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| − | {{JaponicaGene|
| + | The rice '''''Os05g0203800''''' was reported as '''''OsMADS58''''' in 2007 <ref name="ref1" /> by researchers from India. |
| − | GeneName = Os05g0203800|
| |
| − | Description = Similar to MADS box protein|
| |
| − | Version = NM_001061424.1 GI:115462578 GeneID:4338067|
| |
| − | Length = 11215 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os05g0203800, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os05g0203800''''' '''''<=>''''' '''''OsMADS58''''' |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | |
| − | |
| + | ===Function=== |
| − | Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
| + | * The MADS-box family members, identified initially as floral homeotic genes, are one of the most extensively studied transcription factor genes in plants. |
| − | AP = Chromosome 5:6428944..6440158|
| + | * MADS-box genes have a variety of functions. In animals, MADS-box genes are involved in muscle development and cell proliferation and differentiation. Functions in fungi range from pheromone response to arginine metabolism. |
| − | CDS = 6429209..6429212,6429716..6429777,6429962..6430003,6430105..6430146,6430246..6430345<br>,6430440..6430501,6431041..6431122,6439191..6439450,6440008..6440055<br>|
| + | * MADS-box transcription factors, besides being involved in floral organ specification, have also been implicated in several aspects of plant growth and development.<ref name="ref1" /> <ref name="ref2" /> <ref name="ref3" /> |
| − | GCID = <gbrowseImage1>
| + | |
| − | name=NC_008398:6428944..6440158
| + | ===Evolution=== |
| − | source=RiceChromosome05
| + | * The MADS domain binds to DNA sequences of high similarity to the motif CC[A/T]6GG termed the CArG-box. |
| − | preset=GeneLocation
| + | * The MADS-box family has been divided into two main groups. The type I consists of ARG80/SRF-like genes of animals and fungi, also designated as M-type genes in plants, and type II contains MEF2-like genes of animals and yeast as well as MIKC-type genes of plants. |
| − | </gbrowseImage1>| | + | * It is proposed that an ancestral duplication before the divergence of plants and animals gave rise to these groups |
| − | GSID = <gbrowseImage2>
| + | * The length of the MADS-box reported by various researchers varies somewhat, but typical lengths are in the range of 168 to 180 base pairs, i.e. the encoded MADS domain has a length of 56 to 60 amino acids. |
| − | name=NC_008398:6428944..6440158
| + | * MADS-box genes seem to have evolved mainly through gene duplication events followed by neofunctionalization, subfunctionalization or in some cases pseudogenization of the duplicated gene. |
| − | source=RiceChromosome05
| + | * However, redundancy being one of the fates of duplication is also common in MADS-box family.<ref name="ref1" /> <ref name="ref2" /> <ref name="ref3" /> |
| − | preset=GeneLocation
| + | |
| − | </gbrowseImage2>| | + | |
| − | CDNA = <cdnaseq>atgcacatatacaaagagcaggaggctgaaccatccactggcctgatgatgccagagccagcacctgttgcttcccccggctccggtggctcaggtggctcaggctcggtgggagctgagaagattgggagcaggggaaagattgagatcaagcgcatcgagaacacgacgaaccgtcaagtgaccttctgcaagcgccgcagcgggctactcaagaaggcgtatgagctctccgtgctctgcgatgccgaggtcgccctcgtcgtcttctccagccgtggccgcctctacgagtactccaacaacagcgtgaaggaaactattgagaggtacaagaaagccaacagtgacacctccaacgccagtacagttgcagagatcaatgcccagcactaccagcaggaagctgctaagctgaagcaacagatcaccaacctgcagaactccaacaggaccctagtaggtgataatatcaccaccatgaaccacagagaacttaagcagctggaaggcagactggacaaaggcctaggaaagattagagcacggaagaacgaattgctgtgtgctgaaattgagtatatgcagagaagggaaacggagctgcagaatgacaacatgtacttaaagagcaaagttgctgagagtgaaagaggactgcaaacagtgaacatgatgggttcagcatctacgagcgaatga</cdnaseq>|
| + | You can also add sub-section(s) at will. |
| − | AA = <aaseq>MHIYKEQEAEPSTGLMMPEPAPVASPGSGGSGGSGSVGAEKIGS RGKIEIKRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSRGRLYEYSNN SVKETIERYKKANSDTSNASTVAEINAQHYQQEAAKLKQQITNLQNSNRTLVGDNITT MNHRELKQLEGRLDKGLGKIRARKNELLCAEIEYMQRRETELQNDNMYLKSKVAESER GLQTVNMMGSASTSE</aaseq>|
| + | |
| − | DNA = <dnaseqindica>10947..10950#10382..10443#10156..10197#10013..10054#9814..9913#9658..9719#9037..9118#709..968#104..151#actccatctcatctcatccttccccaaccattctcttctccttgaacacacccctctcttcctcattataatctcttctttgattagagaggaattagcaaacatgcacatatacaaagagcaggaggctgaaccatccactggcctgatggtaattgtttttcttggcttggaaactcctaaatttcctcttctctttcagtgtcattttgcaagagggtttggatttcttttttaattgtatgcatatgggagctttgggaaagtagaaaagtagaatcatggctgctagctgatgtgtgagaatagctagatggccatgaagagggagagatatagctagagatctttagtctttaagcaaaacaagaaaaagaagaaaaaaaggtgaaagaaaggcacaagatcaaggagattgatcaccacaggaccaaagatctctccttttttttcccctcaaaaaaagatctctcctttttccttcgatctacaagaattatacaactcacaaaagggggctgtagttacatatattgatttttaagagagatgatggccatgatgtctccagcacttcttgattttcttgccaaagatccatcttccggtcttgcaatttcttgattatgttggctcatgctgtgctgctaagttcttacatagaggactgagtcatatctctggaattattttgtgactcaaatttagatgccagagccagcacctgttgcttcccccggctccggtggctcaggtggctcaggctcggtgggagctgagaagattgggagcaggggaaagattgagatcaagcgcatcgagaacacgacgaaccgtcaagtgaccttctgcaagcgccgcagcgggctactcaagaaggcgtatgagctctccgtgctctgcgatgccgaggtcgccctcgtcgtcttctccagccgtggccgcctctacgagtactccaacaacaggtactgcattcctcttcctctcttcagctctagaaacctaaattaatccatgtgatatatgttatcttgtcctaattggagcaagttagttgctaccttttcttgtgacaaggaggaggcatatatatggtgatgtgcgtccatctcaccttcttttctgttactacatatatgtgcttcagttaattaactgtcttgttgttacttctgtgctttcttgggggtagtagcaactagcaagtgagaaagaaattgcaggagtttctttgtgtgtgtgtgatgatctgtgtgcttgctgatgtggtgtgcacatttctggtttcttttgtgtttcctgtgaggtgagctagatgtgtagatagattcagcacaatgcatactttgtgaagcaagcatgagcatgtacatgcattcttgtgagcttttcttgtgtgtgatgggtgtctgtgactgtgtgtctgtgtgtgttgctttggcttggtggtcctgttcttttattgctccatttatgttctttcctttctctacctctgtctgtgtgatgaggcttgcttagatccttaatacctcactgcatatagcgatcatatattatattttctctattggctatgcatgtgtgcagtaacttgtaactactagtaactagtatgcaagattgtgggcatgtgaggtttgatgttttttttttcagaggtaaaaagtggtgtacacgagtgatgcacacattgatcattcatgattcttttgcatcatcttcttcaattggaggttagttagggttagggtttcatcacatcctccatctctctctctctctctctgcagagtgctgtagatgttactgttttcactagtcatttctctgttcatttacagccatgtgtggtttcctgtattaacaggatgccccatcacgagtgctctgggcccctagctacctatcctctctgacaccggcactgtacttctcatgaggtaccgaacacagtgaagtcagcagtaaataggaaaaacagtgcatgaattacccttttttttctccatctataaggtttggactttcatatgtatttttgttactacctaaggtttacagattagtaatttgtgcaatatttttagtagagaatcttaaggatttgttgtgcttctttttccttgtgcgattacagaagaaatacacgcacacatgacaccacacacgcagaccacactcacacaagtgtgtgcttagttatgcctatagttgttcagccaagaaaggataaagagtaatttatactatataatcaggatgtatgccatgataatacccttatgttctaaatcctaatcccatgtgaaaaaaaattatgaaatgtgtgatcccctgtgagtctgtgactacacatgaatgaactactagtagtagagatgagtaactagtactagtagcaaaaagatctagaaaaaaactctaaactagatcatgtatgatttgtccttcatttttaaaattacgttttaataacccgtcttggttaagaaaaaatatctttacttaaacaattaaacttcatactccaaatgttaataccctgcacaacactatctagcttagactctagtatcatatatatatatatatatatatatatatatatatatatatagtaaatttgttatatatatactcctgtattatcttgttggattacgacggactggtcaatacgtacgatagagatattttttgtgcatttcttaaaagtgatttataggactcccattaatttaacagtgaattttccttgttttgatctattgagtaataaaaaaattggtttaacaattgacgacttgtttggacaagaagcaaattctttgcacagcagcagcagacaaacacactctctcagtacgtgtgcgtgaggctgcaagtgtaaaactgtacactgtactgtgcagaagcaaaaattaaccaatggcacggtcagtagaatacgtacaaatggcagcgtttgcatcgggagactacaaagagaaaaaggctggtttacccggtcagaatggttaaggtccctgtctgcctggctggctggctaggttggaccgtagctgcttctctctcttgcattggctctctctttctctctctataagccattggtcacttgggtactcatatgattcactgtttgcagccagccaatcatgatcatgctggctatgtttagatccaaactttagatttaaatttctaactttttccatcatatcgacctgtcatacacacataacttttcagtcacatcgtaccaattttaatccaaactttcaactttggaaggaactaaacacagccgctgttgtcaataggatgctcgaagatattaaggttttgtaattcgttggtaaacattactacaagacaatgctaataaaatattcatttaggaagaattttagagaagtgttgctacttgttcacacatgctccatgttaatttgttccaatgagcttgcatctttgtatttttctttaaaaaataaattgttaagaaaatcattgttggtcaaatttgcttggaccatgatttcttcacatgttttttcttgtttaaaaatgtatccaataataccgttcctatgtgtgtgagagatagacagaagctgacttgcattgcttttatattggctcttgggaatagttacttggcactattatacgtatgtgacgtgacatttgctctgatcttgcctttgagaattcatgtttggtcttgacgaggaaagggaaatgatatgatagttttcttggttagatttttgtatggcactttattgcttatgggcatgcctgagattgacaaagtgacaaagtgttggagtacgaaatgtggccaaatgatcttgtctgtcaattttcagcaggagtacgtctttctataggaactttgtgatatcctctttggtttgtactctgtagtagtctcgatcagataggggtgtaaatgattaacccgtgacctcactcataagtaaatatataaaataagttacttatatgtcaaaataagctgtttattttattgacttataagtaggtttgtggttagccactaagtacacccttaatctaggacaatatcaaaggaaaattagttacacatattttgtactatttcaattagatgatgaacgtatatatactttgcgtatagtagtagtttttcttgtatcaagagaggaaaggacgttactctgagtcctttcttgaaacgtgtacaagatctatgatcaaggcatatatgcatagtttttatgttgttagtagaaaaaaatggctaagtaattttgcaaaattttttttggctaaaataatgaagacaactagaaaggtagcccgcgcacatgcgcgggcatcttctcgtataatgtgaatgaaattttattatgaatatttatatgcaggtggctttttattaaaatttcttgtattatattctaaactaaaattaaacttattttgtgtgctttgaaagctttttctatttttataattacccttgcaacatataaattctaaaataaaattacttgagatcatgtggttttgaattgatgagaaactattgtgtcgaaacaatggaggtggttcctatgataaaatttagggtattttaaatcgccaaaaggatagcttacaacctcaaaacaaattcaataatatcattttttttgtttgattgtattttaatatatatatatatatatatatatatatatatattcattctaaccgtccttgtaaaatgtttgaatttttctatcaagtattggttttaaatccaacaaaatttgttcaattttcaatttatttcatgcccatttttattttttttcttttggatagttttattctatgaatca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aaaggcctaggaaagattagagcacggaaggtatattaattgtgtgctacatttacatagaattccaagttgaaaagggcatattgttaattaattcatctaatttgataagcattccatatcctgcagaacgaattgctgtgtgctgaaattgagtatatgcagagaagggtaaatactatcagcaaaataccactgttttctttcttgcaaaattatttggtctagttaattgacatcataagataacagcacgagtataatcttttcaggaaacggagctgcagaatgacaacatgtacttaaagagcaaagtaagtattctgttctacattgcaaaaaaaaaagaatgagattcgctttcaaaaagagattaacctagctacatggtaaatctgaattgaagttactgaaataacctacatatatagcaaatcatacctaattgactgaaattctacgtcatcatactaattaattataattattattgtgaaggttgctgagagtgaaagaggactgcaaacagtgaacatgatgggttcagcatctacgagcgagtacgtgcaaaatatgatccattatgatccaagaaacttcctgcaattcaacatcatgcatcagcctcagtattatcctgaacaggaggaccgaaaggcctttatgtcaggtaaaaaatattctcagtgtaacatagtcagagttcatagttcaacaaatgaaatttgaatgttcattaccttctcattgtaagcatctgagtcgtagttagagacatcaagtttttcaaaataaaaaaataaaaaataatgaagagttttcttgggaggattatattgcagggtcagaaatgtgtagggcttatctcacattctaggtattgtttggatttgcttgcaaccataagaattataactcaaatttcccttgcatcaaattatagaaggaattcggaggcataagttatagacaaataatgtggtcgagacaagtttgtgcaagtacgttcagatgcaacgcgtaactaattttgttttactgtttacattccttgcacttgcagatgaaagataaatatggatccgtatcatgcaactatctcaatcatgcatgtgccttcttcaaggagactgatcagttagatattacactgtgtcagtagaacttttatgtgtgaactcttgtatgcatgaataattaactttatcccataattcaggcttggcactatcaaggtgatgtacctaagtattggttcaacctgtgaaattaaaatacttcatacccttcctatgtttatatatgaaatattggtgataatatcttgtgtat</dnaseqindica>|
| + | ==Labs working on this gene== |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061424.1 RefSeq:Os05g0203800]|
| + | * Interdisciplinary Centre for Plant Genomics and Department of Plant Molecular Biology, University of Delhi South Campus, Benito Juarez Road, New Delhi 110 021, India |
| − | }}
| + | * Division of Genetics, Indian Agricultural Research Institute, New Delhi-110 012, India |
| − | [[Category:Genes]] | + | |
| − | [[Category:Japonica mRNA]]
| + | ==References== |
| − | [[Category:Oryza Sativa Japonica Group]] | + | <references> |
| − | [[Category:Japonica Genes]]
| + | * <ref name="ref1"> |
| − | [[Category:Japonica Chromosome 5]] | + | Arora R, Agarwal P, Ray S, Singh AK, Singh VP, Tyagi AK, Kapoor S. MADS-box |
| − | [[Category:Chromosome 5]]
| + | gene family in rice: genome-wide identification, organization and expression |
| | + | profiling during reproductive development and stress. BMC Genomics. 2007 Jul |
| | + | 18;8:242. PubMed PMID: 17640358; PubMed Central PMCID: PMC1947970. |
| | + | |
| | + | </ref> |
| | + | * <ref name="ref2"> |
| | + | Shore P, Sharrocks AD. The MADS-box family of transcription factors. Eur J |
| | + | Biochem. 1995 Apr 1;229(1):1-13. Review. PubMed PMID: 7744019. |
| | + | </ref> |
| | + | |
| | + | * <ref name="ref3"> |
| | + | Winter KU, Becker A, M��nster T, Kim JT, Saedler H, Theissen G. MADS-box genes |
| | + | reveal that gnetophytes are more closely related to conifers than to flowering |
| | + | plants. Proc Natl Acad Sci U S A. 1999 Jun 22;96(13):7342-7. PubMed PMID: |
| | + | 10377416; PubMed Central PMCID: PMC22087. |
| | + | |
| | + | </ref> |
| | + | </references> |
| | + | |
| | + | |
| | + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 5]] |
