|
|
| (One intermediate revision by one other user not shown) |
| Line 1: |
Line 1: |
| − | Please input one-sentence summary here.
| + | The rice '''Os05g0106000''' was reported as '''''ZOS5-01''''' in 2007 <ref name="ref1" /> by researchers from the India. It is a member of C2H2 transcription factor gene family. |
| | | | |
| | ==Annotated Information== | | ==Annotated Information== |
| | + | ===Gene Symbol=== |
| | + | *'''''Os05g0106000''''' '''''<=>''''' '''''ZOS5-01''''' |
| | + | |
| | ===Function=== | | ===Function=== |
| − | Please input function information here.
| + | * The Cys 2/His 2 zinc-finger proteins (ZFPs) constitute one of the largest transcription factor class regulatory protein families in eukaryotes. <ref name="ref1" /> <ref name="ref2" /> |
| − | | + | * The classical C2H2 zinc finger domain is involved in a wide range of functions and can bind to DNA, RNA and proteins. |
| − | ===Expression===
| + | * Plant Q-type C2H2 zinc finger transcription factors play an important role in plant tolerance to various environmental stresses such as drought, cold, osmotic stress, wounding and mechanical loading. |
| − | Please input expression information here.
| + | * The ZFPs not only interact with DNA or chromatin but their interactions with RNA and other proteins are also well documented in lower as well as higher eukaryotes. |
| − | | |
| − | ===Evolution===
| |
| − | Please input evolution information here.
| |
| − | | |
| − | You can also add sub-section(s) at will.
| |
| | | | |
| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | Please input related labs here.
| + | * Interdisciplinary Centre for Plant Genomics and Department of Plant Molecular Biology, University of Delhi South Campus, Benito Juarez Road, New Delhi 110021, India |
| | + | * Division of Genetics, Indian Agricultural Research Institute, New Delhi 110012, India |
| | + | * Plant Disease Resistance Research Unit, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba 305-8602 Ibaraki, Japan |
| | | | |
| | ==References== | | ==References== |
| − | Please input cited references here.
| + | <references> |
| | + | * <ref name="ref1"> |
| | + | Xu H, Watanabe KA, Zhang L, Shen QJ. WRKY transcription factor genes in wild |
| | + | rice Oryza nivara. DNA Res. 2016 Aug;23(4):311-23. doi: 10.1093/dnares/dsw025. |
| | + | PubMed PMID: 27345721; PubMed Central PMCID: PMC4991837. |
| | + | </ref> |
| | + | * <ref name="ref2"> |
| | + | Englbrecht CC, Schoof H, Böhm S. Conservation, diversification and expansion |
| | + | of C2H2 zinc finger proteins in the Arabidopsis thaliana genome. BMC Genomics. |
| | + | 2004 Jul 5;5(1):39. PubMed PMID: 15236668; PubMed Central PMCID: PMC481060. |
| | + | </ref> |
| | + | |
| | + | </references> |
| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 5]] |
| − | GeneName = Os05g0106000|
| |
| − | Description = Zinc finger, C2H2-type domain containing protein|
| |
| − | Version = NM_001060950.1 GI:115461630 GeneID:4337562|
| |
| − | Length = 3237 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os05g0106000, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| − | | |
| − | ORGANISM Oryza sativa Japonica Group
| |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| |
| − | |
| |
| − | Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
| |
| − | AP = Chromosome 5:299218..302454|
| |
| − | CDS = 299464..300063,300480..300620,301062..301151,301751..301950,302072..302130<br>,302214..302329|
| |
| − | GCID = <gbrowseImage1>
| |
| − | name=NC_008398:299218..302454
| |
| − | source=RiceChromosome05
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage1>|
| |
| − | GSID = <gbrowseImage2>
| |
| − | name=NC_008398:299218..302454
| |
| − | source=RiceChromosome05
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage2>|
| |
| − | CDNA = <cdnaseq>atggagtacgcggcgccggcaggggcaggggcagggggctactactactacccgccgtcgcagcagcacaagcctcgccgtcccccgcggcccgccgcccgctgggtcaagcactggatcccgcaggatctcgccacctcctccggcaaatgcgccctctacaagtgggtcagggaggatgtgtacaagaatctcaaggacggcaaggccgtgccggagccggaggcggtgaagcctgaacccaccacggagatcctcttcctctgcagctatgaaaactgtggcaaaacctttgtcgatgtcgccgccttaaggaagcacgctcatgtgcacaacgagaggcagtatatttgtcaggagcctggctgtgggaagaaattcgtagatagctccaagttgaagagacaccaccttattcatacaggacagaaggattttatctgtccccatccaggctgtggtaaggccttctcattggattttaacctgcgttcgcatctaaaaacgcatgcgttggaaaactatcatgtatgcccatttccagcatgtggcaaaagatttacgagtgactccaaattaaaatcccatgtcaagggccatgaaaagactggaactccgatcacagcacaatatgtgccatcatcagataaaccacaaagcagcagtaagcctgcgacaccagcaacaactaagcctacaacaccagcagcaacgaagacgacaacacctgcatcaactaagcctacaacaccagcacccacaagctttgctgagcgaccatatgtctgcccatatgatggttgtgggaaagcctacattcacagttacaaattgaaccttcatctaaaaactcagcatcctgaacatggtcaagaagagaatggtaggattgctgcacatgcaagtgagcatgctgtaaatgatcgtgccaatcagtataactatgctgagattgtcgaccttgcaccgaatccaaaaaggagcaagacaaattcagggcataagaccccctcatctaataaagcctacaatgtcaagatttctagcgtgttgcctgctgatatcagtggagtgaagaatcagtggccaggtaagtatgaagatgacagtgaagagacagaagaagaccagggcaacaacattgaagatggctggagatatggtaaccagaatgccgatgatgaggaaacagaatatgaagattaa</cdnaseq>|
| |
| − | AA = <aaseq>MEYAAPAGAGAGGYYYYPPSQQHKPRRPPRPAARWVKHWIPQDL ATSSGKCALYKWVREDVYKNLKDGKAVPEPEAVKPEPTTEILFLCSYENCGKTFVDVA ALRKHAHVHNERQYICQEPGCGKKFVDSSKLKRHHLIHTGQKDFICPHPGCGKAFSLD FNLRSHLKTHALENYHVCPFPACGKRFTSDSKLKSHVKGHEKTGTPITAQYVPSSDKP QSSSKPATPATTKPTTPAATKTTTPASTKPTTPAPTSFAERPYVCPYDGCGKAYIHSY KLNLHLKTQHPEHGQEENGRIAAHASEHAVNDRANQYNYAEIVDLAPNPKRSKTNSGH KTPSSNKAYNVKISSVLPADISGVKNQWPGKYEDDSEETEEDQGNNIEDGWRYGNQNA DDEETEYED</aaseq>|
| |
| − | DNA = <dnaseqindica>2392..2991#1835..1975#1304..1393#505..704#325..383#126..241#acgcccaccgctgaacaaaaaaagaaaagaaaagaaaagaaaaaccctaggccgcctagagagagaaaggaggagaagggttcgccggcggcggatcggatcggcggcattcactcgtcatctcgatggagtacgcggcgccggcaggggcaggggcagggggctactactactacccgccgtcgcagcagcacaagcctcgccgtcccccgcggcccgccgcccgctgggtcaagcactggtatggtatccacgctacgcctttcttctcgatgattgatgttcttctactcatcatatcatgtggttggttttgcattgcaggatcccgcaggatctcgccacctcctccggcaaatgcgccctctacaagtgggtcaggggtaatcttctcttctcttcctttaattttcccccaaattttctttaccacattgcagcattacattacttgtgcttgtcttgtttcaatcgatttctttctttccttgtgcgtgcgtgcagaggatgtgtacaagaatctcaaggacggcaaggccgtgccggagccggaggcggtgaagcctgaacccaccacggagatcctcttcctctgcagctatgaaaactgtggcaaaacctttgtcgatgtcgccgccttaaggaagcacgctcatgtgcacaacgagaggcagtatatttgtcaggagcctggctgtgggaaggtagtatctccacattttgccccttcttccatgtatcatgtagtatgtgattatctattctctagtgcccgctacatcaccgaaatgtttctaaccaatatgtctgcctcctttccaccagccctttaccctgattattttccttattttgttctctcttttttttttcatagaataagctccatagttacaatccagcaaattgccagtaagccatacctgtaggtctgagtccttgtattatttcctatacttacttcctgcataacagccagtgcaaaccatgtgtttgatctagtgccgatcctgctgtgttacttgtaagcatctttccatcttttccaccagccctttaccttgctcacctgattattttccctatgctgtttatttcttctcatagaataagctccatgattacaatgcagcaaatggccaagttacccatagtccttgtgttatgacctataccaacaacctgtaaaactggcagacagctgttatatgtgtgctcaacttctaaggaagaatgtttgtcttaaattacttattccttttcgttatacatgtgatgaatcctattcctttatttcttgcagaaattcgtagatagctccaagttgaagagacaccaccttattcatacaggacagaaggattttatctgtccccatccaggctgtggtaaggtgattaccttatccctctactcaaagaatctctaccgaatgactgcacttttgcctttacttctccacatactacttgttcttttactttttttttccatagtaatcaaagctaaccttagcatatgttgtgttaaaggtgcaaacctgtatgtgatttcatgttaactctacctgattgaatactttcccctgatctgattagttgaacacttgagctgctttatggaaatttaccctagtccttccggtctgttgtttgtttgtacactgacatgctgtctacattattgcaaaatttggagacaacatatgcacacccacaagtggctgatttgagaagaaatgtagcataaattctcaggccttttaattagtgaatcctttgaccatgttgcagtgcatcttcatgttcttacaaagaaatcctgtgaatttcaggccttctcattggattttaacctgcgttcgcatctaaaaacgcatgcgttggaaaactatcatgtatgcccatttccagcatgtggcaaaagatttacgagtgactccaaattaaaatcccatgtcaagggccatgaaaaggtatgctctatggtgcactgacttccatttgctgttttttcaattgtttttatatgtaacgactagcttgaaatctcattatagaagccatatcagaaataattaaattgaaactggtaaagattctcatagctatttttcaaagaaaagtattacaacacgaaactgcctgctcccccagtgtacttgttcagaatgcatgctcattgttgttctgatatattataataaaatacagttgcagcagcaaaatgtagtctcgggttaatgccatactgatatattataataaaatgcaactagaaaatctttttcaaatcacctattgtgttgcatcacaaaatttacaatggtttgtagaatttttatgtactccctctgatttacataatgcgctcaatgtggccatgatgcagactggaactccgatcacagcacaatatgtgccatcatcagataaaccacaaagcagcagtaagcctgcgacaccagcaacaactaagcctacaacaccagcagcaacgaagacgacaacacctgcatcaactaagcctacaacaccagcacccacaagctttgctgagcgaccatatgtctgcccatatgatggttgtgggaaagcctacattcacagttacaaattgaaccttcatctaaaaactcagcatcctgaacatggtcaagaagagaatggtaggattgctgcacatgcaagtgagcatgctgtaaatgatcgtgccaatcagtataactatgctgagattgtcgaccttgcaccgaatccaaaaaggagcaagacaaattcagggcataagaccccctcatctaataaagcctacaatgtcaagatttctagcgtgttgcctgctgatatcagtggagtgaagaatcagtggccaggtaagtatgaagatgacagtgaagagacagaagaagaccagggcaacaacattgaagatggctggagatatggtaaccagaatgccgatgatgaggaaacagaatatgaagattaaccaaacgattctcttttgtcctttactaacatcctgctgcaatatatgcactaactagacagtagacgtggtggctgatacctttactaatctgcgtgcattctgaaccctggaagtagattagagaagtgctgttcttgagagtagtagaatcagatggccgtgattgtgtggtttggtcataaatagtctttgtatgcgacttattctcgttcagttttttatgctcgatctatgtattcaatc</dnaseqindica>|
| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001060950.1 RefSeq:Os05g0106000]|
| |
| − | }}
| |
| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 5]]
| |
| − | [[Category:Chromosome 5]]
| |
