Difference between revisions of "Os06g0170500"
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| − | + | The rice '''''Os06g0170500''''' was reported as '''''OsC3H40''''' in 2012 <ref name="ref1" /> by researchers from China. | |
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==Annotated Information== | ==Annotated Information== | ||
| + | ===Gene Symbol=== | ||
| + | *'''''Os06g0170500''''' '''''<=>''''' '''''OsC3H40''''' | ||
===Function=== | ===Function=== | ||
| − | + | * Genes in the CCCH family encode zinc finger proteins containing the motif with three cysteines and one histidine residues. <ref name="ref1" /> <ref name="ref2" /> | |
| − | + | * CCCH-type zinc finger proteins have essential functions in various developmental processes in plants. | |
| + | * CCCH family genes have been known to play important roles in RNA processing as RNA-binding proteins. | ||
| + | * CCCH-type zinc finger proteins are RNA-binding proteins by virtue of the ability of their defining motif to directly bind to RNA, whereas most of the other zinc finger families are confirmed as DNA-binding or protein-binding proteins. | ||
===Expression=== | ===Expression=== | ||
| − | + | * The expression profile indicated that most members of this subfamily are regulated by abiotic or biotic stresses, suggesting that they could have an effective role in stress tolerance. | |
| − | |||
===Evolution=== | ===Evolution=== | ||
| − | + | * A typical CCCH protein usually contains 1–6 CCCH-type zinc finger motifs. | |
| − | + | * Based on the different numbers of amino acid spacers between cysteines and histidines in the CCCH motif, a consensus sequence for these was defined as C-X 4–15 -C-X 4–6 -C-X 3 -H (X represents any amino acid) based on the whole-genome analysis of rice and Arabidopsis CCCH proteins <ref name="ref1" /> <ref name="ref2" /> | |
You can also add sub-section(s) at will. | You can also add sub-section(s) at will. | ||
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==Labs working on this gene== | ==Labs working on this gene== | ||
| − | + | * State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Taian, Shandong 271018, P.R. China | |
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==References== | ==References== | ||
| − | + | <references> | |
| − | + | * <ref name="ref1"> | |
| + | Wang D, Guo Y, Wu C, Yang G, Li Y, Zheng C. Genome-wide analysis of CCCH zinc | ||
| + | finger family in Arabidopsis and rice. BMC Genomics. 2008 Jan 27;9:44. doi: | ||
| + | 10.1186/1471-2164-9-44. PubMed PMID: 18221561; PubMed Central PMCID: PMC2267713. | ||
| + | </ref> | ||
| + | * <ref name="ref2"> | ||
| + | Peng X, Zhao Y, Cao J, Zhang W, Jiang H, Li X, Ma Q, Zhu S, Cheng B. CCCH-type | ||
| + | zinc finger family in maize: genome-wide identification, classification and | ||
| + | expression profiling under abscisic acid and drought treatments. PLoS One. | ||
| + | 2012;7(7):e40120. doi: 10.1371/journal.pone.0040120. PubMed PMID: 22792223; | ||
| + | PubMed Central PMCID: PMC3391233. | ||
| + | </ref> | ||
| + | </references> | ||
==Structured Information== | ==Structured Information== | ||
| − | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 6]] | |
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Latest revision as of 03:57, 28 March 2017
The rice Os06g0170500 was reported as OsC3H40 in 2012 [1] by researchers from China.
Contents
Annotated Information
Gene Symbol
- Os06g0170500 <=> OsC3H40
Function
- Genes in the CCCH family encode zinc finger proteins containing the motif with three cysteines and one histidine residues. [1] [2]
- CCCH-type zinc finger proteins have essential functions in various developmental processes in plants.
- CCCH family genes have been known to play important roles in RNA processing as RNA-binding proteins.
- CCCH-type zinc finger proteins are RNA-binding proteins by virtue of the ability of their defining motif to directly bind to RNA, whereas most of the other zinc finger families are confirmed as DNA-binding or protein-binding proteins.
Expression
- The expression profile indicated that most members of this subfamily are regulated by abiotic or biotic stresses, suggesting that they could have an effective role in stress tolerance.
Evolution
- A typical CCCH protein usually contains 1–6 CCCH-type zinc finger motifs.
- Based on the different numbers of amino acid spacers between cysteines and histidines in the CCCH motif, a consensus sequence for these was defined as C-X 4–15 -C-X 4–6 -C-X 3 -H (X represents any amino acid) based on the whole-genome analysis of rice and Arabidopsis CCCH proteins [1] [2]
You can also add sub-section(s) at will.
Labs working on this gene
- State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Taian, Shandong 271018, P.R. China
References
- ↑ 1.0 1.1 1.2 Wang D, Guo Y, Wu C, Yang G, Li Y, Zheng C. Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice. BMC Genomics. 2008 Jan 27;9:44. doi: 10.1186/1471-2164-9-44. PubMed PMID: 18221561; PubMed Central PMCID: PMC2267713.
- ↑ 2.0 2.1 Peng X, Zhao Y, Cao J, Zhang W, Jiang H, Li X, Ma Q, Zhu S, Cheng B. CCCH-type zinc finger family in maize: genome-wide identification, classification and expression profiling under abscisic acid and drought treatments. PLoS One. 2012;7(7):e40120. doi: 10.1371/journal.pone.0040120. PubMed PMID: 22792223; PubMed Central PMCID: PMC3391233.
