctcctttgaagatcatcgcctttgaattacacctcactttcttgttttctttgccaaaacatcaactgaggctgaaacttgaaacagtaatggcgtgatattacgttactggccagttagtggaatccattggtagatggtattttacatgagctctgccaaatattatagttactttatcactttgtttgtgctggattgcagtcaaagacatgtatttagtgtgtctgtgatcaggccgaccctaactgaattcgtgaaagttgaaatctcaatgttcttcgtgttatttaaacggaattgctagaaaactctttcgtaagttttttgctcccaaaacttttagatttgtgaccataggatcaccttgagatttgtgcatgaagggggaaaaatactataaagaaaatttcacagt</dnaseqindica>|
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| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061619.1 RefSeq:Os05g0279400]|
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| − | }}
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| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
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| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 5]]
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| − | [[Category:Chromosome 5]]
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