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| − | {{JaponicaGene|
| + | The rice '''''Os02g0161200''''' was reported as '''''OsC3H13''''' in 2012 <ref name="ref1" /> by researchers from China. |
| − | GeneName = Os02g0161200|
| + | ==Annotated Information== |
| − | Description = Zinc finger, CCCH-type domain containing protein|
| + | ===Gene Symbol=== |
| − | Version = NM_001052511.1 GI:115444392 GeneID:4328385|
| + | *'''''Os02g0161200''''' '''''<=>''''' '''''OsC3H13''''' |
| − | Length = 6622 bp|
| + | ===Function=== |
| − | Definition = Oryza sativa Japonica Group Os02g0161200, complete gene.|
| + | * Genes in the CCCH family encode zinc finger proteins containing the motif with three cysteines and one histidine residues. <ref name="ref1" /> <ref name="ref2" /> |
| − | Source = Oryza sativa Japonica Group
| + | * CCCH-type zinc finger proteins have essential functions in various developmental processes in plants. |
| | + | * CCCH family genes have been known to play important roles in RNA processing as RNA-binding proteins. |
| | + | * CCCH-type zinc finger proteins are RNA-binding proteins by virtue of the ability of their defining motif to directly bind to RNA, whereas most of the other zinc finger families are confirmed as DNA-binding or protein-binding proteins. |
| | + | ===Expression=== |
| | + | * The expression profile indicated that most members of this subfamily are regulated by abiotic or biotic stresses, suggesting that they could have an effective role in stress tolerance. |
| | + | ===Evolution=== |
| | + | * A typical CCCH protein usually contains 1–6 CCCH-type zinc finger motifs. |
| | + | * Based on the different numbers of amino acid spacers between cysteines and histidines in the CCCH motif, a consensus sequence for these was defined as C-X 4–15 -C-X 4–6 -C-X 3 -H (X represents any amino acid) based on the whole-genome analysis of rice and Arabidopsis CCCH proteins <ref name="ref1" /> <ref name="ref2" /> |
| | + | You can also add sub-section(s) at will. |
| | + | ==Labs working on this gene== |
| | + | * State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Taian, Shandong 271018, P.R. China |
| | + | ==References== |
| | + | <references> |
| | + | * <ref name="ref1"> |
| | + | Wang D, Guo Y, Wu C, Yang G, Li Y, Zheng C. Genome-wide analysis of CCCH zinc |
| | + | finger family in Arabidopsis and rice. BMC Genomics. 2008 Jan 27;9:44. doi: |
| | + | 10.1186/1471-2164-9-44. PubMed PMID: 18221561; PubMed Central PMCID: PMC2267713. |
| | + | </ref> |
| | + | * <ref name="ref2"> |
| | + | Peng X, Zhao Y, Cao J, Zhang W, Jiang H, Li X, Ma Q, Zhu S, Cheng B. CCCH-type |
| | + | zinc finger family in maize: genome-wide identification, classification and |
| | + | expression profiling under abscisic acid and drought treatments. PLoS One. |
| | + | 2012;7(7):e40120. doi: 10.1371/journal.pone.0040120. PubMed PMID: 22792223; |
| | + | PubMed Central PMCID: PMC3391233. |
| | + | </ref> |
| | + | </references> |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Structured Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]] |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
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| − | |
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| − | Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
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| − | AP = Chromosome 2:3297230..3303851|
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| − | CDS = 3297334..3297490,3298900..3299037,3299174..3299207,3299814..3299949,3300034..3300090<br>,3301689..3301786,3301876..3301947,3302056..3302228,3302552..3302730<br>,3303136..3303336,3303524..3303559|
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| − | GCID = <gbrowseImage1>
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| − | name=NC_008395:3297230..3303851
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| − | source=RiceChromosome02
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| − | preset=GeneLocation
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| − | </gbrowseImage1>|
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| − | GSID = <gbrowseImage2>
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| − | name=NC_008395:3297230..3303851
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| − | source=RiceChromosome02
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| − | preset=GeneLocation
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| − | </gbrowseImage2>|
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| − | CDNA = <cdnaseq>atgctgggccctcctcgccgcgggccggcgtacaagacgaagctgtgcgcgctgtggcagcgcggcaactgcaaccgcgacacctgcagcttcgcccacggccacggcgacatccgccgcccgccgtcctcccgcggcgccttcacgcaccacccggggagaagagattatagagccggtgatttcagaggcaggattgataggaggttttcacctcggaggaggcattcccctggaagagagtccaggggtcatcgtcccctttatgatagaaggccatcttctcgagaaagagattctagctattcacgatctcctagcaggaagagtgagaggaggcatgaaaagaagactgacgatggagaaaccaactcatctaggagtttaagtctctctgataacaacgatgaaaagaaaaaggacaaattctcaagtggtgatgagaaagaagaccacgaaaagcagctgaaacaaatacggctggatatggaggctttgcgtgacgataaaactcagatggaggtcattttggatgagaagatagatgaagtgcgcaagatctctagcaaagttaatgatcttgaggtgcagcttagaagggagaaagatgaatgccataggatgacctcaaagatgaagaagtttattaaagctcatgctcggtttttgaaggcacaagaagaagtgaaaaggtcacaagctcgtttcgagaggcttggtgatttgcttgcttcagatattttgaagcgtggtgctaatgaagaggggtccagtgtcaatgaagacctaaacgaaaggagtcctaatactgcagcaactaaaaagagatcaatcccatactcaacaagtgaagaagcgaaagctgtgaagaagagaagagagcgagactctgatacaatgactaggtcagataaatataggtcagatgttacagattttgataaaacaagtaaggggactgaggcaaccaagtctttatatttgaagaagaaattatgggaagatgaaaaaagtaagctaggagccaacattttcacagaaaaggtcaaaggttctcccgtcagacatgttttgccctccactggcatggctgctcatgctattgatgatctcaacgaagctattgaactggaggacagacatgaatccatagacgcattactagaaaatgatgctgatgacaaaactagatcacctgctattcccctgcagccaccaccagtggtacagaatgcttatgagcagtatgagggtgatgacgaggaagtcgatgtggaataa</cdnaseq>|
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| − | AA = <aaseq>MLGPPRRGPAYKTKLCALWQRGNCNRDTCSFAHGHGDIRRPPSS RGAFTHHPGRRDYRAGDFRGRIDRRFSPRRRHSPGRESRGHRPLYDRRPSSRERDSSY SRSPSRKSERRHEKKTDDGETNSSRSLSLSDNNDEKKKDKFSSGDEKEDHEKQLKQIR LDMEALRDDKTQMEVILDEKIDEVRKISSKVNDLEVQLRREKDECHRMTSKMKKFIKA HARFLKAQEEVKRSQARFERLGDLLASDILKRGANEEGSSVNEDLNERSPNTAATKKR SIPYSTSEEAKAVKKRRERDSDTMTRSDKYRSDVTDFDKTSKGTEATKSLYLKKKLWE DEKSKLGANIFTEKVKGSPVRHVLPSTGMAAHAIDDLNEAIELEDRHESIDALLENDA DDKTRSPAIPLQPPPVVQNAYEQYEGDDEEVDVE</aaseq>|
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| − | DNA = <dnaseqindica>105..261#1671..1808#1945..1978#2585..2720#2805..2861#4460..4557#4647..4718#4827..4999#5323..5501#5907..6107#6295..6330#ctccaaaccctcgcgggagatcggaattccccaccccggagcgccggatccaccaccgatcgtcggcggcggcggcggaggaggctgcgacggcggaggcggagatgctgggccctcctcgccgcgggccggcgtacaagacgaagctgtgcgcgctgtggcagcgcggcaactgcaaccgcgacacctgcagcttcgcccacggccacggcgacatccgccgcccgccgtcctcccgcggcgccttcacgcaccacccgggtatggattgcccccctcccccctcgcgcgcccccctgttcgttgtttgtcttcgagatcccccgcccctgggtttagggtttctggtgtctagtgcaggaggcggagggcgttggatgtcctagaattttttattttatcgtcgtgattgtcgataagcttagattagatgtatgcgttgctagatggctagatgtgaaatggaagtgcggaaaccggactattggattatgtcaagagtagtattttcacaaaagccgagtgataatgttataagagtgagcattggaagtttggaactaagcggctggttctggagaacgtgacatactgggcggtaagcccgaatgcgatgtttggcttcccatgcaaaaaaggaatgtcataaaaagtggaaattgctggaatgttgccttttaagaggacattcgatacccatgaaggagttaggacttaggagagaatccagtcattgctgtaaaccttctttatgattcgcgcgatagtttgctggcttttttgtcttgttctattgcgtttgtgatttttactgtatttcttatacgagtgcttgaattcaaccaccagttgctgcagatagaaaataattctaacaagtggaagcttgttgcagaattaggtggcattcttactggttgtcttttgatttaattatcattcaaactagcagactctgcagatatgttgactcaactgctgccagaggatagcatgacctttttcataaattcttcacttggtatttcgacgatttgtgttgacgataatgcttgtgctgtaccagaaggtgaacttgtgaggatcttggatgatgcctccattgaatgattgccaataatatattcaatgtgatacaatcatgccattagctggctttgcaattactgggtcacacattatatgattatggtgcatcagctagttccattggaagtattattctcactggtgattcaaacattttgtgattcttcacaagtcgccattgaagatatctgagcaaatgctagtatatgtatgggatattgggactatgccattatggaagacctttcttcatcatacttgctatatgaggttatttatggagcactcatccatttcacttcagacgatcaacattattatattaatgggtgaatcagtggtttcttgtcgtatcttggtatatgcttgtgcattattttttggccctactttttttgtggctaatggcattatcctggagccccagctacttattgctaattgaataatcttgtagctcaatggtcttggtaagcttaacaggattatgggtgtcctactatctatatattacttcctttttgttttttgtttcataagttgcttcctttgtataaaacttgcacctccctgacttctagggagaagagattatagagccggtgatttcagaggcaggattgataggaggttttcacctcggaggaggcattcccctggaagagagtccaggggtcatcgtcccctttatgatagaaggccatcttctcgagaaagaggtaataactgctttctttctctgtcgtgtgtgtatttgcatgtgtgtatacaactgtttctggtcgcttctacatactgattgcttttaagtttatgctatttataaactcataaaaatgtgatttcttactgcagattctagctattcacgatctcctagcaggaagaggtacatatttcatttcatcatatgagcatgatcttttgaagttaaattctaaatatgctgtgagtgcatgttaaagccctgatcaaagttcaatttatggtgtctttgcttatctttatcatcgatttattagtatattgccttgtcgtgtttctattggtcttgcattttagtttttcatcattgttaatcaccatttgatatgcttgagttaagatccacacaagctacaattttagttctgtagttttatattaatggtgctgtaaactatcatcaacatatttgttccattataatgctaaaattatcttgctcagaatggtaaggttttgtattcttcctgcagattgtacctggtgatacttactatctatcactcaaattatttgttttgttttcatagtcataagcatgttttcctaaaggtcatgcaagcacttgtataagctgtattttgcgatcaaagtagaacttgatatttgaacactggcatttccgttggaattgtggttgggtttactagatttattctagatgccttgaacatgttgagtcgtgctgaactggtaatttacttttccacaatctatcctttatttccagtgagaggaggcatgaaaagaagactgacgatggagaaaccaactcatctaggagtttaagtctctctgataacaacgatgaaaagaaaaaggacaaattctcaagtggtgatgagaaagaagaccacgaaaagcaggtatgagaaaaatgtaatcaaattcatggcttatacaagcacatttggcacaatcttcattgcataattatgaatattgtgcagctgaaacaaatacggctggatatggaggctttgcgtgacgataaaactcagatggaggtcagtttctatttgtctcgctatatttgttacaatatggcacatgctaccatgttaacattttgactgccactttttattcactcataaaaaggagttggtggttgtgatgataggttccaccatcccatgccattttaaaagatcttttgtggatgaatctaccttagtgtgtgtgtgtgaattgtaggatcttttgtaaaggattacatcttctgcacatgtagacatgcataagatgatcgattgacgcaagtcatatattctattttaaatttgttactaatttgtcatatgtagacatgtatttttataaaaaagttcaaaactaatggcttatttatctgtggtatgctgcaatgaatgagcttatgagcactatgctagtaatgtgtaaattgagaaatggtaatgcatggatttcatcaagtgttcaaagcgtaggtgacttttcactagtccagtactgctgtgccaactatcaactaatagtgtttgcatgtagaacttagtatgtgggtattgtttatcatctttaatttcagacatattctccattctgttcatgtttggcacagagattgcacatcttccaatcatttaatagtagtcatgcttgacgaattggttggcagtgcgtctttccatgaataaccccaagagtaccctctagtcttgtgtccactttggaccttcattgacttattgtacttgagtttatttatttttgtcttcctgtcatgttatattttccgactgagctttggagcgggtcagcactcagcaggcacattattatatggtgcttgcgctcttgtttcaaatgctttctattttatggctgtgctaatatttcaaattttcaatggtgctgcaagaatttgatttcacattgtttttagcatctcgtgaacacagtacttgctaactactactttagaaaagactcctgcttttttttttgtttcatggaatgatattacaaaacatcctacttggccatgtctctcttttagacttttagaaaaagtcaagctcttagaaatgttacataaataaatgtacactaatttataaatggttccttataatttgaaaaaagtttgcattaaagacaccatttaataatattcctacttcatcactgttatgagcatgggccaggccgatgcagcagtttaggcacgataaattaggaataagtcatataatggtaggagattatctagttaggaaagagatgaagtttattatctagttgggattgatttctatgatactatagactatccttggatgtcaagcctgtcctccctatatataaagggaccccatgtactctatcattaatcaatcaatgaatctctaaagttagccctaatcctcagagcctcttttagctgagcagggagaagccttgccgctgctattagtgagcgagtgccctatcactgggtcttcggacccttaccctagctactccataacagtcactacccattgcttgtacttagttccattcacgtctataatgttagatcatgctgaatctttgctccaaactcttaactctagtcaacgcacttacctatttgtaggtcattttggatgagaagatagatgaagtgcgcaagatctctagcaaagttaatgatcttgaggtgcagcttagaagggagaaagatgaatgccataggtacttaagcaatgtttccacatgacaatggcacattatcttgacagtattatccaatagttctatattgtttttctatacctttgtaggatgacctcaaagatgaagaagtttattaaagctcatgctcggtttttgaaggcacaagaagaagtgaaaaggtgctttatgttttcatcatgtttggccttgtaatgctagtacacaccagattactcctttttgcataactatcaatcaataagtgttcaccaattggagttatgcaggtcacaagctcgtttcgagaggcttggtgatttgcttgcttcagatattttgaagcgtggtgctaatgaagaggggtccagtgtcaatgaagacctaaacgaaaggagtcctaatactgcagcaactaaaaagagatcaatcccatactcaacaagtgaagaagcgaaagctggtatgtagcttagtttctcgggacactctgattgccaggttgtgatttgtacaatatggatcttggtgttatgcagcatccaactttccccttctgttaaactgatatatgtacctctttatggagtaaccagtcgatcctagtatgaagtagttcaaatgttcctttatttaatattaagcattaaaattgatgtgcttagttttcttacagtagcactgaaggatgcctagtttcttttataattggattttaattctttctgcaaattgctgaagaagtgtcttaattatgtacttaaacctaattgcttgtctcctcagtgaagaagagaagagagcgagactctgatacaatgactaggtcagataaatataggtcagatgttacagattttgataaaacaagtaaggggactgaggcaaccaagtctttatatttgaagaagaaattatgggaagatgaaaaaagtaagctaggagccaacattttcacagaaaaggtgcaccatttctcccgcccgctctcaattttatgatgaactacatatcatacttagtacactcagtccagtgctttgtttaaacattatcacatattgctagcctatgcatttgattgcactgtatatatctctactagtgtaaaagcagagttgtccttccttcccctcttcccacctaccgcgtacagcgagagagtgaaaaaccgaaaggccaaacttattacttgtctaaacaaaaagcctagttgatatttggaaagttcggtcattgccagaccttgtattgaaactgataggcttccttgatcatcaggtcctaaagcccttcttggctatgttggcatctgtatttatctttgtttgattgtgcttatcacaggcaaatattttgttaacttgcaggtcaaaggttctcccgtcagacatgttttgccctccactggcatggctgctcatgctattgatgatctcaacgaagctattgaactggaggacagacatgaatccatagacgcattactagaaaatgatgctgatgacaaaactagatcacctgctattcccctgcagccaccaccagtggtacagaatgcttatgagcaggtgattaaattttcacctttccaaaaaaaaatattggacctgcttacatgcacggtcagcggcatggaactggacagtgcattttgtttataaaaaatcgttgtactaaaaaagctccttttttttccctgtgcatttgctaatttgctgaaaaagcaaactcataatttgtttcatcttttcccagtatgagggtgatgacgaggaagtcgatgtggaataagtggatggcctcgtttctagacaagaggcctctgatgaagcaatggcgagattagcatcttccccagctccttataattagtactattagcatcttggtgtacaaagtgctatctatttgacattgggaattcagcttatatttatcaagaatccttttgtagtaacatccttggcgctgagacagccttagtcaactatgtggagcagccgtataaatactccatagagtgtctggtttggctaagctaatgacgtatggtatgtgcgctccttctgccctggggattgcg</dnaseqindica>|
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| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001052511.1 RefSeq:Os02g0161200]|
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| − | }}
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| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
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| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 2]]
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| − | [[Category:Chromosome 2]]
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