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| − | Please input one-sentence summary here.
| + | The rice '''''Os04g0461300''''' was reported as '''''OsMADS61''''' in 2007 <ref name="ref1" /> by researchers from India. |
| | | | |
| | ==Annotated Information== | | ==Annotated Information== |
| | + | ===Gene Symbol=== |
| | + | *'''''Os04g0461300''''' '''''<=>''''' '''''OsMADS61''''' |
| | + | |
| | ===Function=== | | ===Function=== |
| − | Please input function information here.
| + | * The MADS-box family members, identified initially as floral homeotic genes, are one of the most extensively studied transcription factor genes in plants. |
| | + | * MADS-box genes have a variety of functions. In animals, MADS-box genes are involved in muscle development and cell proliferation and differentiation. Functions in fungi range from pheromone response to arginine metabolism. |
| | + | * MADS-box transcription factors, besides being involved in floral organ specification, have also been implicated in several aspects of plant growth and development.<ref name="ref1" /> <ref name="ref2" /> <ref name="ref3" /> |
| | | | |
| − | ===Expression=== | + | ===Evolution=== |
| − | Please input expression information here.
| + | * The MADS domain binds to DNA sequences of high similarity to the motif CC[A/T]6GG termed the CArG-box. |
| | + | * The MADS-box family has been divided into two main groups. The type I consists of ARG80/SRF-like genes of animals and fungi, also designated as M-type genes in plants, and type II contains MEF2-like genes of animals and yeast as well as MIKC-type genes of plants. |
| | + | * It is proposed that an ancestral duplication before the divergence of plants and animals gave rise to these groups |
| | + | * The length of the MADS-box reported by various researchers varies somewhat, but typical lengths are in the range of 168 to 180 base pairs, i.e. the encoded MADS domain has a length of 56 to 60 amino acids. |
| | + | * MADS-box genes seem to have evolved mainly through gene duplication events followed by neofunctionalization, subfunctionalization or in some cases pseudogenization of the duplicated gene. |
| | + | * However, redundancy being one of the fates of duplication is also common in MADS-box family.<ref name="ref1" /> <ref name="ref2" /> <ref name="ref3" /> |
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| − | ===Evolution===
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| − | Please input evolution information here.
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| | You can also add sub-section(s) at will. | | You can also add sub-section(s) at will. |
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| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | Please input related labs here.
| + | * Interdisciplinary Centre for Plant Genomics and Department of Plant Molecular Biology, University of Delhi South Campus, Benito Juarez Road, New Delhi 110 021, India |
| | + | * Division of Genetics, Indian Agricultural Research Institute, New Delhi-110 012, India |
| | | | |
| | ==References== | | ==References== |
| − | Please input cited references here.
| + | <references> |
| | + | * <ref name="ref1"> |
| | + | Arora R, Agarwal P, Ray S, Singh AK, Singh VP, Tyagi AK, Kapoor S. MADS-box |
| | + | gene family in rice: genome-wide identification, organization and expression |
| | + | profiling during reproductive development and stress. BMC Genomics. 2007 Jul |
| | + | 18;8:242. PubMed PMID: 17640358; PubMed Central PMCID: PMC1947970. |
| | + | |
| | + | </ref> |
| | + | * <ref name="ref2"> |
| | + | Shore P, Sharrocks AD. The MADS-box family of transcription factors. Eur J |
| | + | Biochem. 1995 Apr 1;229(1):1-13. Review. PubMed PMID: 7744019. |
| | + | </ref> |
| | + | |
| | + | * <ref name="ref3"> |
| | + | Winter KU, Becker A, M��nster T, Kim JT, Saedler H, Theissen G. MADS-box genes |
| | + | reveal that gnetophytes are more closely related to conifers than to flowering |
| | + | plants. Proc Natl Acad Sci U S A. 1999 Jun 22;96(13):7342-7. PubMed PMID: |
| | + | 10377416; PubMed Central PMCID: PMC22087. |
| | + | |
| | + | </ref> |
| | + | </references> |
| | + | |
| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]] |
| − | GeneName = Os04g0461300|
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| − | Description = Transcription factor, MADS-box domain containing protein|
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| − | Version = NM_001059530.2 GI:297602862 GeneID:4336057|
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| − | Length = 8247 bp|
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| − | Definition = Oryza sativa Japonica Group Os04g0461300, complete gene.|
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| − | Source = Oryza sativa Japonica Group
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| − | | |
| − | ORGANISM Oryza sativa Japonica Group
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| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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| − | clade; Ehrhartoideae; Oryzeae; Oryza.
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| − | |
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| − | Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|
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| − | AP = Chromosome 4:23438738..23446984|
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| − | CDS = 23438926..23439107,23439839..23439941|
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| − | GCID = <gbrowseImage1>
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| − | name=NC_008397:23438738..23446984
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| − | source=RiceChromosome04
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| − | preset=GeneLocation
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| − | </gbrowseImage1>|
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| − | GSID = <gbrowseImage2>
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| − | name=NC_008397:23438738..23446984
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| − | source=RiceChromosome04
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| − | preset=GeneLocation
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| − | </gbrowseImage2>|
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| − | CDNA = <cdnaseq>atggggaggggcaagatagtgatccggcggatcgacaactcgacgagccggcaggtgacgttctcgaagcggcgcaacgggatcttcaagaaggccaaggagctggccatcctgtgcgacgccgaggtcggcctcgtcatcttctccagcaccggccgcctctacgagtatgccagcaccagcatgaagtcagtgattgatcgatatgggcgagctaaggaggagcagcagcacgtcgcaaaccccaactcggagctgaaggtatgccttgatgactgcaactaa</cdnaseq>|
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| − | AA = <aaseq>MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVG LVIFSSTGRLYEYASTSMKSVIDRYGRAKEEQQHVANPNSELKVCLDDCN</aaseq>|
| |
| − | DNA = <dnaseqindica>189..370#1102..1204#tcttctccccccccctccaataattcaaccccctcttctgggaaacctgggagctttctccttcaagagctccctgctagctagatctcctcctctctttctctctctctctctctctctttctgtccatttctatctgtgctctcgcctgagcggcgacaatccagctgagatcgatcgatcgatcgatggggaggggcaagatagtgatccggcggatcgacaactcgacgagccggcaggtgacgttctcgaagcggcgcaacgggatcttcaagaaggccaaggagctggccatcctgtgcgacgccgaggtcggcctcgtcatcttctccagcaccggccgcctctacgagtatgccagcaccaggtcaatggcttctccctccggccctagcttattagcttttctatagattccgttcttgctttggcttatgattattagcatgttttcctcgatcgtcttcaactctccatgcgtaaacactttatttggttggcatctttcttcttattattgttctccgtttctacggtttttttttctctccatgaaagattagaatcttatgaatgagttttacctttgacagcttcagtagtacaaaaggttatcgtgaaaattttatatatattttttttttgcatctttgcacctattattccctgtcatatgtatacatatacatcggccataagtgtttaagaactaatgcatgtgtcaggttcttcaatttcctgttagtctcagattaactactagttgttcatctttgtttttaaccttcttctagctagggtccccctatgtatggccatatgtcagttgtgtgtttactattttgtcatgcatatttttcgaaggaataaatatgtcaactatgctttgcagtgaagcaataattgatctagcactcttggaataaaattgtgtgataactgtacacttatacgtatgatttctgctcacttcatataattgttaatttaccctttttgccgtactcttacactcaaaagctagcacacgcatgcatgtgctttcagattacaaaaataatcttagtaagagttgtgccggccattcgttttgtgcagcatgaagtcagtgattgatcgatatgggcgagctaaggaggagcagcagcacgtcgcaaaccccaactcggagctgaaggtatgccttgatgactgcaactaaacatatttcttcttctgccgatctctgtcatttgtgttgtttaggagttttgtagcgtcttcatatatataacagagaactaacctttctaaactctaacctgagagaaattaactcaacagagattaataaaaaaagcatgcaggagctagcaagttgttctaattaatgcagtacttaactaaaaataagaacagagatcgaaataatcctttgacatcatctattcatttgggttagttccagtgttttggttggacatatgcacatgcactacaccccctgccggaatactatttatctcttttcaagcgtaattgaacaagataaatttgatcatcgcacagatgaaagcctgattaatttggtttccggtggagataaatttgtcagtgctgtttattcagaattcacaaatttctgcgacagtatgtctgaaggatagtttcccgatatctgaccgtctatgatatgcataattaattttcccactaatactgtttgatatttcaaacatgcacaaacttataaatgttcaatattttcatcgtgttgacaacatcctttattttccttcgtctacatcatctcaactgttaccaagaaattattttcgagtaaggacacatcagagtttttcagttaaaatctccgttgttttgagtgaattatgtaataagagataattaggcaagtttatatttgtagttatacgtagagcgggagtgttcacttcaattatcttaaaagaaaacacaatcaaggttctctaattttactgtgcatcagttaggcaagtttatatttgtagttatacgtagcaaaactaaggcacaaagtacaggaaaatggctttaattagctaggcttttaatttaaacaggccaggaaaaaaaaaactacctactgcatgtgtacattgcagtaactttgttatcggagctattgcctatttagctagcacttagcaggatgcattcccattttggtccattagtgacaccttttcaccattattgcatgtaagcacattgcttcatcctctacgttataattcgcgtgatctgcatgcatgtatgcatatacaaaaacaatggtcgtgtttattaggtatactagaggggaacccccatgcgtgttgccgcggaaaaaatgtatgagataagtaaacatgagatgcaaattagatttgctttattttaaatgattggacatcatataagtaaatatcatttatatattatatatcatgctaaaaatattaagataatgtatcttcatatgagatcaaagggtacaaataattgagatggtgtattaaaaatgctagaaataaattagatgtgtgtatacctagagaacatagacaatttacatcgtagatgaatgatccaaaggctacaaataactaggatgatgtggcttcaggagagaagagagaattaacattaactatatatagtgatgatgaaccttataagtaccgaatactctcaccaaagacaatctttagcttggtatcaacaaatgtagatggacatggtaaccaagcatctctatattcatataagaggaatttcaaatagttcttgatagcctatccacgatgagcttttatgttgtagtggtgtctcctctgtccttactcttcaaccaaccttccaataagcgaaatgtttccttagttgatagacctaacaatgcctaccgtgcaagcaaattctaccattggttttgccctattgggatataaggtagctttggatggtatataaggagttatcttaagaagtagtgccaacttaagtatatctagctcatcccttcataggtgcaaaattatgacataggcatgtaatgggtagaggcatgctatatgaaggtagcatagcttgcagaacatattgcattctcatcaccgtgactcaatgatgttgacactagttagtaagccaacccttttttttttccaaaaaaaaaaactatagctagtagctcaactcagacttagtaatttatttgtgagttttctcgggataaacccaaggaataacaaggcttacaacttttattactaactacatttgtgatgaaaaaagtaagcattgtttgttgtaagagaaattctacgttttacgattgacaagcgacatgtcctataaattggcatcgacgaacgtgagttctacgaaatacaaaataccttggtacaagcatttctgtccctttttatcatcgccactaggtttccatccatagacctgcattcttctaaaaggaccattctgctcataaaaagatctccattaagtgtgcaaacatttttttcatacagtttttatcaaattctaggggcaaattggttttctaaagacttaatggaggtttatggatggaaacctaatggcagtgacaaaacgagaaaaaaaacacttgtacgatgatatttttctagagctcgagctttctaatggcaacttttaaaatcggtagtttgtcaataacgaaacatataatttctcttgttttaaatgttagtgatgtggttttttgcatagtaaatgtacattgacaatggtaaggaataaatatgtattggccttctcaactcttagttgattacacttgaatcaagttttttttaacaatagaataaaacctagtctctacagcaacaaagatggtagccaataacttcaaaataaacaacctcatccatttatatgcatccacctacaccccaaaatcttctgagagctcaccttttcacaatggcgaaagcccttgtgccattgaattgggtttgccaaatcaccactttcgctatctttcattttgagagaaaatagaaacatttctagtctttaccaaggttaccaaaatcaggtgtttgctccccctcttttgctgtagtgtgagaaataatcccgcctaaaacaagtgaatctatcttacaactaacaagtcacacacgtcatctttcttaaaaaaagggaaataaagaggacaacaaatcgggtgaggatcctctaccataatatcactataccattacggtcacttatatgtgagttccgctttcttagtgttacacatatcaatgtctataatggtagtgtcattatggtagagggtgtaaaccccaacaaatcattgtcgcgaacgcagctattagcaactagaattaccctatgttgccttcctcaaagactagcattgattaccttaatcgactttcttgtccccgcatggagattatatgcttactgcaactgtgcaataaggatcgaagcagtctagggcagattcgcaaccccagattttgattcgatgatctagattatgtattaaagaacatttgtgtaaacctagatttctcatcatgcattgctaatgcaactgctaagttgtagttatactagcaaccacaccagatcttggtccccagtccccaagccataaaaactaccacacatgtaaaggaatatcttaccttctaaattactacctccatattttaatgtatgacgccattgacgttttgttcaacgtttaatcattcgtcttatttaaaaaatttatgtaattatcatttattttattatgacctgattcgttatcaaatgttctttaagcatgacataaatattttcatatttacataaaagttttgaataaaataaatggtcaaacattggtcgaaaagtcaacggtgtcgtttaaaatacggagggagtactttttatcatttaaaatttgaggatttgtccaaacgtcgaaattggataataatgggtgacaatcaactttgccattttgtctttccaaaaaattttccgttaaagtacggctgaaccatttaagccctctcgctttggttcttttgaatatttttattgtttaagccgctgttttttaaaccttaagtagtagactgttagcttcacatagaccagaaaagctactgtaacctagcttttagcttaacatagagtgacttatgaccttaaaaaatacaaacgaaaaaatatctatttatttaggtttaaacataaacaaaagagggccttaatcaacaaacagccggatgctcatgctcatgtgtcgttgagaggatcccactcgataatcaattggcttaataaactcagctagaggggtaaaatatcgatcagtagatcacacagataataatcccttttatcagaagctgatttcctataagaaaaatgtagagcagccgcatccacgatgcgcaaaacaaccaaaagggcaatattcaatccaccgaacacccttcaggataattcgtatacaaaacttgcaggtacacaactaattatggtccaattcctaagctgcgtaaacggtggaaatgtacatacaaattgtcaatcgaacagtcctcatgccatcgaaatgcttctgaatttagttaaaataaaatgcttctgaagagaaccatcccatcacagctcgcatacagaacaccctgcttgaattcagaggataaaaacatcattataacaagaaaactaacaaagaatcacaaggggcacgtacctgttaaatctgtgttaaatcctcttaaaaggatcagtactgcatctttaagttcacattgaaccttttgcttcggtaacagctgacagatctgtacagatttcagactaactgcttatctttcaccgcaataaagcttgtaccaggatgatataatcatcacttacctgacttgtgcactctgcagatactttgtagttaatctagcttggtgggacttgggagcattttgtttagacaaacaagttttttatctgacttgtgcactctgcagatactttgtagttaatctagcttggtgggacttggaagcattttgcttagacaaacaagttttttacctgacttgtgcactctgcagatactttgtagttaatctagctttggtgggacttggaagcattttgcttagacaaacaagctttttacaatagggggtaacaccccgcaaaacgaggactgataatggagtaccaaattcaatagagttggtagctcatcgtcttatctggaaaaaaaactgtcttcaaactggaaagataatactacttcccttatttgtttacaacaaatttctttgtttgcctcttgttacttcttttaccatacacaataacttcctcagttcaaatagtcttcttgtctaatgtaattgagtttccttttttttaaaaaaaaactagtgagttgataacccagcatgtttctatgggtatacacaacatatttatattgctgcttttggcaaacctggattctgcatttcttgactctgttttcatatccaatagttctggcaaagggaggcagcaagcttgagacaacaactgcacagcttgcaagaaaatcatcggtatggccataaaaccctgcaagtttttcaatgttccatcagaaaattcctcaagatagaaaaacataaaccatcatatatctactactatgaaatacatgcatcatgaacccttgatgatgaactttttttttttgtggggacttgctcatgaatccagcaactgctagcgacaataatacttccagcacctgattgtatagtaaatataaactagtaccagatcataaaaacaagcacctagtgcttgggtatatgatacttagaaaaaagaagaaaaaacagagtatgaaagtgatatatgctgattccaaatttcctatagataatgcattgtttaaccttcacaaacaaaagaaatgaagaaggcacgtgaattttctatatcatttaaaagtaagaaatatataccttcagccattcgatttttatgcatttccggttatctctaaaagaaaaacagaactgagcacccatcaaaggcggacagaccaaatttacaaaggagagtgaatatcacattttcttcacctgtgctttctgcctggtaaattattgttcaaacactccattttgtccttcaggcctaatttacaatacctaaactagaaaggtacaaattatttttattatcaattaacagctgtctgttgatcagctaaaattaagtgtcaatattcactctgtatatcatcagaacaacactataacatccattggttgatggcaggcagttgatggggcaagatctttctggattgggtgtcaaggaactgcaaactctagaaaatcagctagaaatgagcatacgctgcatccggacaaaaaaggtcaacctactaaccatatttttttgttgggcacctgattgattatataatggattaacttaagatcaatattgttgttttcaggaccagctcatgattgatgaaatccacgaactgaatcgaaaggttctacaacatcatgtacaattgctaaatctttgaatcagctagtaagctaactctattgctggcttatttgcagggaagtctcatccaccaagaaaacatggaactgtacagaaaggtcaacctgattcgccaagaaaatgctgagctgtacaagaaggtacttgataaatgcagatagatgatttcacaggatatacgcttcattatatgatgacagctaatctctctcctcagctctatgagacaggggcagaaaatgaagcgaatcgagattcaacaactccatacaactttgcggttatcgaggaagccaacactcctgctcgtcttgaactcaatcccccaagccaacaaaatgatgctgagcaaaccacacctcctaaactagggtaactcagattttctgcacatgatccatctatccattctcagttctttagtgaaacatcaattataacttaatgaaattattgcaggctccaattgcatccatgacaatttatggtgtggaagtgttgcctatattttcactattcttaagggctacagttcagagctcttaaaatgtattggtcataaagaagctaacacataacaagacacagtttgcatgcttggatgattaatatctgatactgtaaaatctattcgaataaaaatgtattatc</dnaseqindica>|
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| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001059530.2 RefSeq:Os04g0461300]|
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| − | }}
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| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
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| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 4]]
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| − | [[Category:Chromosome 4]]
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