|
|
| (One intermediate revision by one other user not shown) |
| Line 1: |
Line 1: |
| − | {{JaponicaGene|
| + | The rice '''''Os12g0501700''''' was reported as '''''OsMADS20''''' in 2007 <ref name="ref1" /> by researchers from India. |
| − | GeneName = Os12g0501700|
| |
| − | Description = Transcription factor, MADS-box domain containing protein|
| |
| − | Version = NM_001073355.1 GI:115488671 GeneID:4352275|
| |
| − | Length = 9213 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os12g0501700, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os12g0501700''''' '''''<=>''''' '''''OsMADS20''''' |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | |
| − | |
| + | ===Function=== |
| − | Chromosome = [[:category:Japonica Chromosome 12|Chromosome 12]]|
| + | * The MADS-box family members, identified initially as floral homeotic genes, are one of the most extensively studied transcription factor genes in plants. |
| − | AP = Chromosome 12:19250801..19260013|
| + | * MADS-box genes have a variety of functions. In animals, MADS-box genes are involved in muscle development and cell proliferation and differentiation. Functions in fungi range from pheromone response to arginine metabolism. |
| − | CDS = 19251097..19251208,19251313..19251425,19251569..19251607,19253841..19253940,19254702..19254766<br>,19254911..19254995,19259826..19260013|
| + | * MADS-box transcription factors, besides being involved in floral organ specification, have also been implicated in several aspects of plant growth and development.<ref name="ref1" /> <ref name="ref2" /> <ref name="ref3" /> |
| − | GCID = <gbrowseImage1>
| + | |
| − | name=NC_008405:19250801..19260013 | + | ===Evolution=== |
| − | source=RiceChromosome12
| + | * The MADS domain binds to DNA sequences of high similarity to the motif CC[A/T]6GG termed the CArG-box. |
| − | preset=GeneLocation
| + | * The MADS-box family has been divided into two main groups. The type I consists of ARG80/SRF-like genes of animals and fungi, also designated as M-type genes in plants, and type II contains MEF2-like genes of animals and yeast as well as MIKC-type genes of plants. |
| − | </gbrowseImage1>| | + | * It is proposed that an ancestral duplication before the divergence of plants and animals gave rise to these groups |
| − | GSID = <gbrowseImage2>
| + | * The length of the MADS-box reported by various researchers varies somewhat, but typical lengths are in the range of 168 to 180 base pairs, i.e. the encoded MADS domain has a length of 56 to 60 amino acids. |
| − | name=NC_008405:19250801..19260013
| + | * MADS-box genes seem to have evolved mainly through gene duplication events followed by neofunctionalization, subfunctionalization or in some cases pseudogenization of the duplicated gene. |
| − | source=RiceChromosome12
| + | * However, redundancy being one of the fates of duplication is also common in MADS-box family.<ref name="ref1" /> <ref name="ref2" /> <ref name="ref3" /> |
| − | preset=GeneLocation
| + | |
| − | </gbrowseImage2>| | + | |
| − | CDNA = <cdnaseq>atggggagggggaaggtgcaggtgcggcggatcgagaacgaggtgagccggcaggtgaccttctccaagcggcggccggggctgctcaagaaggcccacgagatcgccgtcctctgcgacgtcgacgtcgccgccatcgtcttctccgccaagggcaacctcttccactacgcctcctcccacaccactatggagcgaatccttgagaagtatgacagacatgagttattatctgaaggaaataatgtgattgaagagttccctgagctggagggaagcatgagctatgaccacatcaagctgaggggcaggattgaagctctaaaaaagagccaaaggaatcttatggggcaggaacttgactcgctgacactgcaagatatccagcagcttgagaaccagatagacacttctctgaataacataagatcaagaaaggaaaagttgctgatggagaaaaacactattctggagaagaaaattactgaactggagacactgcatacatgcatcagggcgtcacccactaaagctgctgctcctcctgcctgcaatactgctgatgcatttgttcccaacctcaacatctgctgcggcgattccggcgagccggaaaccgtgacggcgccacttggctggaccagcagcaacaatggcttgccatggtggatgctccagtcatcatcgaacggcaagagctag</cdnaseq>|
| + | You can also add sub-section(s) at will. |
| − | AA = <aaseq>MGRGKVQVRRIENEVSRQVTFSKRRPGLLKKAHEIAVLCDVDVA AIVFSAKGNLFHYASSHTTMERILEKYDRHELLSEGNNVIEEFPELEGSMSYDHIKLR GRIEALKKSQRNLMGQELDSLTLQDIQQLENQIDTSLNNIRSRKEKLLMEKNTILEKK ITELETLHTCIRASPTKAAAPPACNTADAFVPNLNICCGDSGEPETVTAPLGWTSSNN GLPWWMLQSSSNGKS</aaseq>|
| + | |
| − | DNA = <dnaseqindica>8806..8917#8589..8701#8407..8445#6074..6173#5248..5312#5019..5103#1..188#atggggagggggaaggtgcaggtgcggcggatcgagaacgaggtgagccggcaggtgaccttctccaagcggcggccggggctgctcaagaaggcccacgagatcgccgtcctctgcgacgtcgacgtcgccgccatcgtcttctccgccaagggcaacctcttccactacgcctcctcccacaccacgtacgtcactatcactactcctgctgcattttccatacaatacgtacaaaataacaaaagcagtagatatatatagttagctcaattaatatgatggattatttcagaaacatttaacttctctctctctctctctctctctcttccctggcatgcatcgtccatgtatcaaattaaaagatgatcaagaatgcaatgtgaaaaatatataacaacccgtgtacacctgtgagtttacaaatacaagcatttcaagcgttcataatttatccatccataaatataagtgttacaggatatactacttattctatcgtctatcacccttctttcaaacttcctccggatgcatgcatatcgatccctcattcaacaagggatattttagtcgctaaacaaattataaatacctatattaattcatcgatagagggggagttagcaagtactccctctgtcccacaatgctggtcgtccaaggaatgtagagaaaataattgctctggatgaaacttaccaggatgccccaaaacattagttgcagtagtcattttaacacaagtacaccagccacataatggtgccatacacctaatttgaatgctttggcacctagaaatttgacaggagcactagatggtgctagggatgaaaacggagcggatacggacggataatgctcataccatattcgttttcatattttttaccggatacgaaaacgaatacggatagctcgaatacggaaacaaatacggattatctcgaatacgaataagaatcgaatatgatcggacacgaatacggaaacaaatttttctcggaacacgaaaaccaactcaacttctaatggaaacaaatatcaacatatataattagctcattttatataaaatgaggtataatttataaatattttttaaaatttaaataatattaatagtatggactagtgttaagagataaactactattaaaatctataaacgtatattgaaggtcatagagttagaaagaaatggggtatgtctcatgggtcctgcggatatccgaatagcactgttcaccggatatccgaattattatccgtatccgacagaaaccttggtaccatatttgtattcgtatccgggagaaaatatccgtattcgtatccgtatccgaactatccgagaattatctgatccgaaaggtatccgtatccatttttgtccggagcggacggaaactatccgctccgttttcatccctagatggtgccacttttctgcgccattattactgccgatgggcgagtacaacgtcaaccattctaggatatttgttagccagtaaaacgatctcctttgtgggagggaggaagtagacattgtacacttcatagggcctgtttggagaactatctcagggatatttttttgctaaagattatcccaccaaaatagccctcttgctgtttggatccaagggctatttagctattattgtaccatcccaatcatttgtctccactaaaagtatacaacagccggatcttctatagctaatccaatacaggcacatacaagcatacacaattccttacaagcacaaactcataatttgtctcaaatgtataagcaagtccgtaaaataattgcacgccaaccgcggcccccacgtccgcggtcgcggccacagttggttgccatggcgcgttgccgacggcgacccattgcccctgatgaggagctgcctcgcccagggctgccgccgacgatgcccgatgacgacccaccatttccaccgtgtccagcacggtcacctgccgcgccgaagttgagccggcgggagcgcggtgcaccacgagacggcccggcgggcgcgtggtgcaccacgagacggcccggcgccctctcgaccagcccttactcccagagagcgtggtgcgcggatgggagggagaccggagcctcggccatggccagctccttcctcgccgccaccctggaggaaggcactgtactcgtggaggtgagggaactcctggcccgacgacgcctgggtgttgaggtccagcgtgtccacgccggtgcggggaacggatccgtgggaagggccggacgccgacggctgcgagggccaaatgttgccggcggcggacgaaatgggatcttgggagaagaaatcgaagccgttggggtccatctccgcgcggattcggtgcacagcgatgcgtcgacgacggatctgatggccggcaacgcgggtggggtgagttgccagtgtggatgcctctcggtggatctgaaggaaggggcagcgcgattcgagggagagggcggcgcgggtgaagggccgggcggcggcgtgggtggggggagggggaggagaagctagggccgggcggcggcgcgggtgtggggagggggaggcgaagctgggccgggcggcggcgagggttctagagagtgagcgggggcgacagcgagcgggggcgaaatgcgatgggttttgccgcaacgggatcggcacaagtgggggaaagtgggaatcggtggggcccacagcaaaatagccccaattagcacccggtgggggtgataattttttggggtgggctatttgcaaatagccctaaaatagccctcctgtttggatccccttgagctattttggggttaaaaggggtgggctaaaaaatatccctaggatccaaacaccgccatagaacgatattatgcatagagattctccttactatcttgtaccaccggtaagtacacggcaataatttgctgagccagctttatttcctcttatgggaactgttatacctgcccaggggtactatttttggtagatgcatgtcggccccattcttctcttgtcctagtatatgcagtattaccttagtcctattgcatatactacattcgtcctattttaagtgcatctatagtttttcgtgcctaacttcgattgttgtcttatttagaaaaaaaaattaaaaatataagtcacacataagatacttatcatgttttatcatcttataacaataaaaatactaattataaaaaaaatttaaataagacggacgattaaaattggacacgaaaactcatgggctacactaaaacgagacggatagagtagtattaatagagtagtattaggaacagccttttgacttgtctacggcaatgcacaaatagtaatcaatataatctaatcatatcttttattgataggaacaattgtttgcacagtactgatatatgtatattttttttcatgttatttcagatcatatacatgaaactcataatcaaccttctattctgttgatttatataattaataatttgaatctgtagacaatccagatcatgctatatggagtataacattattaattgcctctttgtaaataaccattatcagaactatatattcatcttcaaactttgatcactactcgttctttaaaagacaaatacttaaaaatgtattatcaaagtgtgccgcattaatcgtgaaatagttttcgtttatcatagtctaaccatttgcaagatattagatgcatcctcttgttttctctcaatccctccaactcaactcaaattgtactcagtgatgccattccttttacacaattaattgcatgatgttacacttacacaccattgtttacgccctaacgaaactaatgtgtagtgcacgtaaaacgaagcgattcattagcgcataattaattaagtatttagttttttttaaaagggattaatatgattttttttaaaacaactttggtgtagaaattttttttaaaaatgtactgtttaatagtttaggaagcgtgcgcgcggaaaacaagaagaaggaagttaggaaccgaagtaacaaacacaaccttagggcactcccaaccctccacctagtatgatgtctatggcattaactacattgccatgtaggacttttagcttatgtggcactatattaattaagagagagggagtgaagagaggaagaaactgggtctcatgcaagacacagcttcaacacgagaacctatgcactagacactatcaagttttgcattgggagagaatagtgtcttcataatagatgaaaaataaatatgattggtagagaagagatatgatgtatttattaatggtctattattttaagaaaccatggattatatagtgtagtgtgatttcttattgacatggcaccatagacactgcttatggacaatatggattgggactgtctttaatccaatcaaaccaaggccaccccgtgaatgttcactgcatacgcatagcactattcacatgagacagacccatggctgggcctaccaaccgtcacatattgatctggaaggacatgcactattcagcgcgtgtgagatgcccaatcaaagaaataactgaaattgatgtagataatttgtttacttaaacaccgtgggaacgctggaaagttaggggtgccacgtcagatgttacttttgtaaaaaagcccccgcagttctgttaattatgcattggtccccgctgataatttatagtataaattagctaggtttggctatcgttgagcattggccgaaattctattctattaactaaacaaattagctaggtgacttgaagtgaagtgagtgtactcaccatccaattatagttaattagggtctgtttattttgttgccactttcgattcattaatattcatgtgtgagggcgggaatattgtgaacattttaagttagttttttttattagaggaagtatatcctaataattgattctcatattttattgatagtatggagcgaatccttgagaagtatgacagacatgagttattatctgaaggaaataatgtgattgaagagttccctgagctggaggtgtgtacgtaggaaggggaaatgttcatcataacatttgtacattcatcctgtataaatatgcactacattatatatcactatatctgttcaatgtataggtagtaaacaatttttagtttacatcttctgtgttctgcgcagggaagcatgagctatgaccacatcaagctgaggggcaggattgaagctctaaaaaagagccaaaggtaacaaaaaatctagacaaaactaatagctcttcaatttttcccttttctgtatttaacaaatcaactggcctttccaatgtagtatgccgtgttagtttcaatatacagaaaataggaacagtatctgtggatacccaaaatatgctacatatttctgtaaacttttattggtttattaataagtattaattaatcaagaagagggatatttaaaaaaaattaaaccctgcaacatactcttctgggaaatgatcaatcttttttacctggtgggaaaggatgatcatattatttttagctcgattatttgtcgacacatatactttattgaacattgttgatcagctcagcatgctgaatatatatggccttgaatcaatgcattagtctgaaaaaaaataggtgcaaagcatctttctttaataaaaatgtaagtgcaaagtatcttcatcttcttgaatcttggtactagctagacagtggattctttattgatggctcaagtttgtcactgtcaatacaaccggtaaaatattacaatcaataaaaccttttttttaaattaaaaatgtcatatatgtccatctagtttgatcttatatatggatttggctcaaaagctgtctgggaatcagtggacaaatgctaaaacgcagacacctattcttgtcaaatgtatatctcctttgtacttgtgatgccctagttgttggcaggatagggacctcatgctctcatacttgtcatccatggctcaggaatcttatggggcaggaacttgactcgctgacactgcaagatatccagcagcttgagaaccagatagacacttctctgaataacataagatcaagaaaggtacaaacacacacacactgaacttatagaactacaaaaatatgtttacttgagatgatcatattgtgtggtgttgctaatggtttttaatttgtaactaggaaggtaacccgcgcgaggcatgtgttgtacactaagtttgagatatttataagagcaaaatattgaacggagaacatctagcacaatttctccataaattgttttcatcggcattaattgcttttataattttataacctattagttttatattgtatcatatttaaataatatctattagaaattatttataatcttctttatcatttgaaattaagagacttattttttttaagaaaacatgttaacgaaagtaaaaatatggtgtttttgaaattacatatctatggaccatagttcattaaaggattaattaggtggaagatgaagctccactaaacttttgggtttatatagtctaatatggttgatgtagtttgagaggcaatccatatatgaacatttcatgtagggtgggtgagaggctccatgcagcctaacatgaatacgataacgacgaaatataattgcgcagtaatattttaaaaatattatgtaccatgaataaattcttttttttaggtaagatagatttaacgattataactaatagtttaccggtttaaaaggcacatgagtattgcagaatgtagcttaaaaattatggttgttttaatattcaatgttattgcgaagtgagcgcacctcaactggttaggtttcttgtggtggaacttgcccactcggattcaagtcctagatttgatatgggtgttggcatttacgactaattattctttcagtggtaggtgacgtatccatcgacagcgagacgacatggtaacttcttcaatcttaaaatatgtcggctcagtctttcggaggtactaaaggggtagggtgcgtagacgctgtgtttctaagagatttccaatattattaattgtttccgctaaaatctatttatttttttcttaaaaatgtatggattagtttttgtcaacaattagtgaacaatagctagtccgtagaatatatatctgatccaaagtaatgaatttttttaataatatagttaacttggttctttagttttaaattttatagtaaataatctaatttatctcctacttatgctacattcgatctcattggttgagcttatgtagggcacacaaaacgatataggccattaacgcatgattaattaagtattaaatattacaaacgtgaaaatagtttttttttttaaaaaaatgtatagaatgtatttgcacaacatgcgcagattagtagtttaaatgaggcataatttttagacaatacattatttatttctgtttttgacaatatgtcctgagtaatttattactcattatttcatcttgaacaatcaagatacgtttttttgatattttatattatattatagatctacttttggctgtgcaagtttgtaaagtaatatatttttcttatactaccaccttcactaaatatatgacgttggtcatcaatatataaaaaacaataaaaaaaatacaaaggaagtacaaagagcgttcttttctttcggtagtttcactaaatatggccgtcataagaaaatacagagaagtgcaaatccacctttaaaaaaagcgatgttttttttaatttccagtagtacgtacgtatacagttttttttttctgtatattatttcttcttttctaggccgtggttgttaatccgtatgtacgtatgccttctcagctttttctagtcaatttttttatggaaagtattgctcggtaaattaggaggggtagattactatttataacagatctaatccaatggtgtaaactaatgggtccaccaacttaaatgaaaatcgagggctagattttttttcttttttattagaatttctaagttttttctattttattattgcgccatgtggcagcttgagagcgtttttagagcaccatgtggcagtatgagagcgtttgtaggaagtttaatggacttttagtatataataatagaagatagatagatagatagatgttttagaacaatctcttgctcaagtcgatcgccgagctccgacagaaggcaaatgctaaaaaccttttgattcttaaacttgtaggtgaaatggttataaatcttcttaatgttagtcttttttgtctctctccaggaaaagttgctgatggagaaaaacactattctggagaaggtattctgttaattttactgatggaatgagaaagcatatcctaattattttcagttaccactgcatgattcatgtagctgtactcagctcaactgaactgaatcactaattttgtgttaatttgtccatgaaaaaaaaaaaagaaaattactgaactggagacactgcatacatgcatcagggcgtcacccactaaagctgctgctcctcctgcctgcaatactgctgatgcatttgttcccaacctcaacatctggtgagccacaccatccaactgccaccatgcaatgcttgccatgttgtttcttcagattcacctcaactgaaactctgatacctggccttcaaatcaaaccgcagctgcggcgattccggcgagccggaaaccgtgacggcgccacttggctggaccagcagcaacaatggcttgccatggtggatgctccagtcatcatcgaacggcaagagctagaagatgttcagatgaaatggtccctgcagccattgcatggttgctgaataatgtcgtcccagatggttaggcaagcaacctagctagaactttcagttagtgagcggtagtagtatctcccccttcttaatccctactatactccgtagattaattctaagcatccttttgtttccattatctacgctgctggtttgatgaaattcctgtgttgtattcagctgcattgggatcattgctcagcctttggtcatgtctctcactggaatcaatgtgtcatgtctgtcttgcaatca</dnaseqindica>|
| + | ==Labs working on this gene== |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001073355.1 RefSeq:Os12g0501700]|
| + | * Interdisciplinary Centre for Plant Genomics and Department of Plant Molecular Biology, University of Delhi South Campus, Benito Juarez Road, New Delhi 110 021, India |
| − | }}
| + | * Division of Genetics, Indian Agricultural Research Institute, New Delhi-110 012, India |
| − | [[Category:Genes]] | + | |
| − | [[Category:Japonica mRNA]]
| + | ==References== |
| − | [[Category:Oryza Sativa Japonica Group]] | + | <references> |
| − | [[Category:Japonica Genes]]
| + | * <ref name="ref1"> |
| − | [[Category:Japonica Chromosome 12]] | + | Arora R, Agarwal P, Ray S, Singh AK, Singh VP, Tyagi AK, Kapoor S. MADS-box |
| − | [[Category:Chromosome 12]]
| + | gene family in rice: genome-wide identification, organization and expression |
| | + | profiling during reproductive development and stress. BMC Genomics. 2007 Jul |
| | + | 18;8:242. PubMed PMID: 17640358; PubMed Central PMCID: PMC1947970. |
| | + | |
| | + | </ref> |
| | + | * <ref name="ref2"> |
| | + | Shore P, Sharrocks AD. The MADS-box family of transcription factors. Eur J |
| | + | Biochem. 1995 Apr 1;229(1):1-13. Review. PubMed PMID: 7744019. |
| | + | </ref> |
| | + | |
| | + | * <ref name="ref3"> |
| | + | Winter KU, Becker A, M��nster T, Kim JT, Saedler H, Theissen G. MADS-box genes |
| | + | reveal that gnetophytes are more closely related to conifers than to flowering |
| | + | plants. Proc Natl Acad Sci U S A. 1999 Jun 22;96(13):7342-7. PubMed PMID: |
| | + | 10377416; PubMed Central PMCID: PMC22087. |
| | + | |
| | + | </ref> |
| | + | </references> |
| | + | |
| | + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 12]] |
