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| − | Please input one-sentence summary here.
| + | The rice '''''Os04g0471700''''' was reported as '''''OsWRKY35''''' in 2007 <ref name="ref1" /> by researchers from USA. |
| | | | |
| | ==Annotated Information== | | ==Annotated Information== |
| | + | ===Gene Symbol=== |
| | + | *'''''Os04g0471700''''' '''''<=>''''' '''''OsWRKY35''''' |
| | + | |
| | ===Function=== | | ===Function=== |
| − | Please input function information here.
| + | * The plant '''''WRKY''''' transcription factors are involved in the regulation of various biological processes. |
| | + | * The '''''WRKY''''' genes encode zinc-finger proteins, which may play import roles in disease resistance and responses to salicylic acid and jasmonic acid, seed development and germination mediated by gibberellins, other developmental processes including senescence, and responses to abiotic stresses and abscisic acid in rice. |
| | + | * Several studies have suggested that some '''''WRKY''''' proteins may be the target of mitogen-activated protein kinases (MAPK) that alter their activity. |
| | + | * The researchers think that the studies of '''''WRKY''''' transcription factors family will not only further our understanding of the fundamental processes that are controlled by WRKY genes in plants, but also help enhance agricultural productivity. |
| | | | |
| | ===Expression=== | | ===Expression=== |
| − | Please input expression information here.
| + | * WRKY mRNA accumulates rapidly after induction and seemingly does not require the synthesis of new transcription factors. <ref name="ref2" /> |
| | | | |
| | ===Evolution=== | | ===Evolution=== |
| − | Please input evolution information here.
| + | * The '''''WRKY''''' gene family is widely distributed among terrestrial plants and is present in both monocotyledonous and dicotyle-donous plants. |
| | + | * There are more '''''WRKY''''' family members in rice than in Arabidopsis. |
| | + | * A phylogenetic analysis of WRKY domains between rice and Arabidopsis shows WRKY domains of the same type forming independent domains within their species, suggesting that numerous WRKY gene duplications occurred after the divergence of the monocotyledons from dicotyledons some 50–80 million years ago.<ref name="ref3" /> |
| | | | |
| | You can also add sub-section(s) at will. | | You can also add sub-section(s) at will. |
| | | | |
| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | Please input related labs here.
| + | * Bioinformatics Core, School of Life Sciences, University of Nevada, Las Vegas, Nevada 89154, USA |
| | | | |
| | ==References== | | ==References== |
| − | Please input cited references here.
| + | <references> |
| | + | * <ref name="ref1"> |
| | + | Xu H, Watanabe KA, Zhang L, Shen QJ. WRKY transcription factor genes in wild |
| | + | rice Oryza nivara. DNA Res. 2016 Aug;23(4):311-23. doi: 10.1093/dnares/dsw025. |
| | + | PubMed PMID: 27345721; PubMed Central PMCID: PMC4991837. |
| | + | </ref> |
| | + | * <ref name="ref2"> |
| | + | Eulgem T, Rushton PJ, Robatzek S, Somssich IE. The WRKY superfamily of plant |
| | + | transcription factors. Trends Plant Sci. 2000 May;5(5):199-206. Review. PubMed |
| | + | PMID: 10785665. |
| | + | </ref> |
| | + | * <ref name="ref3"> |
| | + | Zhang Y, Wang L. The WRKY transcription factor superfamily: its origin in |
| | + | eukaryotes and expansion in plants. BMC Evol Biol. 2005 Jan 3;5:1. PubMed PMID: |
| | + | 15629062; PubMed Central PMCID: PMC544883. |
| | + | </ref> |
| | + | </references> |
| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]] |
| − | GeneName = Os04g0471700|
| |
| − | Description = Similar to WRKY10 (WRKY transcription factor 35)|
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| − | Version = NM_001059592.1 GI:115458913 GeneID:4336126|
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| − | Length = 7317 bp|
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| − | Definition = Oryza sativa Japonica Group Os04g0471700, complete gene.|
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| − | Source = Oryza sativa Japonica Group
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| − | | |
| − | ORGANISM Oryza sativa Japonica Group
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| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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| − | clade; Ehrhartoideae; Oryzeae; Oryza.
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| − | |
| |
| − | Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|
| |
| − | AP = Chromosome 4:23978414..23985730|
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| − | CDS = 23978546..23979218,23979307..23979468,23979563..23980416,23980662..23980823,23981407..23981859<br>,23982939..23982998,23983193..23983268,23984756..23984803,23985158..23985232<br>,23985277..23985710|
| |
| − | GCID = <gbrowseImage1>
| |
| − | name=NC_008397:23978414..23985730
| |
| − | source=RiceChromosome04
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage1>|
| |
| − | GSID = <gbrowseImage2>
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| − | name=NC_008397:23978414..23985730
| |
| − | source=RiceChromosome04
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage2>|
| |
| − | CDNA = <cdnaseq>atgacgatgacgaccgcgacgctggatccgccgccgcctcccctcctcatcgccggctccctcctcgacgacgatcgcgacgctggatctgccgcctcctcctctcctcgctggctcccccgggcgcgcggatccaccgtcggctcccctcctcgccggggaggggaggagaggggaggggaggcggcgacgaggaggaaaggcaacagctcctgtcctgacgacgacgatgactgccgcaacgacgaggacgactgccgcaacgacgacgactaccgcgacgatgatgtgggggcgacgacggatggaggaggagacgcggcggctcttctcccgatggcgatgatgactgccacgacgatggcgccgatgcctgtcgaggcagcggtggacggaggaggagagctgtcatcggccggagagggtggccagcggcgggtgaatctactgcctacgaagatattgtccgcctacgaaaatcatctattttcgcaggcccttgcttgcagggaagatgaatggatcatcgagaagcttgcggtcatcgctgctagacgctcatcatttgtctctgaagaatccttgtgctctgttccggctgcggctttggtctctttggccattgcccatttggctttctcccccatgttggtctatggcgttcttgatcgtttatgttccgtttgccatctgggtgagatggagggagacatagcgatggaggagtggaaggattccaaccatcgaggcgcggattacctgatgacgatgccgatgcagaacttcctcgccgacgcgttcccgccaccggagctcttggagggagaaggcgggttcgagaagcacggcctgtcggtggccgttggctcgccgccgccgacgccgccgcctccggaggacgggtgctcgccgctgccactgacgccgcagttcggccagaagttcggctccggcggcggcggcggcggcagcctcgccgacaggagggcgagaggcgggttcagcaacgtcgccaggatcagcgtgccgtacaaccagccggcggcggacgtgtcgtcggcgggggcgccgtcgccgtacgtgacgatcccgcccggcctgagcccgacgactctgctggaatcgccggtcttctccaatgccatgggccaggcctcgccgaccactgggaagctgcacatgcttggtggtgccaacgacagcaatccaatcagatttgaatcccctcggatcgaagaaggatctggtgcattttctttcaagcctctgaatctcgcatcctcacactacgcagctgaagaaaagacgaaatctctacccaacaaccagcatcagtcgctaccgatttctgtcaagactgaagctactagcattcaaaccgcacaagatgaagcagcagccaaccaactgatgcagccgcagttcaacggcggcaagcggagccgcgctgcacctgacaacggcggcgacggcgagggccagccggcggagggcgacgcgaaggctgactcctcctccggcgcggccgcggtcgccgtcgtcgccgccgccgcggcggcggtggcggaggacgggtacagctggaggaagtacgggcagaagcaggtgaagcacagcgagtacccgaggagctactacaagtgcacgcacgccagctgcgcggtgaagaagaaggtggagcgctcgcacgagggccacgtcacggagatcatctacaagggcacccacaaccaccccaagccggcggcgagccgccgcccccccgtccatcctccgccgccgtcgccggcgacgacgacgacgacgccgctgccgccaggcgacgcgcaggccgaccacgcgcccgacggcggcggcggcagtaccccagttggcgccggacaggcgggcgcggagtggcacaacggcggcgtggttggcggcgaggggctggtggacgcgacgtcgtctccctccgtccccggcgagctctgcgagtcgacggcgtcgatgcaggtccatgaaggcgcggcggcggcgcagctgggggaatcccccgagggcgtcgacgtcacgtctgcggtgtccgacgaggtggacagggatgacaaggcgacgcacgtgttgcccctggccgccgccgccgccgacggcgagagcgacgagctggagcgaaagagaaggaagctggactcctgcgccaccatggacatgagcacggcgtcgagggcggtgcgcgagccgcgggtggtgatccagacgacgagcgaggtggacatcctcgacgacggctaccgctggcgcaagtacgggcagaaggtcgtcaaggggaaccccaacccaaggagctactacaagtgcacgcacccggggtgcctggtgcggaagcacgtggagcgcgcgtcgcacgacctcaagtcggtgatcaccacgtacgaggggaagcacaaccacgaggtccccgcggcgaggaacagcggccacccggcgggctcggcttcgcccggcggcggcgcggggtcgtcgtcgcagccccacggcgtcggcgtcggcgggcgcaggccggaggtgccgtcggtgcaggagagcctgatgaggctcggcggcggctgcggcgcggcgccgttcccgccccacttcggcctgcacctgccgccgccgccgccgagggacccgctcgcgccgatgagcaacttcccctactcgctcggccacgcgccgtcgccggcgctgcggggcctgccgccgcccccgcccccgccgccgtcggcgtcggcgctggcggtggcggggctcggcggcgtggtggaggggctcaagtacccgatgctggcgccgccgtcggtgcactcgctgctgaggcaccgccagggcggcggcatggaggcggtggtggtccccaaggcggaggtgaagcaggaggcgatgcggcccgccgccgccgtcgccggcgcggggcgcggcgcggcggtgtatcagcaggcgatgagcagggtgtcgctggggaatcaactgtag</cdnaseq>|
| |
| − | AA = <aaseq>MTMTTATLDPPPPPLLIAGSLLDDDRDAGSAASSSPRWLPRARG STVGSPPRRGGEERGGEAATRRKGNSSCPDDDDDCRNDEDDCRNDDDYRDDDVGATTD GGGDAAALLPMAMMTATTMAPMPVEAAVDGGGELSSAGEGGQRRVNLLPTKILSAYEN HLFSQALACREDEWIIEKLAVIAARRSSFVSEESLCSVPAAALVSLAIAHLAFSPMLV YGVLDRLCSVCHLGEMEGDIAMEEWKDSNHRGADYLMTMPMQNFLADAFPPPELLEGE GGFEKHGLSVAVGSPPPTPPPPEDGCSPLPLTPQFGQKFGSGGGGGGSLADRRARGGF SNVARISVPYNQPAADVSSAGAPSPYVTIPPGLSPTTLLESPVFSNAMGQASPTTGKL HMLGGANDSNPIRFESPRIEEGSGAFSFKPLNLASSHYAAEEKTKSLPNNQHQSLPIS VKTEATSIQTAQDEAAANQLMQPQFNGGKRSRAAPDNGGDGEGQPAEGDAKADSSSGA AAVAVVAAAAAAVAEDGYSWRKYGQKQVKHSEYPRSYYKCTHASCAVKKKVERSHEGH VTEIIYKGTHNHPKPAASRRPPVHPPPPSPATTTTTPLPPGDAQADHAPDGGGGSTPV GAGQAGAEWHNGGVVGGEGLVDATSSPSVPGELCESTASMQVHEGAAAAQLGESPEGV DVTSAVSDEVDRDDKATHVLPLAAAAADGESDELERKRRKLDSCATMDMSTASRAVRE PRVVIQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCLVRKHVERASHDL KSVITTYEGKHNHEVPAARNSGHPAGSASPGGGAGSSSQPHGVGVGGRRPEVPSVQES LMRLGGGCGAAPFPPHFGLHLPPPPPRDPLAPMSNFPYSLGHAPSPALRGLPPPPPPP PSASALAVAGLGGVVEGLKYPMLAPPSVHSLLRHRQGGGMEAVVVPKAEVKQEAMRPA AAVAGAGRGAAVYQQAMSRVSLGNQL</aaseq>|
| |
| − | DNA = <dnaseqindica>6513..7185#6263..6424#5315..6168#4908..5069#3872..4324#2733..2792#2463..2538#928..975#499..573#21..454#ctctgctggctccctcctcgatgacgatgacgaccgcgacgctggatccgccgccgcctcccctcctcatcgccggctccctcctcgacgacgatcgcgacgctggatctgccgcctcctcctctcctcgctggctcccccgggcgcgcggatccaccgtcggctcccctcctcgccggggaggggaggagaggggaggggaggcggcgacgaggaggaaaggcaacagctcctgtcctgacgacgacgatgactgccgcaacgacgaggacgactgccgcaacgacgacgactaccgcgacgatgatgtgggggcgacgacggatggaggaggagacgcggcggctcttctcccgatggcgatgatgactgccacgacgatggcgccgatgcctgtcgaggcagcggtggacggaggaggagagctgtcatcggccggagagggtggccagcggtggcgttgcatcttttttttatttgctgaaatattttttgcaggcgggtgaatctactgcctacgaagatattgtccgcctacgaaaatcatctattttcgcaggcccttgcttgcaggtggaacgcctatccgcctagaaagatggatttggcccgtcagcaaataccttttttctagtagtgctacttcctccctcatttcagcacatctccttcaacttatgtggcataaagccctccccccctaccgttccttcctcgtatttggtggtatccgctgctgcctcctaactactttcattgatgttgcccccgttgccaacccagtccagtgctgaacttccgtatcctcggccgtcacactaaacccgccctcacatcctccccccccacccccacctctttaccacgtcacaaccccgaaaacctaacctcttattctctgtcggagtttgggtgtcgctgttatagggaagatgaatggatcatcgagaagcttgcggtcatcgctgctagacggtaagccccagctctcacctcaaccctctttcttcgatctctcgttgcatctcctactcaaggctgaaggtcaatcacctgaaatattgcgattttcaaaaataaaacttgagttttggtaaaaaaaaaaacaaaactatgagtaaaaacgtgtttttagggaaagcggaaacacttgctctaattatacaaaagaaactgaaagttagttacccactattctgttttgtaacctaaccgaatttgagttcgttacttttcctgctatctagcaacttctacgaatgcgtagtagctacagaacgaagtctctcacccaataccgtttcatgcagaaattttacagaacgtccggcacagcacaataccgttaccgcgtttcatgtatatcttttttttcacagaacatcatcgatcggctctccatgtaaaattgtatttcccctgtaacagaaaattttttgtaactataaatctaaacatgtgtttgttcaaattcatgtgcaggatttaattctcttttagaagcacaactattctcctcgcatccccttcccaccatatgcagaaggccatccgctcctttcgtgagtgtaaccaccgtagatcccatctacttaaccaacccttagttatacgagcataacacgttgcaaagcagagccatatgtcattagtagtaaaaatatactccctccgtccctaaatatttgatgctgttgacttttttaaacatgtttgaccgttcatcttattcaaaaaatttaagtaattattaaatcttttcatatcatttgattcattgttaaatatactactgctacttaagtttttaaataaaacgagcggtcaaacaagtttaaaaaggtcaacggcgtcaaatattttgggatggagggagtagtatatacactccacagtccatgtatataccgcgacaaacaaacagaccacattcacaggagaattcagtcattaaaaccggcatagaaaaccttttccccccacgtcctccatcgtaagattgagagtacagcccgtacctcaattaaaacccctaatttcgaaaaacaccaaccgctccatgacaaccaagcaaaaccaaaactcaagaaaccaaaccccccccccccacccccaaaaccaaaaacaaacaaaaacaaagacaaaagaaaattaaacgagagaggcaaggcaaggcaaaagcaaggccatgcagatggaacgcgcaggcagcacaacatgccatcttcctctcgtaaaccacaagagctccaacgaatcctgcagcacattcccccatccatatcggtcaaaccgccccccttcctctctctctctcctctctttctgtttcttctccatcatcttctctctctagcataaaagaattgcacccaagggaggagagagaatgggaggagagggagagagaggagtaataatggcagggggaaccttcttttcctgactccctgcggctgcagctcatcatttgtctctgaagaatccttgtgctctgttccggctgcggctttggtctctttggccattgcccatttggtgggttggactgagagccatcgggagagagagagagactcgccgccattgttgggctccttgcgaatctcattccgtcgccattggcctgacgatcttgattcgtcgccgccactgccgtttcttgagaggtcagtgctgcatttctgtccaatgtttctgcatatgcaactgccatttccatggacatgcaggctttctcccccatgttggtctatggcgttcttgatcgtttatgttccgtttgccatctggtgggttattcttgatctggatttcttgggctatggggattggtctctcccatccctgtttcagaatgtggcgtcgttggatttttttttttgttttcatttctgcgatgtgcggttgttcttgaatctctttgatccaggcagtggcatgcattgcctctgaaccaagaccgccttctcgtccccgtcattctatttgttcagagattcctcaaaaggaaaaagaaaacaattcttcgtcaagaaaggaaggaaattttgctctgatcgtcatgtcaaaacgaatcagaatgcctctcaggtgccagcatttcccttcctcgtcgccgattcgatatcttcgcctttcggattttctgttcacgtatcgcttccacctcaaaaagaaacggattgaaattgaaatttccaaatcgtaaattcgtaatgttgcttctccgtgtgaggggctcttccaccaccccccttaatcccggacgcgaaatcacaatgtttctgacgaaagttgttgtctcttgttgttcttgcgagccttgagctccgagcctgtaggggtccatccattggccaaccttctcttttcctattcttggaggcagcgaacgagtagttgtaggatcgaacgaacggagtggagtacaacttttgttttttgtttttttctttggctctctttcggttttctgtgtcccttttgtggagggctgtgccggcttaaacctttcgaatgttggcgtgttgtcgtttaccttcgtggacacggtttcaggtttttggaatcgagttcagaggcgaacaaaattgaaatttggagttctttttttttgctggaacctgtggccttcttctgtttcgaaaaaaggtggctctgttttattttttttaaaaacaacacttttgttgtgaaatcctcgtgaagaacaaggatcagctctgaaactgaattcttcttttttactgtcattttctcagtgttgttaagcctgcattggagcactattaatttcttctctgtttttttattgtcattttctcagtgttgtttagcctgcattgtacttctactaatttatttacagggtgagatggagggagacatagcgatggaggagtggaaggattccaaccatcgaggcgcggattacctgatgacgatgccgatgcagaacttcctcgccgacgcgttcccgccaccggagctcttggagggagaaggcgggttcgagaagcacggcctgtcggtggccgttggctcgccgccgccgacgccgccgcctccggaggacgggtgctcgccgctgccactgacgccgcagttcggccagaagttcggctccggcggcggcggcggcggcagcctcgccgacaggagggcgagaggcgggttcagcaacgtcgccaggatcagcgtgccgtacaaccagccggcggcggacgtgtcgtcggcgggggcgccgtcgccgtacgtgacgatcccgcccggcctgagcccgacgactctgctggaatcgccggtcttctccaatgccatggtatccatcatcaattcatcacttggtctgtggttacgatttctagcttgataagcacaccgaaccttgtgtttgtgtgtgcatataatgttagtaagttttagtgttagattcgattgctttttgtgtccatgtaatgttaagctggcaggcaagaatgtttgctttactctactgaacttttgacttctccgggagttcgtacttgctgctcagacttcctccatcatacttgctgctttgtttttaaagatacttattttttttctttcagacaaatgaaccgctacagttgcactgtggatgcattatgcatatgcataataatccagcattatgcgctaaacactgtcccaatgtatatgtacctaagcctaaattaaaattaggcgttaatcgtgttcttattcatatatatcaatgaactctaagaatgcagtgtcttagggtggtcaactgaactcatttcccaacgttatgcgttggtgatacttttaaaattaagttcacaaaagtatgcaaaccctgaagctttggactaacctgaccggacaaaatgctttctgtgtatgggattttgcagggccaggcctcgccgaccactgggaagctgcacatgcttggtggtgccaacgacagcaatccaatcagatttgaatcccctcggatcgaagaaggatctggtgcattttctttcaagcctctgaatctcgcatcctcacactacgcagctgaagaaaagacggtgagcagagttaactgaaaaattattcatactcttcgtacctgttcttcctgttactactgattctggtagctcctagtcactgaactgtttttcaggtttcaaaatgacttgattggccaagttacttctgaattctgactgaaccagcaatttctttcctgaaattttttgttcttaacgtagtagtatctgaagagattttgtgagcatataatgccatttttttttggttttggctgcagaaatctctacccaacaaccagcatcagtcgctaccgatttctgtcaagactgaagctactagcattcaaaccgcacaagatgaagcagcagccaaccaactgatgcagccgcagttcaacggcggcaagcggagccgcgctgcacctgacaacggcggcgacggcgagggccagccggcggagggcgacgcgaaggctgactcctcctccggcgcggccgcggtcgccgtcgtcgccgccgccgcggcggcggtggcggaggacgggtacagctggaggaagtacgggcagaagcaggtgaagcacagcgagtacccgaggagctactacaagtgcacgcacgccagctgcgcggtgaagaagaaggtggagcgctcgcacgagggccacgtcacggagatcatctacaagggcacccacaaccaccccaagccggcggcgagccgccgcccccccgtccatcctccgccgccgtcgccggcgacgacgacgacgacgccgctgccgccaggcgacgcgcaggccgaccacgcgcccgacggcggcggcggcagtaccccagttggcgccggacaggcgggcgcggagtggcacaacggcggcgtggttggcggcgaggggctggtggacgcgacgtcgtctccctccgtccccggcgagctctgcgagtcgacggcgtcgatgcaggtccatgaaggcgcggcggcggcgcagctgggggaatcccccgagggcgtcgacgtcacgtctgcggtgtccgacgaggtggacagggatgacaaggcgacgcacgtgttgcccctggccgccgccgccgccgacggcgagagcgacgagctggagcgaaagagaaggtcgcacacccatcagtatcactgtcctctctgttccttccatggcattgcacgcgaaatcgtctgaatcgtgtgaaatgaatgaatgcttcaggaagctggactcctgcgccaccatggacatgagcacggcgtcgagggcggtgcgcgagccgcgggtggtgatccagacgacgagcgaggtggacatcctcgacgacggctaccgctggcgcaagtacgggcagaaggtcgtcaaggggaaccccaacccaaggttcgtctcgagcctctcctccattttctcagagctcctcctcctccatggatgctgatcgatctctcgtcgtcgtcgtcgtgatcaggagctactacaagtgcacgcacccggggtgcctggtgcggaagcacgtggagcgcgcgtcgcacgacctcaagtcggtgatcaccacgtacgaggggaagcacaaccacgaggtccccgcggcgaggaacagcggccacccggcgggctcggcttcgcccggcggcggcgcggggtcgtcgtcgcagccccacggcgtcggcgtcggcgggcgcaggccggaggtgccgtcggtgcaggagagcctgatgaggctcggcggcggctgcggcgcggcgccgttcccgccccacttcggcctgcacctgccgccgccgccgccgagggacccgctcgcgccgatgagcaacttcccctactcgctcggccacgcgccgtcgccggcgctgcggggcctgccgccgcccccgcccccgccgccgtcggcgtcggcgctggcggtggcggggctcggcggcgtggtggaggggctcaagtacccgatgctggcgccgccgtcggtgcactcgctgctgaggcaccgccagggcggcggcatggaggcggtggtggtccccaaggcggaggtgaagcaggaggcgatgcggcccgccgccgccgtcgccggcgcggggcgcggcgcggcggtgtatcagcaggcgatgagcagggtgtcgctggggaatcaactgtagataaataataaaaaaagaagagcagttttaggagcttttatattcatatgcttaggttaattaattaattaattaatgttaccatgataagtataacgatcagttcttgttcttagtgtttgatttttgcaa</dnaseqindica>|
| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001059592.1 RefSeq:Os04g0471700]|
| |
| − | }}
| |
| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 4]]
| |
| − | [[Category:Chromosome 4]]
| |
